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Showing 1 - 50 of 10,304 items (all data)

EMDB-0014:
Two protofilament beta-2-microglobulin amyloid fibril
Method: helical / : Iadanza MG, Ranson NA

EMDB-0243:
Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit
Method: single particle / : Eyal Z, Cimicata G, Matzov D, Fox T, de Val N, Zimmerman E, Bashan A, Yonath A

EMDB-0256:
Natural tetrameric form of human butyrylcholinesterase (BChE)
Method: single particle / : Baymukhametov TN, Chesnokov YM, Boyko KM, Hons M, Lipkin AV, Lushchekina SV, Konarev PV, Masson P, Vasiliev AL, Popov VO, Kovalchuk MV

EMDB-6842:
Structure of RIP2 CARD domain
Method: helical / : Wu B, Gong Q

EMDB-6967:
Anti-HIV-1 AIIMS-P01 Fab in complexed with BG505.SOSIP.664.C2 T332N gp140 trimer
Method: single particle / : Luthra K, Kumar S, Dutta S, Lodha R

EMDB-9029:
Hemagglutinin trimeric ectodomain (B/Massachusetts/02/2012) in complex with Fab from IgG CR9114 and single-domain antibody SD84
Method: single particle / : Pallesen J, Nieusma T, Hoffman RMB, Ward AB

EMDB-9112:
Cryo-EM map of mechanically activated ion channel OSCA1.2 in nanodisc
Method: single particle / : Jojoa-Cruz S, Saotome K, Patapoutian A, Ward AB

EMDB-9113:
Cryo-EM map of mechanically activated ion channel OSCA1.2 in LMNG
Method: single particle / : Jojoa-Cruz S, Saotome K, Patapoutian A, Ward AB

EMDB-9135:
Cryo-EM structure of Human Parainfluenza Virus Type 3 (hPIV3) in complex with antibody PIA174
Method: single particle / : Acharya P, Stewart-Jones G, Carragher B, Potter CS, Kwong PD

EMDB-9215:
Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome
Method: single particle / : Mao YD

EMDB-9223:
Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome
Method: single particle / : Mao YD

EMDB-9224:
Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome
Method: single particle / : Mao YD

EMDB-9225:
Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome
Method: single particle / : Mao YD

EMDB-9226:
Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome
Method: single particle / : Mao YD

EMDB-9227:
Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome
Method: single particle / : Mao YD

EMDB-9228:
Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome
Method: single particle / : Mao YD

EMDB-9229:
Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome
Method: single particle / : Mao YD

EMDB-9234:
Rabbit 80S ribosome with a P-site tRNA (unrotated state)
Method: single particle / : Brown A, Baird MR, Yip MCJ, Murray J, Shao S

EMDB-9235:
Rabbit 80S ribosome with a P- and E-site tRNA
Method: single particle / : Brown A, Baird MR, Yip MCJ, Murray J, Shao S

EMDB-9236:
Rabbit 80S ribosome with a Z-site tRNA (unrotated state)
Method: single particle / : Brown A, Baird MR, Yip MCJ, Murray J, Shao S

EMDB-9241:
Rabbit 80S ribosome with A/P and P/E tRNAs (rotated state)
Method: single particle / : Brown A, Baird MR, Yip MCJ, Murray J, Shao S

EMDB-9294:
Germline VRC01 antibody recognition of a modified clade C HIV-1 envelope trimer, 3 Fabs bound, sharpened map
Method: single particle / : Borst AJ, Weidle CE, Gray MD, Frenz B, Snijder J, Joyce MG, Georgiev IS, Stewart-Jones GBE, Kwong PD, McGuire AT, DiMaio F, Stamatatos L, Pancera M, Veesler D

EMDB-9295:
Germline VRC01 antibody recognition of a modified clade C HIV-1 envelope trimer, 3 Fabs bound, unsharpened map
Method: single particle / : Borst AJ, Weidle CE

EMDB-9303:
Germline VRC01 antibody recognition of a modified clade C HIV-1 envelope trimer, 2 Fabs bound, sharpened map
Method: single particle / : Borst AJ, Weidle CE, Gray MD, Frenz B, Snijder J, Joyce MG, Georgiev IS, Stewart-Jones GBE, Kwong PD, McGuire AT, DiMaio F, Stamatatos L, Pancera M, Veesler D

EMDB-9304:
Germline VRC01 antibody recognition of a modified clade C HIV-1 envelope trimer, 2 Fabs bound, unsharpened map
Method: single particle / : Borst AJ, Weidle CE

EMDB-9610:
Respiratory Complex CIII2CIV2SOD2 from Mycobacterium smegmatis
Method: single particle / : Xu A, Gong HR, Ji WX, Gao RG, Wang SH, Li J, Wang Q, Rao ZH

EMDB-9621:
The Cryo-EM Structure of the Precusor of Human Pre-catalytic Spliceosome (pre-B complex)
Method: single particle / : Zhan X, Yan C, Zhang X, Shi Y

EMDB-9624:
The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolution
Method: single particle / : Zhan X, Yan C, Zhang X, Shi Y

EMDB-9665:
The cryoEM map of HPV33 VLP in complex with the Fab fragment of antibody 4E5
Method: single particle / : Li ZH, Song S, He MZ, Gu Y, Li SW

EMDB-9666:
The cryoEM map of HPV58/33 chimeric VLP in complex with the Fab fragment of antibody 4E5
Method: single particle / : Li ZH, Song S, He MZ, Gu Y, Li SW

EMDB-9667:
The cryoEM map of HPV58/33/52 chimeric VLP in complex with the Fab fragment of antibody 4E5
Method: icosahedral / : Li ZH, Song S, He MZ, Gu Y, Li SW

PDB-5yrn:
Structure of RIP2 CARD domain
Method: helical / : Wu B, Gong Q

PDB-6adq:
Respiratory Complex CIII2CIV2SOD2 from Mycobacterium smegmatis
Method: single particle / : Gong HR, Xu A, Gao RG, Ji WX, Wang SH, Wang Q, Li J, Rao ZH

PDB-6ah0:
The Cryo-EM Structure of the Precusor of Human Pre-catalytic Spliceosome (pre-B complex)
Method: single particle / : Zhan X, Yan C, Zhang X, Shi Y

PDB-6ahd:
The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolution
Method: single particle / : Zhan X, Yan C, Zhang X, Shi Y

PDB-6gk3:
Two protofilament beta-2-microglobulin amyloid fibril
Method: helical / : Iadanza MG, Ranson NA

PDB-6hma:
Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit
Method: single particle / : Eyal Z, Cimicata G, Matzov D, Fox T, de Val N, Zimmerman E, Bashan A, Yonath A

PDB-6hzm:
Cryo-EM structure of the ABCG2 E211Q mutant bound to ATP and Magnesium (alternative placement of Magnesium into the cryo-EM density)
Method: single particle / : Manolaridis I, Jackson SM, Taylor NMI, Kowal J, Stahlberg H, Locher KP

PDB-6mgv:
Structure of mechanically activated ion channel OSCA1.2 in nanodisc
Method: single particle / : Jojoa-Cruz S, Saotome K, Patapoutian A, Ward AB

PDB-6mgw:
Structure of mechanically activated ion channel OSCA1.2 in LMNG
Method: single particle / : Jojoa-Cruz S, Saotome K, Patapoutian A, Ward AB

PDB-6mjz:
Cryo-EM structure of Human Parainfluenza Virus Type 3 (hPIV3) in complex with antibody PIA174
Method: single particle / : Acharya P, Stewart-Jones G, Carragher B, Potter CS, Kwong PD

PDB-6myy:
Germline VRC01 antibody recognition of a modified clade C HIV-1 envelope trimer, 3 Fabs bound, sharpened map
Method: single particle / : Borst AJ, Weidle CE, Gray MD, Frenz B, Snijder J, Joyce MG, Georgiev IS, Stewart-Jones GBE, Kwong PD, McGuire AT, DiMaio F, Stamatatos L, Pancera M, Veesler D

PDB-6mzj:
Germline VRC01 antibody recognition of a modified clade C HIV-1 envelope trimer, 2 Fabs bound, sharpened map
Method: single particle / : Borst AJ, Weidle CE, Gray MD, Frenz B, Snijder J, Joyce MG, Georgiev IS, Stewart-Jones GBE, Kwong PD, McGuire AT, DiMaio F, Stamatatos L, Pancera M, Veesler D

EMDB-0130:
Structure of the Macrobrachium rosenbergii Nodavirus
Method: icosahedral / : Ho KH, Gabrielsen M

EMDB-0133:
Structural snapshots of the Type 9 protein translocon
Method: single particle / : Deme JC, Lea SM

EMDB-0134:
Structural snapshots of the Type 9 protein translocon Plug-complex
Method: single particle / : Deme JC, Lea SM

EMDB-0190:
Cryo-EM structure of the ABCG2 E211Q mutant bound to ATP and Magnesium
Method: single particle / : Manolaridis I, Jackson SM, Taylor NMI, Kowal J, Stahlberg H, Locher KP

EMDB-0196:
Cryo-EM structure of the ABCG2 E211Q mutant bound to estrone 3-sulfate and 5D3-Fab
Method: single particle / : Manolaridis I, Jackson SM, Taylor NMI, Kowal J, Stahlberg H, Locher KP

EMDB-0225:
Mouse serotonin 5-HT3 receptor, serotonin-bound, F conformation
Method: single particle / : Polovinkin L, Neumann E, Schoehn G, Nury H

EMDB-0226:
Mouse serotonin 5-HT3 receptor, serotonin-bound, I1 conformation
Method: single particle / : Polovinkin L, Neumann E, Schoehn G, Nury H

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Feb 20, 2018. PDBj/BINDS workshop in Osaka University

PDBj/BINDS workshop in Osaka University

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    Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

    Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

    • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
    • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
    • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

    External links: The 2017 Nobel Prize in Chemistry - Press Release

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    Jul 12, 2017. Major update of PDB

    Major update of PDB

    • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
    • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

    External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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    Omokage search with filter

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