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TitleCryo-EM structures reveal the molecular mechanism of HflX-mediated erythromycin resistance in mycobacteria.
Journal, issue, pagesStructure, Year 2024
Publish dateJul 8, 2024
AuthorsKrishnamoorthi Srinivasan / Aneek Banerjee / Jayati Sengupta /
PubMed AbstractMycobacterial HflX confers resistance against macrolide antibiotics. However, the exact molecular mechanism is poorly understood. To gain further insights, we determined the cryo-EM structures of M. ...Mycobacterial HflX confers resistance against macrolide antibiotics. However, the exact molecular mechanism is poorly understood. To gain further insights, we determined the cryo-EM structures of M. smegmatis (Msm) HflX-50S subunit and 50S subunit-erythromycin (ERY) complexes at a global resolution of approximately 3 Å. A conserved nucleotide A2286 at the gate of nascent peptide exit tunnel (NPET) adopts a swayed conformation in HflX-50S complex and interacts with a loop within the linker helical (LH) domain of MsmHflX that contains an additional 9 residues insertion. Interestingly, the swaying of this nucleotide, which is usually found in the non-swayed conformation, is induced by erythromycin binding. Furthermore, we observed that erythromycin decreases HflX's ribosome-dependent GTP hydrolysis, resulting in its enhanced binding and anti-association activity on the 50S subunit. Our findings reveal how mycobacterial HflX senses the presence of macrolides at the peptide tunnel entrance and confers antibiotic resistance in mycobacteria.
External linksStructure / PubMed:39029461
MethodsEM (single particle)
Resolution3.3 - 3.6 Å
Structure data

EMDB-37007, PDB-8kab:
Mycobacterium smegmatis 50S ribosomal subunit-HflX complex
Method: EM (single particle) / Resolution: 3.3 Å

EMDB-38788, PDB-8xz3:
Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin
Method: EM (single particle) / Resolution: 3.6 Å

Chemicals

ChemComp-GNP:
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER / GppNHp, GMPPNP, energy-carrying molecule analogue*YM

ChemComp-ERY:
ERYTHROMYCIN A / antibiotic*YM

Source
  • mycolicibacterium smegmatis mc2 155 (bacteria)
KeywordsRIBOSOME / Complex / Antibiotic

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