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TitleCryo-EM structure of the brine shrimp mitochondrial ATP synthase suggests an inactivation mechanism for the ATP synthase leak channel.
Journal, issue, pagesCell Death Differ, Year 2025
Publish dateMar 19, 2025
AuthorsAmrendra Kumar / Juliana da Fonseca Rezende E Mello / Yangyu Wu / Daniel Morris / Ikram Mezghani / Erin Smith / Stephane Rombauts / Peter Bossier / Juno Krahn / Fred J Sigworth / Nelli Mnatsakanyan /
PubMed AbstractMammalian mitochondria undergo Ca-induced and cyclosporinA (CsA)-regulated permeability transition (mPT) by activating the mitochondrial permeability transition pore (mPTP) situated in mitochondrial ...Mammalian mitochondria undergo Ca-induced and cyclosporinA (CsA)-regulated permeability transition (mPT) by activating the mitochondrial permeability transition pore (mPTP) situated in mitochondrial inner membranes. Ca-induced prolonged openings of mPTP under certain pathological conditions result in mitochondrial swelling and rupture of the outer membrane, leading to mitochondrial dysfunction and cell death. While the exact molecular composition and structure of mPTP remain unknown, mammalian ATP synthase was reported to form voltage and Ca-activated leak channels involved in mPT. Unlike in mammals, mitochondria of the crustacean Artemia franciscana have the ability to accumulate large amounts of Ca without undergoing the mPT. Here, we performed structural and functional analysis of A. franciscana ATP synthase to study the molecular mechanism of mPTP inhibition in this organism. We found that the channel formed by the A. franciscana ATP synthase dwells predominantly in its inactive state and is insensitive to Ca, in contrast to porcine heart ATP synthase. Single-particle cryo-electron microscopy (cryo-EM) analysis revealed distinct structural features in A. franciscana ATP synthase compared with mammals. The stronger density of the e-subunit C-terminal region and its enhanced interaction with the c-ring were found in A. franciscana ATP synthase. These data suggest an inactivation mechanism of the ATP synthase leak channel and its possible contribution to the lack of mPT in this organism.
External linksCell Death Differ / PubMed:40108410
MethodsEM (single particle)
Resolution2.5 - 4.0 Å
Structure data

EMDB-43079: Artemia franciscana ATP synthase state 3a, pH 8
Method: EM (single particle) / Resolution: 2.76 Å

EMDB-44061, PDB-9b0x:
Artemia franciscana ATP synthase state 2 (composite structure), pH 7.0
Method: EM (single particle) / Resolution: 2.6 Å

EMDB-44087: Artemia franciscana ATP synthase state 1, pH 7.0
Method: EM (single particle) / Resolution: 2.6 Å

EMDB-44094: Artemia franciscana ATP synthase state 3a, pH 7.0
Method: EM (single particle) / Resolution: 2.7 Å

EMDB-44096: Artemia franciscana ATP synthase F1 domain, state 3a, pH 7.0
Method: EM (single particle) / Resolution: 2.5 Å

EMDB-44142, PDB-9b3j:
Artemia franciscana ATP synthase state 2 (composite structure), pH 8.0
Method: EM (single particle) / Resolution: 2.73 Å

EMDB-44162: Artemia franciscana ATP synthase FO domain, state 2, pH 7.0
Method: EM (single particle) / Resolution: 3.9 Å

EMDB-44165: Artemia franciscana ATP synthase F1 domain, state 2, pH 7.0
Method: EM (single particle) / Resolution: 2.6 Å

EMDB-44169: Artemia franciscana ATP synthase FO domain, state 2, pH 8.0
Method: EM (single particle) / Resolution: 3.4 Å

EMDB-44170: Artemia franciscana ATP synthase F1 domain, state 2, pH 8.0
Method: EM (single particle) / Resolution: 2.6 Å

EMDB-44172: Artemia franciscana ATP synthase peripheral stalk, state 2, pH 8.0
Method: EM (single particle) / Resolution: 4.0 Å

EMDB-44173: Artemia franciscana ATP synthase, state 1, pH 8.0
Method: EM (single particle) / Resolution: 2.8 Å

EMDB-44177: Artemia franciscana ATP synthase, state 2, FOF1 with weak density of the peripheral stalk, pH 8.0
Method: EM (single particle) / Resolution: 3.6 Å

EMDB-44776, PDB-9bpg:
Artemia franciscana ATP synthase FO domain, state 1, pH 7.0
Method: EM (single particle) / Resolution: 3.3 Å

EMDB-49579: Artemia franciscana ATP synthase, state 2, pH 8.0, consensus map
Method: EM (single particle) / Resolution: 2.7 Å

EMDB-49580: Artemia franciscana ATP synthase, state 2, pH 7.0, consensus map
Method: EM (single particle) / Resolution: 2.6 Å

Chemicals

ChemComp-ATP:
ADENOSINE-5'-TRIPHOSPHATE / ATP, energy-carrying molecule*YM

ChemComp-MG:
Unknown entry

ChemComp-ADP:
ADENOSINE-5'-DIPHOSPHATE / ADP, energy-carrying molecule*YM

ChemComp-CDL:
CARDIOLIPIN / phospholipid*YM

Source
  • artemia franciscana (crustacean)
KeywordsMEMBRANE PROTEIN / ATP synthesis / Complex V / mitochondria / oxidative-phosphorylation

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