[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 80 items for (author: srinivasan & k)

EMDB-71770:
Structure of human serotonin transporter bound to small molecule zPZd in lipid nanodisc and NaCl
Method: single particle / : Billesboelle CB, Manglik A

EMDB-71775:
Locally-refined Mu-Opioid Receptor bound with novel compound 0505
Method: single particle / : Kim JY, Wu Y, Manglik A, Shoichet BK

PDB-9pns:
Structure of human serotonin transporter bound to small molecule zPZd in lipid nanodisc and NaCl
Method: single particle / : Billesboelle CB, Manglik A

PDB-9ppq:
Locally-refined Mu-Opioid Receptor bound with novel compound 0505 (3-[({[(1P)-1-(3-chlorophenyl)-1H-pyrazol-3-yl]methyl}amino)methyl]phenol)
Method: single particle / : Kim JY, Wu Y, Manglik A, Shoichet BK

EMDB-70119:
Pr/Pr homodimer of Stigmatella aurantiaca bacteriophytochrome 2
Method: single particle / : Karki P, Stojkovic EA, Schmidt M

EMDB-71783:
Locally-refined structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and compound Z7149
Method: single particle / : Srinivasan K, Wu Y, Billesboelle C, Kim JY, Manglik A, Shoichet BK

PDB-9pqd:
Locally-refined structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and compound Z7149
Method: single particle / : Srinivasan K, Wu Y, Billesboelle C, Kim JY, Manglik A, Shoichet BK

EMDB-71718:
Locally-refined structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and N-(5-methylnaphthalen-1-yl)pyridin-4-amine (compound 4905)
Method: single particle / : Srinivasan K, Xu X, Mailhot O, Manglik A, Shoichet B

PDB-9pln:
Locally-refined structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and N-(5-methylnaphthalen-1-yl)pyridin-4-amine (compound 4905)
Method: single particle / : Srinivasan K, Xu X, Mailhot O, Manglik A, Shoichet B

EMDB-64825:
Structure of FtsZ1 in complex with GMPCPP from Candidatus Odinarchaeota
Method: helical / : Bose S, Kutti RV

PDB-9v7v:
Structure of FtsZ1 in complex with GMPCPP from Candidatus Odinarchaeota
Method: helical / : Bose S, Kutti RV

EMDB-71719:
Structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and N-(5-methylnaphthalen-1-yl)pyridin-4-amine (compound 4905)
Method: single particle / : Srinivasan K, Xu X, Mailhot O, Manglik A, Shoichet B

PDB-9plo:
Structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and N-(5-methylnaphthalen-1-yl)pyridin-4-amine (compound 4905)
Method: single particle / : Srinivasan K, Xu X, Mailhot O, Manglik A, Shoichet B

EMDB-39462:
Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis
Method: single particle / : Banerjee A, Srinivasan K, Sengupta J

PDB-8yp6:
Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis
Method: single particle / : Banerjee A, Srinivasan K, Sengupta J

EMDB-19019:
Structure of Sen1 bound RNA Polymerase II pre-termination complex
Method: single particle / : Rengachari S, Lidscreiber M, Cramer P

EMDB-19020:
Structure of Sen1-RNA complex
Method: single particle / : Rengachari S, Lidscreiber M, Cramer P

EMDB-19021:
Structure of Sen1-ADP.BeF3-RNA complex
Method: single particle / : Rengachari S, Lidscreiber M, Cramer P

EMDB-19022:
Structure of Sen1-ADP.BeF3 bound RNA Polymerase II pre-termination complex
Method: single particle / : Rengachari S, Lidscreiber M, Cramer P

PDB-8ram:
Structure of Sen1 bound RNA Polymerase II pre-termination complex
Method: single particle / : Rengachari S, Lidscreiber M, Cramer P

PDB-8ran:
Structure of Sen1-RNA complex
Method: single particle / : Rengachari S, Lidscreiber M, Cramer P

PDB-8rao:
Structure of Sen1-ADP.BeF3-RNA complex
Method: single particle / : Rengachari S, Lidscreiber M, Cramer P

PDB-8rap:
Structure of Sen1-ADP.BeF3 bound RNA Polymerase II pre-termination complex
Method: single particle / : Rengachari S, Lidscreiber M, Cramer P

EMDB-42448:
Pr state of Stigmatella aurantiaca bacteriophytochrome 2
Method: single particle / : Malla TN, Schmidt M, Stojkovic EA

EMDB-42450:
Pr/Pfr heterodimer (hybrid) state of Stigmatella aurantiaca bacteriophytochrome 2
Method: single particle / : Malla TN, Schmidt M, Stojkovic EA

EMDB-42452:
Pfr state of Stigmatella aurantiaca bacteriophytochrome 2
Method: single particle / : Malla TN, Schmidt M, Stojkovic EA

EMDB-42469:
Pr/Pfr heterodimeric state of photosensory core module of Stigmatella aurantiaca bacteriophytochrome 2
Method: single particle / : Malla TN, Schmidt M, Stojkovic EA

EMDB-42472:
Pfr state of photosensory core module of Stigmatella aurantiaca bacteriophytochrome 2
Method: single particle / : Malla TN, Schmidt M, Stojkovic EA

PDB-8uph:
Pr state of Stigmatella aurantiaca bacteriophytochrome 2
Method: single particle / : Malla TN, Schmidt M, Stojkovic EA

PDB-8upk:
Pr/Pfr heterodimer (hybrid) state of Stigmatella aurantiaca bacteriophytochrome 2
Method: single particle / : Malla TN, Schmidt M, Stojkovic EA

PDB-8upm:
Pfr state of Stigmatella aurantiaca bacteriophytochrome 2
Method: single particle / : Malla TN, Schmidt M, Stojkovic EA

PDB-8uqi:
Pr/Pfr heterodimeric state of photosensory core module of Stigmatella aurantiaca bacteriophytochrome 2
Method: single particle / : Malla TN, Schmidt M, Stojkovic EA

PDB-8uqk:
Pfr state of photosensory core module of Stigmatella aurantiaca bacteriophytochrome 2
Method: single particle / : Malla TN, Schmidt M, Stojkovic EA

EMDB-37007:
Mycobacterium smegmatis 50S ribosomal subunit-HflX complex
Method: single particle / : Srinivasan K, Banerjee A, Sengupta J

EMDB-38788:
Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin
Method: single particle / : Srinivasan K, Banerjee A, Sengupta J

PDB-8kab:
Mycobacterium smegmatis 50S ribosomal subunit-HflX complex
Method: single particle / : Srinivasan K, Banerjee A, Sengupta J

PDB-8xz3:
Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin
Method: single particle / : Srinivasan K, Banerjee A, Sengupta J

EMDB-14849:
Nup93 in complex with 5-Nup93 inhibitory NB and 15-Nup93 tracking NB
Method: single particle / : Fu Z, Guttler T, Colom MS

PDB-7zox:
Nup93 in complex with xhNup93-Nb4i and xNup93-Nb2t
Method: single particle / : Fu Z, Guttler T, Colom MS

EMDB-36137:
Cryo-EM structure of Holo form of ScBfr with O symmetry
Method: single particle / : Jobichen C, Sivaraman J

EMDB-36139:
Cryo-EM structure of Holo form of ScBfr in C1 symmetry
Method: single particle / : Jobichen C, Sivaraman J

EMDB-36140:
Cryo-EM structure of Fe-biomineral from bacterioferritin
Method: single particle / : Jobichen C, Sivaraman J

PDB-8jax:
Cryo-EM structure of Holo form of ScBfr with O symmetry
Method: single particle / : Jobichen C, Sivaraman J

PDB-8jb0:
Cryo-EM structure of Holo form of ScBfr in C1 symmetry
Method: single particle / : Jobichen C, Sivaraman J

EMDB-33639:
Cryo-EM structure of Apo form of ScBfr
Method: single particle / : Jobichen C, Sivaraman J

EMDB-33640:
Cryo-EM structure of bacterioferritin holoform 1a
Method: single particle / : Jobichen C, Sivaraman J

EMDB-33645:
Cryo-EM structure if bacterioferritin holoform
Method: single particle / : Jobichen C, Sivaraman J

PDB-7y6f:
Cryo-EM structure of Apo form of ScBfr
Method: single particle / : Jobichen C, Sivaraman J

PDB-7y6g:
Cryo-EM structure of bacterioferritin holoform 1a
Method: single particle / : Jobichen C, Sivaraman J

PDB-7y6p:
Cryo-EM structure if bacterioferritin holoform
Method: single particle / : Jobichen C, Sivaraman J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more