[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database
Q: What is the data source of EM Navigator?
Latest entriesEMDB:
PDB:
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Displayentries / page
Entry
Article
Sample
Experiment
Processing

Yorodumi Search

-
Search result

Showing 1 - 50 of 6,481 items (all data)

EMDB-3579:
30S ribosomal subunit with partial density for ribosomal protein S1
Method: single particle / : Kohler R, Mooney RA, Mills DJ, Landick R, Cramer P

EMDB-3580:
E. coli expressome
Method: single particle / : Kohler R, Mooney RA

EMDB-4070:
Structure-function insights reveal the human ribosome as a cancer target for antibiotics
Method: single particle / : Myasnikov AG, Natchiar SK

EMDB-8474:
Cryo-EM structure of the human CTP synthase filament
Method: helical / : Lynch EM, Kollman JM

EMDB-8475:
Cryo-EM structure of the E. coli CTP synthase tetramer
Method: single particle / : Lynch EM, Hicks DR

EMDB-8476:
human CTP synthase 1 - mutant H355A
Method: single particle / : Lynch EM, Kollman JM

EMDB-8490:
E. coli CTP synthase CC mutant filament
Method: helical / : Lynch E, Kollman J

EMDB-8491:
E. coli CTP synthase CC mutant filament
Method: helical / : Lynch E, Kollman J

EMDB-8504:
CryoEM structure of the CTP synthase filament at 4.6 Angstrom resolution
Method: helical / : Kollman JM, Lynch EM

EMDB-8513:
E. coli CTP synthase CC mutant filament (product-bound)
Method: helical / : Kollman JM, Lynch EM

EMDB-8558:
Negative stain reconstruction of Cas1-Cas2/3 complex of type I-F CRISPR system from Pseudomonas aeruginosa (PA14)
Method: single particle / : Chowdhury S, Lander GC, Rollins MF, Carter J, Golden MS, Wilkinson RA, Bondy-Denomy J, Wiedenheft B

EMDB-8624:
Cryo EM structure of anti-CRISPRs, AcrF1 and AcrF2, bound to type I-F crRNA-guided CRISPR surveillance complex
Method: single particle / : Chowdhury S, Carter J

EMDB-8630:
Ebola GP spike in situ in viral membrane
Method: single particle / : Booth TF, Beniac DR

EMDB-8640:
Asymmetric structure of AcrAB-TolC tripartite multi drug efflux pump
Method: single particle / : Wang Z, Fan G

EMDB-8658:
VCP like ATPase from T. acidophilum (VAT) - conformation 1
Method: single particle / : Ripstein ZA, Huang R

EMDB-8659:
VCP like ATPase from T. acidophilum (VAT)-Substrate bound conformation
Method: single particle / : Ripstein ZA, Huang R

PDB-5lks:
Structure-function insights reveal the human ribosome as a cancer target for antibiotics
Method: single particle / : Myasnikov AG, Natchiar SK, Nebout M, Hazemann I, Imbert V, Khatter H, Peyron JF, Klaholz BP

PDB-5my1:
E. coli expressome
Method: single particle / : Kohler R, Mooney RA, Mills DJ, Kostrewa D, Landick R, Cramer P

PDB-5ty4:
MicroED structure of a complex between monomeric TGF-b and its receptor, TbRII, at 2.9 A resolution
Method: electron crystallography / : Weiss SC, de la Cruz MJ, Hattne J, Shi D, Reyes FE, Callero G, Gonen T

PDB-5u03:
Cryo-EM structure of the human CTP synthase filament
Method: helical / : Lynch EM, Kollman JM

PDB-5u05:
Cryo-EM structure of the E. coli CTP synthase tetramer
Method: single particle / : Lynch EM, Hicks DR, Kollman JM

PDB-5u3c:
CryoEM structure of the CTP synthase filament at 4.6 Angstrom resolution
Method: helical / : Kollman JM, Lynch EM

PDB-5u6r:
E. coli CTP synthase CC mutant filament (product-bound)
Method: helical / : Kollman JM, Lynch EM

PDB-5uz9:
Cryo EM structure of anti-CRISPRs, AcrF1 and AcrF2, bound to type I-F crRNA-guided CRISPR surveillance complex
Method: single particle / : Chowdhury S, Carter J, Rollins MF, Jackson RN, Hoffmann C, Nosaka L, Bondy-Denomy J, Maxwell KL, Davidson AR, Fischer ER, Lander GC, Wiedenheft B

PDB-5v78:
Asymmetric structure of AcrAB-TolC tripartite multi drug efflux pump
Method: single particle / : Wang Z, Fan G, Hryc CF, Blaza JN, Serysheva II, Schmid MF, Chiu W, Luisi BF, Du D

PDB-5vc7:
VCP like ATPase from T. acidophilum (VAT) - conformation 1
Method: single particle / : Ripstein ZA, Huang R, Augustyniak R, Kay LE, Rubinstein JL

PDB-5vca:
VCP like ATPase from T. acidophilum (VAT)-Substrate bound conformation
Method: single particle / : Ripstein ZA, Huang R, Augustyniak R, Kay LE, Rubinstein JL

EMDB-3452:
native 40S-ABCE1 complex
Method: single particle / : Heuer A, Beckmann R, Tampe R

EMDB-3604:
Structure of the C. crescentus S-layer
Method: subtomogram averaging / : Bharat TA, Hagen WJ

EMDB-3636:
multi-drug efflux; membrane transport; RND superfamily; Drug resistance
Method: single particle / : Wang Z, Fan G

EMDB-6699:
Complex of Snf2-Nucleosome complex with Snf2 bound to position +6 of the nucleosome
Method: single particle / : Li M, Liu X, Xia X, Cheng Z, Li X

EMDB-6700:
Complex of Snf2-Nucleosome complex with Snf2 bound to SHL2 of the nucleosome
Method: single particle / : Li M, Liu X, Xia X, Cheng Z, Li X

EMDB-8621:
The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly
Method: single particle / : Razi A, Guarne A

EMDB-8626:
Structure of the 30S subunit
Method: single particle / : Razi A, Guarne A, Ortega J

EMDB-8627:
Structure of the 30S subunit, subclass I
Method: single particle / : Razi A, Guarne A, Ortega J

EMDB-8628:
Structure of the 30S subunit, subclass II
Method: single particle / : Razi A, Guarne A, Ortega J

EMDB-8636:
multi-drug efflux; membrane transport; RND superfamily; Drug resistance
Method: single particle / : wang Z, fan G

PDB-5n97:
Structure of the C. crescentus S-layer
Method: subtomogram averaging / : Bharat TA, Hagen WJ, Briggs JA, Lowe J

PDB-5ng5:
multi-drug efflux; membrane transport; RND superfamily; Drug resistance
Method: single particle / : Wang Z, Fan G, Hryc CF, Blaza JN, Serysheva II, Schmid MF, Chiu W, Luisi BF, Du D

PDB-5uz4:
The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly
Method: single particle / : Razi A, Guarne A, Ortega J

PDB-5v5s:
multi-drug efflux; membrane transport; RND superfamily; Drug resistance
Method: single particle / : wang Z, fan G, Hryc CF, Blaza JN, Serysheva II, Schmid MF, Chiu W, Luisi BF, Du D

PDB-5x0x:
Complex of Snf2-Nucleosome complex with Snf2 bound to position +6 of the nucleosome
Method: single particle / : Li M, Liu X, Xia X, Chen Z, Li X

PDB-5x0y:
Complex of Snf2-Nucleosome complex with Snf2 bound to SHL2 of the nucleosome
Method: single particle / : Li M, Liu X, Xia X, Chen Z, Li X

EMDB-3594:
RNA polymerase I initially transcribing complex with visible tandem Winged Helix domain
Method: single particle / : Engel C, Gubbey T, Neyer S, Sainsbury S, Oberthuer C, Baejen C, Bernecky C, Cramer P

EMDB-3595:
Retinoschisin R141H Mutant
Method: single particle / : Ramsay EP, Collins RF, Owens TW, Siebert CA, Jones RPO, Roseman A, Wang T, Baldock C

EMDB-3596:
The structure of the ESX-5 mycobacterial type VII secretion system membrane complex
Method: single particle / : Ciccarelli L, Marlovits TC

EMDB-3603:
KaiCB circadian clock backbone model based on a Cryo-EM density
Method: single particle / : Schuller JM, Snijder J, Loessl P, Heck AJR, Foerster F

EMDB-3642:
Full-length complex of CMG helicase with polymerase epsilon
Method: single particle / : Zhou JC, Janska A, Goswami P, Renault L, Abid Ali F, Kotecha A, Diffley JFX, Costa A

EMDB-3643:
Complex of CMG helicase with polymerase epsilon lacking the catalytic domain of Pol2
Method: single particle / : Zhou JC, Janska A, Goswami P, Renault L, Abid Ali F, Kotecha A, Diffley JFX, Costa A

EMDB-3644:
Full-length CMG helicase complex
Method: single particle / : Zhou JC, Janska A, Goswami P, Renault L, Abid Ali F, Kotecha A, Diffley JFX, Costa A

Pages:

+
About EMN search

-
News

-
Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

-
Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Apr 13, 2016. Omokage search got faster

Omokage search got faster

  • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
  • Enjoy "shape similarity" of biomolecules, more!

Related info.: Omokage search

+
Mar 3, 2016. Presentation (PDF format) at IPR seminar on Feb 19.

+
Dec 4, 2015. The article about Omokage search is published online

The article about Omokage search is published online

Related info.: Omokage search / gmfit

Read more

-
EMN Search

3DEM data search

  • Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

Read more