[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 73,978 items (all data)

EMDB-61530:
putative MgE1 of human TMEM94
Method: single particle / : Gong DS

EMDB-61533:
putative MgE1-ATP of human TMEM94
Method: single particle / : Gong DS

EMDB-61534:
putative MgE1P-ADP of human TMEM94
Method: single particle / : Gong DS

EMDB-61542:
putative MgE2P of TMEM94
Method: single particle / : Gong DS

EMDB-61543:
putative E2P of TMEM94
Method: single particle / : Gong DS

EMDB-61544:
putative MgE1-ATP-H of TMEM94
Method: single particle / : Gong DS

PDB-9jjk:
putative MgE1 of human TMEM94
Method: single particle / : Gong DS

PDB-9jjn:
putative MgE1-ATP of human TMEM94
Method: single particle / : Gong DS

PDB-9jjo:
putative MgE1P-ADP of human TMEM94
Method: single particle / : Gong DS

PDB-9jk3:
putative MgE2P of TMEM94
Method: single particle / : Gong DS

PDB-9jk4:
putative E2P of TMEM94
Method: single particle / : Gong DS

PDB-9jk5:
putative MgE1-ATP-H of TMEM94
Method: single particle / : Gong DS

EMDB-53305:
Cryo-EM Structure of catalytic amyloids
Method: helical / : Zalk R, Kunnath SM, Arad E, Jelinek R

PDB-9r7e:
Cryo-EM Structure of catalytic amyloids
Method: helical / : Shahar A, Zalk R, Arad E

EMDB-62213:
Cryo-EM structure of glycopeptide fibril
Method: helical / : Xia WC, Liu C

PDB-9kap:
Cryo-EM structure of glycopeptide fibril
Method: helical / : Xia WC, Liu C

EMDB-60592:
RNA polymerase II elongation complex stalled at SHL(-5) of the nucleosome containing histone variant H2A.B
Method: single particle / : Akatsu M, Kujirai T, Hirano R, Ehara H, Takizawa Y, Sekine S, Kurumizaka H

EMDB-60593:
RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome containing histone variant H2A.B
Method: single particle / : Akatsu M, Kujirai T, Rina H, Ehara H, Takizawa Y, Sekine S, Kurumizaka H

PDB-9ii7:
RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome containing histone variant H2A.B
Method: single particle / : Akatsu M, Kujirai T, Rina H, Ehara H, Takizawa Y, Sekine S, Kurumizaka H

EMDB-49060:
2.37 A S.cerevisiae Chd1[L886G/L889G/L891G]-nucleosome reconstructruction. Combined 1:1 and 2:1 complexes
Method: single particle / : Nodelman IM, Folkwein HJ, Armache JP, Bowman GD

EMDB-49061:
2.54 A S.cerevisiae Chd1[L886G/L889G/L891G]-nucleosome 1:1 complex
Method: single particle / : Nodelman IM, Folkwein HJ, Armache JP, Bowman GD

EMDB-49062:
2.61 A S.cerevisiae Chd1[L886G/L889G/L891G]-nucleosome 2:1 complex
Method: single particle / : Nodelman IM, Folkwein HJ, Armache JP, Bowman GD

EMDB-49063:
2.88 A S.cerevisiae Chd1[L886G/L889G/L891G]-nucleosome 2:1 complex with DNA-binding domain
Method: single particle / : Nodelman IM, Folkwein HJ, Armache JP, Bowman GD

EMDB-49064:
2.90 A S.cerevisiae Chd1[L886G/L889G/L891G]-nucleosome 2:1 complex with C-terminal activator helix around residue 945
Method: single particle / : Nodelman IM, Folkwein HJ, Armache JP, Bowman GD

PDB-9n6h:
2.54 A S.cerevisiae Chd1[L886G/L889G/L891G]-nucleosome 1:1 complex
Method: single particle / : Nodelman IM, Folkwein HJ, Armache JP, Bowman GD

PDB-9n6i:
2.61 A S.cerevisiae Chd1[L886G/L889G/L891G]-nucleosome 2:1 complex
Method: single particle / : Nodelman IM, Folkwein HJ, Armache JP, Bowman GD

PDB-9n6k:
2.88 A S.cerevisiae Chd1[L886G/L889G/L891G]-nucleosome 2:1 complex with DNA-binding domain
Method: single particle / : Nodelman IM, Folkwein HJ, Armache JP, Bowman GD

EMDB-51807:
AcMNPV apical cap - C2 plug focused map 2
Method: single particle / : Effantin G, Kandiah E, Pelosse M

EMDB-51662:
Subtomogram average of fascin-actin complex
Method: subtomogram averaging / : Song X, Corbalan-Garcia S, Huiskonen JT

EMDB-51663:
Subtomogram average of three fascins in complex with two actin filaments
Method: subtomogram averaging / : Song X, Corbalan-Garcia S, Huiskonen JT

EMDB-52503:
Cryo-tomogram of fascin-actin bundles reconstituted in vitro
Method: electron tomography / : Song X, Corbalan-Garcia S, Huiskonen JT

PDB-9gxi:
Subtomogram average of fascin-actin complex
Method: subtomogram averaging / : Song X, Corbalan-Garcia S, Huiskonen JT

EMDB-61947:
Cryo-EM structure of UTP-bound P2Y purinoceptor 4-miniGq-Nb35 complex
Method: single particle / : Lan B, Zhang S, Liu X, Lin B

EMDB-61958:
Cryo-EM structure of ATP-bound P2Y purinoceptor 2-miniGq-Nb35 complex
Method: single particle / : Lan B, Zhang S, Liu X, Lin B

EMDB-61986:
Cryo-EM structure of ATP-bound P2Y purinoceptor 2-miniGo-scFv16 complex
Method: single particle / : Lan B, Zhang S, Liu X, Lin B

EMDB-61990:
Cryo-EM structure of apo-P2Y purinoceptor 2-miniGq-Nb35 complex
Method: single particle / : Lan B, Zhang S, Liu X, Lin B

PDB-9k0k:
Cryo-EM structure of UTP-bound P2Y purinoceptor 4-miniGq-Nb35 complex
Method: single particle / : Lan B, Zhang S, Liu X, Lin B

PDB-9k0x:
Cryo-EM structure of ATP-bound P2Y purinoceptor 2-miniGq-Nb35 complex
Method: single particle / : Lan B, Zhang S, Liu X, Lin B

PDB-9k20:
Cryo-EM structure of ATP-bound P2Y purinoceptor 2-miniGo-scFv16 complex
Method: single particle / : Lan B, Zhang S, Liu X, Lin B

PDB-9k25:
Cryo-EM structure of apo-P2Y purinoceptor 2-miniGq-Nb35 complex
Method: single particle / : Lan B, Zhang S, Liu X, Lin B

EMDB-49635:
SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosomal subunit (local refinement of the 40S body)
Method: single particle / : Gen R, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-49636:
SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
Method: single particle / : Gen R, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-49637:
SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (consensus map)
Method: single particle / : Gen R, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9npx:
SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosomal subunit (local refinement of the 40S body)
Method: single particle / : Gen R, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9npy:
SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
Method: single particle / : Gen R, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-70549:
Cryo-landed and laser rehydrated beta-galactosidase
Method: single particle / : Mertz KL, Jordahl D, Hemme CA, Probasco MD, Forbes DS, Ducos PL, Salome AZ, Quarmby ST, Grant T, Coon JJ

EMDB-70551:
Outside of laser spot cryo-landed beta galactosidase
Method: single particle / : Mertz KL, Jordahl D, Hemme CA, Probasco MD, Forbes DS, Ducos PL, Salome AZ, Quarmby ST, Grant T, Coon JJ

EMDB-70552:
Plunge frozen control Beta Galactosidase
Method: single particle / : Mertz KL, Jordahl D, Hemme CA, Probasco MD, Forbes DS, Ducos PL, Salome AZ, Quarmby ST, Grant T, Coon JJ

EMDB-46686:
Structure of human UBR4-KCMF1-CaM E3 ligase complex (Silencing Factor of the Integrated stress response, SiFI)
Method: single particle / : Yang Z, Rape M

EMDB-46688:
Cryo-EM map of the human UBR4-KCMF1-CaM E3 Ligase complex (Silencing Factor of the Integrated stress response, SiFI) N-terminal region
Method: single particle / : Yang Z, Haakonsen DL, Rape M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more