[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database
Q: What is the data source of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 18,570 items (all data)

EMDB-21669:
HTR2A bound to 25-CN-NBOH in complex with a mini-Galpha-q protein, beta/gamma subunits and an active-state stabilizing single-chain variable fragment (scFv16) obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Skiniotis G, Roth B, Kim K, Panova O

PDB-6wha:
HTR2A bound to 25-CN-NBOH in complex with a mini-Galpha-q protein, beta/gamma subunits and an active-state stabilizing single-chain variable fragment (scFv16) obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Skiniotis G, Roth B, Kim K, Panova O

EMDB-11357:
Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state A (Poly-Ala)
Method: single particle / : Cheng J, Lau B, Venuta GL, Berninghausen O, Hurt E, Beckmann R

EMDB-11358:
Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2
Method: single particle / : Cheng J, Lau B, Venuta GL, Berninghausen O, Hurt E, Beckmann R

EMDB-11359:
Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1
Method: single particle / : Cheng J, Lau B, Venuta GL, Berninghausen O, Hurt E, Beckmann R

EMDB-11360:
Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1
Method: single particle / : Cheng J, Lau B, Venuta GL, Berninghausen O, Hurt E, Beckmann R

EMDB-11361:
Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)
Method: single particle / : Cheng J, Lau B, Venuta GL, Berninghausen O, Hurt E, Beckmann R

EMDB-11362:
Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)
Method: single particle / : Cheng J, Lau B, Venuta GL, Berninghausen O, Hurt E, Beckmann R

EMDB-11363:
Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C
Method: single particle / : Cheng J, Lau B, Venuta GL, Berninghausen O, Hurt E, Beckmann R

PDB-6zqa:
Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state A (Poly-Ala)
Method: single particle / : Cheng J, Lau B, Venuta GL, Berninghausen O, Hurt E, Beckmann R

PDB-6zqb:
Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2
Method: single particle / : Cheng J, Lau B, Venuta GL, Berninghausen O, Hurt E, Beckmann R

PDB-6zqc:
Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1
Method: single particle / : Cheng J, Lau B, Venuta GL, Berninghausen O, Hurt E, Beckmann R

PDB-6zqd:
Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1
Method: single particle / : Cheng J, Lau B, Venuta GL, Berninghausen O, Hurt E, Beckmann R

PDB-6zqe:
Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)
Method: single particle / : Cheng J, Lau B, Venuta GL, Berninghausen O, Hurt E, Beckmann R

PDB-6zqf:
Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)
Method: single particle / : Cheng J, Lau B, Venuta GL, Berninghausen O, Hurt E, Beckmann R

PDB-6zqg:
Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C
Method: single particle / : Cheng J, Lau B, Venuta GL, Berninghausen O, Hurt E, Beckmann R

EMDB-11688:
SARS-CoV-2 Spike Glycoprotein with 3 ACE2 Bound
Method: single particle / : Benton DJ, Wrobel AG, Rosenthal PB, Gamblin SJ

PDB-7a98:
SARS-CoV-2 Spike Glycoprotein with 3 ACE2 Bound
Method: single particle / : Benton DJ, Wrobel AG, Rosenthal PB, Gamblin SJ

EMDB-22645:
Murine polyomavirus (icosahedral reconstruction)
Method: single particle / : Goetschius DJ, Hafenstein SL

EMDB-22646:
Murine polyomavirus with 8A7H5 Fab (icosahedral reconstruction)
Method: single particle / : Goetschius DJ, Hafenstein SL

EMDB-21981:
PARP2/HPF1_Nucleosome complex
Method: single particle / : Halic M, Bilokapic S

EMDB-21982:
PARP2/HPF1_Nucleosome complex
Method: single particle / : Halic M, Bilokapic S

EMDB-11266:
E2 core of the fungal Pyruvate dehydrogenase complex with flexible/oversym. periphery, structured core and oversym. interior
Method: single particle / : Forsberg BO, Lindahl E, Aibara S, Howard RJ, Mortezaei N

EMDB-11267:
E2 core of the fungal Pyruvate dehydrogenase complex with flexible/oversym. periphery, structured core and S4X-structured interior.
Method: single particle / : Forsberg BO, Lindahl E, Aibara S, Howard RJ, Mortezaei N

EMDB-11268:
E2 core of the fungal Pyruvate dehydrogenase complex with flexible/oversym. periphery, structured core and S4Y-structured interior.
Method: single particle / : Forsberg BO, Aibara S, Howard RJ, Mortezaei N, Lindahl E

EMDB-11269:
E2 core of the fungal Pyruvate dehydrogenase complex with absent periphery, structured core and empty interior.
Method: single particle / : Forsberg BO, Lindahl E, Aibara S, Howard RJ, Mortezaei N

EMDB-11270:
E2 core of the fungal Pyruvate dehydrogenase complex with asymmetric interior PX30 component
Method: single particle / : Forsberg BO, Howard RJ, Aibara S, Mortesaei N, Lindahl E

EMDB-11271:
E2 core of the fungal Pyruvate dehydrogenase complex with asymmetric interior PX261 component
Method: single particle / : Forsberg BO, Lindahl E, Aibara S, Howard RJ, Mortezaei N

PDB-6zlm:
Dihydrolipoyllysine-residue acetyltransferase component of fungal pyruvate dehydrogenase complex with protein X bound
Method: single particle / : Forsberg BO, Aibara S, Howard RJ, Mortezaei N, Lindahl E

PDB-6zlo:
E2 core of the fungal Pyruvate dehydrogenase complex with asymmetric interior PX30 component
Method: single particle / : Forsberg BO, Howard RJ, Aibara S, Mortesaei N, Lindahl E

EMDB-11115:
Human Picobirnavirus CP VLP
Method: single particle / : Ortega-Esteban A, Mata CP, Rodriguez-Espinosa MJ, Luque D, Irigoyen N, Rodriguez JM, de Pablo PJ, Caston JR

EMDB-11116:
Human Picobirnavirus Ht-CP VLP
Method: single particle / : Ortega-Esteban A, Mata CP, Rodriguez-Espinosa MJ, Luque D, Irigoyen N, Rodriguez JM, de Pablo PJ, Caston JR

PDB-6z8d:
Human Picobirnavirus CP VLP
Method: single particle / : Ortega-Esteban A, Mata CP, Rodriguez-Espinosa MJ, Luque D, Irigoyen N, Rodriguez JM, de Pablo PJ, Caston JR

PDB-6z8e:
Human Picobirnavirus Ht-CP VLP
Method: single particle / : Ortega-Esteban A, Mata CP, Rodriguez-Espinosa MJ, Luque D, Irigoyen N, Rodriguez JM, de Pablo PJ, Caston JR

EMDB-10573:
Ovine ATP synthase 1a state
Method: single particle / : Pinke G, Zhou L, Sazanov LA

EMDB-11127:
Fo domain of Ovine ATP synthase
Method: single particle / : Pinke G, Zhou L, Sazanov LA

PDB-6tt7:
Ovine ATP synthase 1a state
Method: single particle / : Pinke G, Zhou L, Sazanov LA

PDB-6za9:
Fo domain of Ovine ATP synthase
Method: single particle / : Pinke G, Zhou L, Sazanov LA

EMDB-22586:
Structure of the Bacterial Ribosome at 2 Angstrom Resolution (composite structure)
Method: single particle / : Watson ZL, Ward FR, Meheust R, Ad O, Schepartz A, Banfield JF, Cate JHD

EMDB-22607:
Structure of the Bacterial Ribosome at 2 Angstrom Resolution (70S ribosome)
Method: single particle / : Watson ZL, Ward FR, Meheust R, Ad O, Schepartz A, Banfield JF, Cate JHD

EMDB-22614:
Structure of the Bacterial Ribosome at 2 Angstrom Resolution (50S focused refinement)
Method: single particle / : Watson ZL, Ward FR, Meheust R, Ad O, Schepartz A, Banfield JF, Cate JHD

EMDB-22632:
Structure of the Bacterial Ribosome at 2 Angstrom Resolution (30S focused refinement)
Method: single particle / : Watson ZL, Ward FR, Meheust R, Ad O, Schepartz A, Banfield JF, Cate JHD

EMDB-22635:
Structure of the Bacterial Ribosome at 2 Angstrom Resolution (30S head domain focused refinement)
Method: single particle / : Watson ZL, Ward FR, Meheust R, Ad O, Schepartz A, Banfield JF, Cate JHD

EMDB-22636:
Structure of the Bacterial Ribosome at 2 Angstrom Resolution (30S platform domain focused refinement)
Method: single particle / : Watson ZL, Ward FR, Meheust R, Ad O, Schepartz A, Banfield JF, Cate JHD

EMDB-22637:
Structure of the Bacterial Ribosome at 2 Angstrom Resolution (50S central protuberance focused refinement)
Method: single particle / : Watson ZL, Ward FR, Meheust R, Ad O, Schepartz A, Banfield JF, Cate JHD

PDB-7k00:
Structure of the Bacterial Ribosome at 2 Angstrom Resolution
Method: single particle / : Watson ZL, Ward FR, Meheust R, Ad O, Schepartz A, Banfield JF, Cate JHD

EMDB-10694:
Structure of human cGAS (K394E) bound to the nucleosome
Method: single particle / : Pathare GR, Cavadini S, Kempf G, Thoma NH

EMDB-10695:
Structure of human cGAS (K394E) bound to the nucleosome (focused refinement of cGAS-NCP subcomplex)
Method: single particle / : Pathare GR, Cavadini S, Kempf G, Thoma NH

EMDB-11005:
Structure of human cGAS bound to the nucleosome (focused refinement of cGAS-NCP subcomplex)
Method: single particle / : Pathare GR, Cavadini S, Kempf G, Thoma NH

EMDB-11006:
Structure of human cGAS bound to the nucleosome
Method: single particle / : Pathare GR, Cavadini S, Kempf G, Thoma NH

Pages:

+
About EMN search

-
News

-
Aug 12, 2020. New: Covid-19 info

New: Covid-19 info

  • New page: Covid-19 featured information page in EM Navigator

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

-
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. New: Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

  • Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.
    PageDataFormat
    EMN Searchsearch resultCSV, TSV, or JSON
    EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force. (see PDBe EMDB page)
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is "EMD"? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB at PDBe / Contact to PDBj

+
Feb 20, 2018. PDBj/BINDS workshop in Osaka University

PDBj/BINDS workshop in Osaka University

    Read more

    -
    EMN Search

    3DEM data search

    • Advanced data search for EMDB and EM data in PDB widh various search and display options

    Related info.:EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

    Read more