[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 576 items for (author: yang & kr)

EMDB-71685:
Cryo-EM structure of human NXPE1
Method: single particle / : Zhang H, Li F, Piper D, Min X

EMDB-72207:
Cryo EM structure of elk ACE2 in complex with SARS-CoV-2 spike trimer
Method: single particle / : Ye K, Tao YJ, Wan XF

EMDB-72208:
Cryo EM structure of elk ACE2 in complex with XBB 1.5 spike RBD
Method: single particle / : Ye K, Tao YJ, Wan XF

PDB-9q3u:
Cryo EM structure of elk ACE2 in complex with SARS-CoV-2 spike trimer
Method: single particle / : Ye K, Tao YJ, Wan XF

PDB-9q3v:
Cryo EM structure of elk ACE2 in complex with XBB 1.5 spike RBD
Method: single particle / : Ye K, Tao YJ, Wan XF

EMDB-73406:
Negative stained A. vinelandii NifEN-B' fusion
Method: single particle / : Neumann B, Brandon K, Hu Y, Ribbe MW, Gonen S

EMDB-73407:
Negative stained A. vinelandii NifEN/NifH ADPxAIF4- stabilized complex
Method: single particle / : Neumann B, Brandon K, Hu Y, Ribbe MW, Gonen S

EMDB-39009:
positive allosteric modulator(BMS986187)-bound delta-opioid receptor-Gi complex
Method: single particle / : Luo P, Xu Y, Wang Y, Zhuang Y, Xu HE

PDB-8y71:
positive allosteric modulator(BMS986187)-bound delta-opioid receptor-Gi complex
Method: single particle / : Luo P, Xu Y, Wang Y, Zhuang Y, Xu HE

EMDB-62849:
Gi-bound kappa opioid receptor in complex with dynorphin and positive allosteric modulator MPAM-15
Method: single particle / : Zhuang Y, Wang Y, Xu Y, Luo P, Xu HE

PDB-9l60:
Gi-bound kappa opioid receptor in complex with dynorphin and positive allosteric modulator MPAM-15
Method: single particle / : Zhuang Y, Wang Y, Xu Y, Luo P, Xu HE

EMDB-72754:
Local refinement of HSV UL5 in HSV replication fork complex
Method: single particle / : Yu Z, Abraham J

EMDB-72755:
Local refinement of HSV UL30 in HSV replication fork complex
Method: single particle / : Yu Z, Abraham J

EMDB-72757:
Low resolution map of HSV replication fork complex
Method: single particle / : Yu Z, Abraham J

EMDB-72758:
Local refinement of interface of HSV UL5 and UL30 in the replication fork
Method: single particle / : Yu Z, Abraham J

EMDB-72764:
HSV replication fork complex bound to pritelivir
Method: single particle / : Yu Z, Abraham J

EMDB-72780:
Local refinement of HSV UL5 in IM-250 bound H/P complex
Method: single particle / : Yu Z, Abarham J

EMDB-72781:
HSV Helicase-primase complex bound to IM-250
Method: single particle / : Yu Z, Abarham J

EMDB-72784:
Local refinment of HSV UL5 in pritelivir-bound H/P complex
Method: single particle / : Yu Z, Abraham J

EMDB-72785:
Local refinement of HSV UL8 in pritelivir-bound H/P complex
Method: single particle / : Yu Z, Abraham J

EMDB-72786:
HSV helicase-primase complex bound to pritelivir
Method: single particle / : Yu Z, Abraham J

EMDB-72787:
Local refinement of HSV UL5 in amenamevir-bound H/P complex
Method: single particle / : Yu Z, Abraham J

EMDB-72788:
Local refinement of HSV UL8 in amenamevir-bound H/P complex
Method: single particle / : Yu Z, Abraham J

EMDB-72789:
HSV Helicase-primase complex bound to amenamevir
Method: single particle / : Yu Z, Abraham J

PDB-9yc9:
HSV replication fork complex bound to pritelivir
Method: single particle / : Yu Z, Abraham J

PDB-9ycp:
HSV Helicase-primase complex bound to IM-250
Method: single particle / : Yu Z, Abarham J

PDB-9yct:
HSV helicase-primase complex bound to pritelivir
Method: single particle / : Yu Z, Abraham J

PDB-9ycv:
HSV Helicase-primase complex bound to amenamevir
Method: single particle / : Yu Z, Abraham J

EMDB-71766:
Cryo-EM structure of J601-1B2 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD

EMDB-71767:
Cryo-EM structure of J601-A6 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71772:
Cryo-EM structure of K001-A1 Fab in complex with HIV-1 459C-OPT RnS DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71781:
Cryo-EM structure of HIV-1 459C-WT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71782:
Cryo-EM structure of HIV-1 459C-ALT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pni:
Cryo-EM structure of J601-1B2 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD

PDB-9pnn:
Cryo-EM structure of J601-A6 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pnu:
Cryo-EM structure of K001-A1 Fab in complex with HIV-1 459C-OPT RnS DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pq2:
Cryo-EM structure of HIV-1 459C-WT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pq3:
Cryo-EM structure of HIV-1 459C-ALT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-48737:
Cryo-EM structure of Natrinema sp. J7-2 Type IV pilus, PilA1
Method: helical / : Sonani RR, Egelman EH

PDB-9myg:
Cryo-EM structure of Natrinema sp. J7-2 Type IV pilus, PilA1
Method: helical / : Sonani RR, Egelman EH

EMDB-47522:
Cryo-EM structure of human LPHN2 (ADGRL2)/G13 complex in lipid nanodiscs
Method: single particle / : He F, Skiniotis G

PDB-9e51:
Cryo-EM structure of human LPHN2 (ADGRL2)/G13 complex in lipid nanodiscs
Method: single particle / : He F, Skiniotis G

EMDB-70018:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 0 (unbound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70019:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 1 (1 Fab bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70020:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 2 (2 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70021:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 3 (3 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70022:
BG505 SOSIP in complex with 007 bNAb IgG1 - trimer-dimer class
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2q:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 0 (unbound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2r:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 1 (1 Fab bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2s:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 2 (2 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more