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Structure paper

タイトルNovel starting points for fragment-based drug design against human heat-shock protein 90 identified using crystallographic fragment screening.
ジャーナル・号・ページIucrj, Vol. 12, Page 177-187, Year 2025
掲載日2024年7月10日 (構造データの登録日)
著者Huang, L. / Wang, W. / Zhu, Z. / Li, Q. / Li, M. / Zhou, H. / Xu, Q. / Wen, W. / Wang, Q. / Yu, F.
リンクIucrj / PubMed:39819741
手法X線回折
解像度1.38 - 2.98 Å
構造データ

PDB-7h9k:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr12478
手法: X-RAY DIFFRACTION / 解像度: 1.66 Å

PDB-7h9l:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr14229
手法: X-RAY DIFFRACTION / 解像度: 1.42 Å

PDB-7h9m:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13527
手法: X-RAY DIFFRACTION / 解像度: 1.49 Å

PDB-7h9n:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13347
手法: X-RAY DIFFRACTION / 解像度: 2.35 Å

PDB-7h9o:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13146
手法: X-RAY DIFFRACTION / 解像度: 1.55 Å

PDB-7h9p:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr12541
手法: X-RAY DIFFRACTION / 解像度: 1.64 Å

PDB-7h9q:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13944
手法: X-RAY DIFFRACTION / 解像度: 1.51 Å

PDB-7h9r:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr14452
手法: X-RAY DIFFRACTION / 解像度: 1.69 Å

PDB-7h9s:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with FS-3027
手法: X-RAY DIFFRACTION / 解像度: 2.17 Å

PDB-7h9t:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr12599
手法: X-RAY DIFFRACTION / 解像度: 2.48 Å

PDB-7h9u:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr12864
手法: X-RAY DIFFRACTION / 解像度: 1.94 Å

PDB-7h9v:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr12319
手法: X-RAY DIFFRACTION / 解像度: 1.52 Å

PDB-7h9w:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr12314
手法: X-RAY DIFFRACTION / 解像度: 1.64 Å

PDB-7h9x:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr14128
手法: X-RAY DIFFRACTION / 解像度: 1.47 Å

PDB-7h9y:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with NH-0224
手法: X-RAY DIFFRACTION / 解像度: 2.11 Å

PDB-7h9z:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr12500
手法: X-RAY DIFFRACTION / 解像度: 2.06 Å

PDB-7ha0:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr12546
手法: X-RAY DIFFRACTION / 解像度: 1.47 Å

PDB-7ha1:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with FL0092
手法: X-RAY DIFFRACTION / 解像度: 1.46 Å

PDB-7ha2:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr14256
手法: X-RAY DIFFRACTION / 解像度: 1.73 Å

PDB-7ha3:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr14259
手法: X-RAY DIFFRACTION / 解像度: 1.98 Å

PDB-7ha4:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr14240
手法: X-RAY DIFFRACTION / 解像度: 1.61 Å

PDB-7ha5:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with PS-3550
手法: X-RAY DIFFRACTION / 解像度: 1.53 Å

PDB-7ha6:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with DH-0718
手法: X-RAY DIFFRACTION / 解像度: 1.8 Å

PDB-7ha7:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with PS-5947
手法: X-RAY DIFFRACTION / 解像度: 2.27 Å

PDB-7ha8:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr14439
手法: X-RAY DIFFRACTION / 解像度: 2.22 Å

PDB-7ha9:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13551
手法: X-RAY DIFFRACTION / 解像度: 2 Å

PDB-7haa:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13279
手法: X-RAY DIFFRACTION / 解像度: 1.67 Å

PDB-7hab:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr12700
手法: X-RAY DIFFRACTION / 解像度: 1.5 Å

PDB-7hac:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13324
手法: X-RAY DIFFRACTION / 解像度: 1.68 Å

PDB-7had:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr14363
手法: X-RAY DIFFRACTION / 解像度: 1.59 Å

PDB-7hae:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13215
手法: X-RAY DIFFRACTION / 解像度: 1.73 Å

PDB-7haf:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13854
手法: X-RAY DIFFRACTION / 解像度: 1.61 Å

PDB-7hag:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr14186
手法: X-RAY DIFFRACTION / 解像度: 1.53 Å

PDB-7hah:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with PS-5160
手法: X-RAY DIFFRACTION / 解像度: 1.6 Å

PDB-7hai:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with PS-5525
手法: X-RAY DIFFRACTION / 解像度: 1.65 Å

PDB-7haj:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with PS-4122
手法: X-RAY DIFFRACTION / 解像度: 1.57 Å

PDB-7hak:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with PS-6793
手法: X-RAY DIFFRACTION / 解像度: 1.72 Å

PDB-7hal:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr12580
手法: X-RAY DIFFRACTION / 解像度: 1.65 Å

PDB-7ham:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr14242
手法: X-RAY DIFFRACTION / 解像度: 1.77 Å

PDB-7han:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with PS-3286
手法: X-RAY DIFFRACTION / 解像度: 1.61 Å

PDB-7hao:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13777
手法: X-RAY DIFFRACTION / 解像度: 1.83 Å

PDB-7hap:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13088
手法: X-RAY DIFFRACTION / 解像度: 2.35 Å

PDB-7haq:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13428
手法: X-RAY DIFFRACTION / 解像度: 1.55 Å

PDB-7har:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr12616
手法: X-RAY DIFFRACTION / 解像度: 1.77 Å

PDB-7has:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr12355
手法: X-RAY DIFFRACTION / 解像度: 2.08 Å

PDB-7hat:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr12860
手法: X-RAY DIFFRACTION / 解像度: 2.04 Å

PDB-7hau:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13098
手法: X-RAY DIFFRACTION / 解像度: 1.75 Å

PDB-7hav:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr12879
手法: X-RAY DIFFRACTION / 解像度: 2.45 Å

PDB-7haw:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr12961
手法: X-RAY DIFFRACTION / 解像度: 1.65 Å

PDB-7hax:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13909
手法: X-RAY DIFFRACTION / 解像度: 2.29 Å

PDB-7hay:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr14271
手法: X-RAY DIFFRACTION / 解像度: 2.27 Å

PDB-7haz:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr12919
手法: X-RAY DIFFRACTION / 解像度: 1.68 Å

PDB-7hb0:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr12780
手法: X-RAY DIFFRACTION / 解像度: 1.78 Å

PDB-7hb1:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr12936
手法: X-RAY DIFFRACTION / 解像度: 1.66 Å

PDB-7hb2:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with FL0184
手法: X-RAY DIFFRACTION / 解像度: 1.67 Å

PDB-7hb3:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13043
手法: X-RAY DIFFRACTION / 解像度: 2.34 Å

PDB-7hb4:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr14472
手法: X-RAY DIFFRACTION / 解像度: 1.87 Å

PDB-7hb5:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13078
手法: X-RAY DIFFRACTION / 解像度: 1.8 Å

PDB-7hb6:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13755
手法: X-RAY DIFFRACTION / 解像度: 2.09 Å

PDB-7hb7:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr12696
手法: X-RAY DIFFRACTION / 解像度: 2.98 Å

PDB-7hb8:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13480
手法: X-RAY DIFFRACTION / 解像度: 1.85 Å

PDB-7hb9:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13464
手法: X-RAY DIFFRACTION / 解像度: 1.89 Å

PDB-7hba:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13425
手法: X-RAY DIFFRACTION / 解像度: 2.15 Å

PDB-7hbb:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13430
手法: X-RAY DIFFRACTION / 解像度: 1.84 Å

PDB-7hbc:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13229
手法: X-RAY DIFFRACTION / 解像度: 1.86 Å

PDB-7hbd:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr12810
手法: X-RAY DIFFRACTION / 解像度: 1.8 Å

PDB-7hbe:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr12771
手法: X-RAY DIFFRACTION / 解像度: 1.79 Å

PDB-7hbf:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr12938
手法: X-RAY DIFFRACTION / 解像度: 1.97 Å

PDB-7hbg:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13237
手法: X-RAY DIFFRACTION / 解像度: 1.69 Å

PDB-7hbh:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13518
手法: X-RAY DIFFRACTION / 解像度: 1.8 Å

PDB-7hbj:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13498
手法: X-RAY DIFFRACTION / 解像度: 2.65 Å

PDB-7hbk:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13232
手法: X-RAY DIFFRACTION / 解像度: 2.14 Å

PDB-7hbl:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr12214
手法: X-RAY DIFFRACTION / 解像度: 1.65 Å

PDB-7hbm:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13278
手法: X-RAY DIFFRACTION / 解像度: 2.21 Å

PDB-7hbn:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13145
手法: X-RAY DIFFRACTION / 解像度: 1.99 Å

PDB-7hbo:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13368
手法: X-RAY DIFFRACTION / 解像度: 2.07 Å

PDB-7hbp:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with Fr13188
手法: X-RAY DIFFRACTION / 解像度: 1.91 Å

PDB-7hbq:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with FS-2731
手法: X-RAY DIFFRACTION / 解像度: 2.73 Å

PDB-7hbr:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with AS-5576
手法: X-RAY DIFFRACTION / 解像度: 1.91 Å

PDB-7hbs:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with 10X-0806
手法: X-RAY DIFFRACTION / 解像度: 1.38 Å

PDB-7hbt:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with PS-3621
手法: X-RAY DIFFRACTION / 解像度: 1.38 Å

PDB-7hbu:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with CC-0741
手法: X-RAY DIFFRACTION / 解像度: 1.44 Å

PDB-7hbv:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with PS-4833
手法: X-RAY DIFFRACTION / 解像度: 1.56 Å

PDB-7hbw:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with PS-4774
手法: X-RAY DIFFRACTION / 解像度: 1.91 Å

PDB-7hbx:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with AS-5591
手法: X-RAY DIFFRACTION / 解像度: 2.25 Å

PDB-7hby:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with 9R-0342
手法: X-RAY DIFFRACTION / 解像度: 1.82 Å

PDB-7hbz:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with 6R-0009
手法: X-RAY DIFFRACTION / 解像度: 1.44 Å

PDB-7hc0:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with 4W-0801
手法: X-RAY DIFFRACTION / 解像度: 1.66 Å

PDB-7hc1:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with 10T-0263
手法: X-RAY DIFFRACTION / 解像度: 2.13 Å

PDB-7hc2:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with 2X-5009
手法: X-RAY DIFFRACTION / 解像度: 1.6 Å

PDB-7hc3:
PanDDA analysis group deposition -- Crystal structure of HSP90N in complex with 3T-0629
手法: X-RAY DIFFRACTION / 解像度: 2.22 Å

化合物

PDB-1aw3:
THE SOLUTION NMR STRUCTURE OF OXIDIZED RAT MICROSOMAL CYTOCHROME B5, MINIMIZED AVERAGE STRUCTURE

ChemComp-HOH:
WATER

PDB-1aw6:
GAL4 (CD), NMR, 24 STRUCTURES

PDB-1aw8:
PYRUVOYL DEPENDENT ASPARTATE DECARBOXYLASE

PDB-1axz:
ERYTHRINA CORALLODENDRON LECTIN IN COMPLEX WITH D-GALACTOSE

PDB-1axa:
ACTIVE-SITE MOBILITY IN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 PROTEASE AS DEMONSTRATED BY CRYSTAL STRUCTURE OF A28S MUTANT

ChemComp-HX8:
4-phenoxyphenol / 4-フェノキシフェノ-ル

PDB-1ax0:
ERYTHRINA CORALLODENDRON LECTIN IN COMPLEX WITH N-ACTYLGALACTOSAMINE

PDB-1ax2:
ERYTHRINA CORALLODENDRON LECTIN IN COMPLEX WITH N-ACETYLLACTOSAMINE

PDB-1axj:
FMN-BINDING PROTEIN FROM DESULFOVIBRIO VULGARIS (MIYAZAKI F), NMR, 20 STRUCTURES

PDB-1axl:
SOLUTION CONFORMATION OF THE (-)-TRANS-ANTI-[BP]DG ADDUCT OPPOSITE A DELETION SITE IN DNA DUPLEX D(CCATC-[BP]G-CTACC)D(GGTAG--GATGG), NMR, 6 STRUCTURES

ChemComp-8K2:
5-chloranylthiophene-2-sulfonamide / 5-クロロチオフェン-2-スルホンアミド

PDB-1axo:
STRUCTURAL ALIGNMENT OF THE (+)-TRANS-ANTI-[BP]DG ADDUCT POSITIONED OPPOSITE DC AT A DNA TEMPLATE-PRIMER JUNCTION, NMR, 6 STRUCTURES

ChemComp-SLS:
3,4-dihydro-2~{H}-chromene-6-carboxamide

PDB-1axd:
STRUCTURE OF GLUTATHIONE S-TRANSFERASE-I BOUND WITH THE LIGAND LACTOYLGLUTATHIONE


PDB 未公開エントリ

PDB-1axf: Unknown entry

PDB-1axh:
ATRACOTOXIN-HVI FROM HADRONYCHE VERSUTA (AUSTRALIAN FUNNEL-WEB SPIDER, NMR, 20 STRUCTURES

ChemComp-54F:
3-(pyridin-2-yloxy)aniline / 3-(2-ピリジルオキシ)アニリン

PDB-1ax6:
SOLUTION STRUCTURE OF THE [AF]-C8-DG ADDUCT OPPOSITE A-2 DELETION SITE IN THE NARI HOT SPOT SEQUENCE CONTEXT; NMR, 6 STRUCTURES

PDB-1ax8:
Human obesity protein, leptin

PDB-1aw0:
FOURTH METAL-BINDING DOMAIN OF THE MENKES COPPER-TRANSPORTING ATPASE, NMR, 20 STRUCTURES

PDB-1aw1:
TRIOSEPHOSPHATE ISOMERASE OF VIBRIO MARINUS COMPLEXED WITH 2-PHOSPHOGLYCOLATE

PDB-1aw2:
TRIOSEPHOSPHATE ISOMERASE OF VIBRIO MARINUS

PDB-1aw5:
5-AMINOLEVULINATE DEHYDRATASE FROM SACCHAROMYCES CEREVISIAE

PDB-1aw7:
Q136A MUTANT OF TOXIC SHOCK SYNDROME TOXIN-1 FROM S. AUREUS

PDB-1axy:
ERYTHRINA CORALLODENDRON LECTIN

PDB-1aw9:
STRUCTURE OF GLUTATHIONE S-TRANSFERASE III IN APO FORM

PDB-1axb:
TEM-1 BETA-LACTAMASE FROM ESCHERICHIA COLI INHIBITED WITH AN ACYLATION TRANSITION STATE ANALOG

PDB-1axc:
HUMAN PCNA

PDB-1ax1:
ERYTHRINA CORALLODENDRON LECTIN IN COMPLEX WITH LACTOSE

PDB-1ax3:
SOLUTION NMR STRUCTURE OF B. SUBTILIS IIAGLC, 16 STRUCTURES

PDB-1axk:
ENGINEERED BACILLUS BIFUNCTIONAL ENZYME GLUXYN-1

PDB-1axm:
HEPARIN-LINKED BIOLOGICALLY-ACTIVE DIMER OF FIBROBLAST GROWTH FACTOR

PDB-1axn:
THE HIGH RESOLUTION STRUCTURE OF ANNEXIN III SHOWS DIFFERENCES WITH ANNEXIN V

PDB-1axp:
DNA DUPLEX CONTAINING A PURINE-RICH STRAND, NMR, 6 STRUCTURES

PDB-1axq:
FERRICYANIDE OXIDIZED FDI

PDB-1axe:
CRYSTAL STRUCTURE OF THE ACTIVE-SITE MUTANT PHE93->TRP OF HORSE LIVER ALCOHOL DEHYDROGENASE IN COMPLEX WITH NAD AND INHIBITOR TRIFLUOROETHANOL

PDB-1axg:
CRYSTAL STRUCTURE OF THE VAL203->ALA MUTANT OF LIVER ALCOHOL DEHYDROGENASE COMPLEXED WITH COFACTOR NAD AND INHIBITOR TRIFLUOROETHANOL SOLVED TO 2.5 ANGSTROM RESOLUTION

PDB-1ax4:
TRYPTOPHANASE FROM PROTEUS VULGARIS

PDB-1ax5:
Unknown entry

PDB-1ax7:
SOLUTION STRUCTURE OF THE [AF]-C8-DG ADDUCT POSITIONED AT A TEMPLATE-PRIMER JUNCTION, NMR, 6 STRUCTURES

PDB-1ax9:
ACETYLCHOLINESTERASE COMPLEXED WITH EDROPHONIUM, LAUE DATA

ChemComp-FMQ:
[1-(4-fluorophenyl)-5-methyl-1H-pyrazol-4-yl]methanol / 1-(4-フルオロフェニル)-5-メチル-1H-ピラゾ-ル-4-メタノ-ル

PDB-1ayu:
CRYSTAL STRUCTURE OF CYSTEINE PROTEASE HUMAN CATHEPSIN K IN COMPLEX WITH A COVALENT SYMMETRIC BISCARBOHYDRAZIDE INHIBITOR

PDB-1ayw:
CRYSTAL STRUCTURE OF CYSTEINE PROTEASE HUMAN CATHEPSIN K IN COMPLEX WITH A COVALENT BENZYLOXYBENZOYLCARBOHYDRAZIDE INHIBITOR

PDB-1ayy:
GLYCOSYLASPARAGINASE

PDB-1ay5:
AROMATIC AMINO ACID AMINOTRANSFERASE COMPLEX WITH MALEATE

PDB-1aya:
CRYSTAL STRUCTURES OF PEPTIDE COMPLEXES OF THE AMINO-TERMINAL SH2 DOMAIN OF THE SYP TYROSINE PHOSPHATASE

PDB-1ay0:
IDENTIFICATION OF CATALYTICALLY IMPORTANT RESIDUES IN YEAST TRANSKETOLASE

PDB-1ayd:
CRYSTAL STRUCTURES OF PEPTIDE COMPLEXES OF THE AMINO-TERMINAL SH2 DOMAIN OF THE SYP TYROSINE PHOSPHATASE

PDB-1ayf:
BOVINE ADRENODOXIN (OXIDIZED)


PDB 未公開エントリ

PDB-1ayh: Unknown entry

PDB-1ayi:
COLICIN E7 IMMUNITY PROTEIN IM7

PDB-1ayk:
INHIBITOR-FREE CATALYTIC FRAGMENT OF HUMAN FIBROBLAST COLLAGENASE, NMR, 30 STRUCTURES

ChemComp-A7Q:
(6-phenoxypyridin-3-yl)methanol

PDB-1ay2:
STRUCTURE OF THE FIBER-FORMING PROTEIN PILIN AT 2.6 ANGSTROMS RESOLUTION

PDB-1aym:
HUMAN RHINOVIRUS 16 COAT PROTEIN AT HIGH RESOLUTION

PDB-1axv:
SOLUTION NMR STRUCTURE OF THE [BP]DA ADDUCT OPPOSITE DT IN A DNA DUPLEX, 6 STRUCTURES

ChemComp-6RO:
~{N}-(4-chlorophenyl)methanesulfonamide / N-(4-クロロフェニル)メタンスルホンアミド

ChemComp-72R:
5-fluoranyl-1~{H}-indole-2,3-dione / 5-フルオロ-1H-インド-ル-2,3-ジオン

ChemComp-WP1:
2,2-dimethyl-2,3-dihydro-1-benzofuran-7-carboxamide

PDB-1axs:
MATURE OXY-COPE CATALYTIC ANTIBODY WITH HAPTEN

PDB-1ayn:
HUMAN RHINOVIRUS 16 COAT PROTEIN

PDB-1ayo:
RECEPTOR BINDING DOMAIN OF BOVINE ALPHA-2-MACROGLOBULIN

PDB-1ay4:
AROMATIC AMINO ACID AMINOTRANSFERASE WITHOUT SUBSTRATE

PDB-1ayv:
CRYSTAL STRUCTURE OF CYSTEINE PROTEASE HUMAN CATHEPSIN K IN COMPLEX WITH A COVALENT THIAZOLHYDRAZIDE INHIBITOR

PDB-1ayx:
CRYSTAL STRUCTURE OF GLUCOAMYLASE FROM SACCHAROMYCOPSIS FIBULIGERA AT 1.7 ANGSTROMS

PDB-1ayz:
CRYSTAL STRUCTURE OF THE SACCHAROMYCES CEREVISIAE UBIQUITIN-CONJUGATING ENZYME RAD6 (UBC2) AT 2.6A RESOLUTION

PDB-1ay6:
THROMBIN INHIBITOR FROM THEONALLA, CYCLOTHEANAMIDE-BASED MACROCYCLIC TRIPEPTIDE MOTIF

PDB-1ayb:
CRYSTAL STRUCTURES OF PEPTIDE COMPLEXES OF THE AMINO-TERMINAL SH2 DOMAIN OF THE SYP TYROSINE PHOSPHATASE

PDB-1ayc:
CRYSTAL STRUCTURES OF PEPTIDE COMPLEXES OF THE AMINO-TERMINAL SH2 DOMAIN OF THE SYP TYROSINE PHOSPHATASE

PDB-1aye:
HUMAN PROCARBOXYPEPTIDASE A2

PDB-1ayg:
SOLUTION STRUCTURE OF CYTOCHROME C-552, NMR, 20 STRUCTURES

ChemComp-9TW:
3-chloranyl-4-fluoranyl-benzamide

PDB-1ayj:
DETERMINATION OF THE THREE-DIMENSIONAL SOLUTION STRUCTURE OF RAPHANUS SATIVUS ANTIFUNGAL PROTEIN 1 (RS-AFP1) BY 1H NMR, 20 STRUCTURES

PDB-1abl:
Unknown entry

PDB-1ay1:
ANTI TAQ FAB TP7

PDB-1ayl:
PHOSPHOENOLPYRUVATE CARBOXYKINASE

PDB-1axu:
SOLUTION NMR STRUCTURE OF THE [AP]DG ADDUCT OPPOSITE DA IN A DNA DUPLEX, NMR, 9 STRUCTURES

PDB-1axw:
E. COLI THYMIDYLATE SYNTHASE IN COMPLEX WITH METHOTREXATE (MTX) AND 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (DUMP)

PDB-1axx:
THE SOLUTION STRUCTURE OF OXIDIZED RAT MICROSOMAL CYTOCHROME B5, NMR, 19 STRUCTURES

PDB-1axr:
COOPERATIVITY BETWEEN HYDROGEN-BONDING AND CHARGE-DIPOLE INTERACTIONS IN THE INHIBITION OF BETA-GLYCOSIDASES BY AZOLOPYRIDINES: EVIDENCE FROM A STUDY WITH GLYCOGEN PHOSPHORYLASE B

ChemComp-KXQ:
1~{H}-indole-7-carboxylic acid / 1H-インド-ル-7-カルボン酸

PDB-1axt:
IMMUNE VERSUS NATURAL SELECTION: ANTIBODY ALDOLASES WITH THE RATES OF NATURAL ENZYMES

PDB-1ay3:
Nodularin from Nodularia spumigena

PDB-1ay7:
RIBONUCLEASE SA COMPLEX WITH BARSTAR

PDB-1ayp:
A PROBE MOLECULE COMPOSED OF SEVENTEEN PERCENT OF TOTAL DIFFRACTING MATTER GIVES CORRECT SOLUTIONS IN MOLECULAR REPLACEMENT


PDB 未公開エントリ

PDB-1ayq: Unknown entry

PDB-1ayr:
ARRESTIN FROM BOVINE ROD OUTER SEGMENTS

PDB-1ays:
Unknown entry

PDB-1aw4:
STRUCTURAL BASIS OF DNA FOLDING AND RECOGNITION IN AMP-DNA APTAMER COMPLEX, NMR, 7 STRUCTURES

PDB-1ayt:
Unknown entry

由来
  • homo sapiens (ヒト)
キーワードCHAPERONE / Crystallographic Fragment Screening; Fragment-Based Drug Discovery (FBDD); Heat shock protein 90 (HSP90)

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万見文献について

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お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月：コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
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関連情報:Q: 「EMD」とは何ですか？ / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例：em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見文献

EMDB/PDB/SASBDBから引用されている文献のデータベース

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  • Pubmedのデータを利用しています

関連情報:EMDB / PDB / SASBDB / 万見 (Yorodumi) / EMN文献 / 新しいEM Navigatorと万見の変更点

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