[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 921 items for (author: su & my)

EMDB-72655:
Gb1g2 crosslinked to PLCb3
Method: single particle / : Fisher IJ, Lyon AM

EMDB-72732:
Gbg crosslinked to PLCb3 - second conformation
Method: single particle / : Fisher IJ, Lyon AM

EMDB-72733:
Gbg crosslinked to PLCb3 - second conformation
Method: single particle / : Fisher IJ, Lyon AM

PDB-9y7h:
Gb1g2 crosslinked to PLCb3
Method: single particle / : Fisher IJ, Lyon AM

PDB-9yao:
Gbg crosslinked to PLCb3 - second conformation
Method: single particle / : Fisher IJ, Lyon AM

PDB-9yap:
Gbg crosslinked to PLCb3 - second conformation
Method: single particle / : Fisher IJ, Lyon AM

EMDB-49844:
Structure of Nanchung-Inactive-Calmodulin in apo state
Method: single particle / : Fedor JG, Lee SY

EMDB-49845:
Structure of Nanchung-Inactive-Calmodulin in complex with Nicotinamide
Method: single particle / : Fedor JG, Lee SY

EMDB-49846:
Structure of Nanchung-Inactive-Calmodulin in complex with Nicotinamide, EDTA
Method: single particle / : Fedor JG, Lee SY

EMDB-49847:
Structure of Nanchung-Inactive-Calmodulin in complex with Afidopyropen and calcium
Method: single particle / : Fedor JG, Lee SY

EMDB-49848:
Structure of Nanchung-Inactive-Calmodulin in complex with Afidopyropen, EDTA
Method: single particle / : Fedor JG, Lee SY

EMDB-49849:
Structure of a pentameric Nanchung in complex with Afidopyropen
Method: single particle / : Fedor JG, Lee SY

PDB-9nvn:
Structure of Nanchung-Inactive-Calmodulin in apo state
Method: single particle / : Fedor JG, Lee SY

PDB-9nvo:
Structure of Nanchung-Inactive-Calmodulin in complex with Nicotinamide
Method: single particle / : Fedor JG, Lee SY

PDB-9nvp:
Structure of Nanchung-Inactive-Calmodulin in complex with Nicotinamide, EDTA
Method: single particle / : Fedor JG, Lee SY

PDB-9nvq:
Structure of Nanchung-Inactive-Calmodulin in complex with Afidopyropen and calcium
Method: single particle / : Fedor JG, Lee SY

PDB-9nvr:
Structure of Nanchung-Inactive-Calmodulin in complex with Afidopyropen, EDTA
Method: single particle / : Fedor JG, Lee SY

PDB-9nvs:
Structure of a pentameric Nanchung in complex with Afidopyropen
Method: single particle / : Fedor JG, Lee SY

EMDB-62001:
Cryo-EM structure of the HfmIscB-omega RNA-target DNA complex
Method: single particle / : Nagahata N, Yamada S, Yamashita K, Nishimasu H

EMDB-62002:
Cryo-EM structure of the TbaIscB-omega RNA-target DNA complex
Method: single particle / : Nagahata N, Yamada S, Yamashita K, Nishimasu H

EMDB-62003:
Cryo-EM structure of the YnpsCas9-guide RNA-target DNA complex
Method: single particle / : Nagahata N, Yamada S, Yamashita K, Nishimasu H

EMDB-62004:
Cryo-EM structure of the NbaCas9-guide RNA-target DNA complex
Method: single particle / : Nagahata N, Yamada S, Yamashita K, Nishimasu H

PDB-9k2z:
Cryo-EM structure of the HfmIscB-omega RNA-target DNA complex
Method: single particle / : Nagahata N, Yamada S, Yamashita K, Nishimasu H

PDB-9k30:
Cryo-EM structure of the TbaIscB-omega RNA-target DNA complex
Method: single particle / : Nagahata N, Yamada S, Yamashita K, Nishimasu H

PDB-9k31:
Cryo-EM structure of the YnpsCas9-guide RNA-target DNA complex
Method: single particle / : Nagahata N, Yamada S, Yamashita K, Nishimasu H

PDB-9k32:
Cryo-EM structure of the NbaCas9-guide RNA-target DNA complex
Method: single particle / : Nagahata N, Yamada S, Yamashita K, Nishimasu H

EMDB-71739:
Legionella Dot/Icm T4SS
Method: subtomogram averaging / : Dutka P, Liu Y, Maggi S, Jensen GJ

EMDB-72186:
Focused refinement map of the periplasmic part of the Legionella pneumophila T4SS.
Method: subtomogram averaging / : Dutka P, Liu Y, Maggi S, Jensen GJ

EMDB-72187:
Focused refinement map of the cytoplasmic region of the Legionella pneumophila T4SS.
Method: subtomogram averaging / : Dutka P, Liu Y, Maggi S, Jensen GJ

EMDB-66145:
Cryo-EM structure of the apo-ConsOR5-Gs complex
Method: single particle / : Rong NK, Zhang MH, Yang F, Sun JP

EMDB-63371:
Cryo-EM structure of DDB1-DDA1-DET1 complex
Method: single particle / : Su MY, Wang S, Teng F

EMDB-63372:
Cryo-EM structure of DDB1-DDA1-DET1 complex
Method: single particle / : Su MY, Wang S, Teng F

EMDB-63374:
Cryo-EM structure of DDB1-DDA1-DET1-Ube2e2 complex
Method: single particle / : Su MY, Wang S, Teng F

EMDB-63375:
Cryo-EM structure of dimeric DDB1-DDA1-DET1-Ube2e2-COP1 complex
Method: single particle / : Su MY, Wang S, Teng F

EMDB-63383:
protein structure of DDB1-DDA1-DET1
Method: single particle / : Su MY, Wang S, Teng F

EMDB-63385:
protein structure of DDB1-DDA1-DET1-Ube2e2 complex
Method: single particle / : Su MY, Wang S, Teng F

EMDB-63386:
protein structure of DDB1-DDA1-DET1-Ube2e2 bound to COP1 dimer
Method: single particle / : Su MY, Wang S, Teng F

EMDB-63397:
Local refinement of stacked like DDB1-DDA1-DET1-Ube2e2-COP1 complex (layer 1)
Method: single particle / : Su MY, Wang S, Teng F

EMDB-63565:
Local refinement of stacked like DDB1-DDA1-DET1-Ube2e2-COP1 complex (layer 2)
Method: single particle / : Su MY

EMDB-65758:
DDB1-DDA1-DET1-Ube2e2-COP1-c-Jun-STK40 complex
Method: single particle / : Su MY

EMDB-63174:
Cryo-EM structure of the receptor of PL45-Olfr110-Gs complex
Method: single particle / : Rong NK, Zhang MH, Yang F, Sun JP

EMDB-63175:
Cryo-EM structure of the receptor of PL45-Olfr110-Gs complex
Method: single particle / : Rong NK, Zhang MH, Yang F, Sun JP

EMDB-62719:
Structure of gain-of-function polycystin-1/polycystin-2 complex
Method: single particle / : Chen MY, Su Q

EMDB-62726:
Structure of gain-of-function polycystin-1/polycystin-2 complex
Method: single particle / : Chen MY, Su Q, Shi YG

EMDB-60222:
Structure of Polycystin-1/Polycystin-2 complex with 7b,27-DHC
Method: single particle / : Chen MY, Su Q, Shi YG, Yu Y

EMDB-62427:
Cryo-EM structure of the heterotrimeric interleukin-2 receptor in complex with interleukin-2 and anti-CD25 Fab S417
Method: single particle / : Katsura K, Matsumoto T, Shirouzu M

PDB-9kmc:
Cryo-EM structure of the heterotrimeric interleukin-2 receptor in complex with interleukin-2 and anti-CD25 Fab S417
Method: single particle / : Katsura K, Matsumoto T, Shirouzu M

EMDB-62399:
CryoEM structure of Pleurocybella porrigens lectin (PPL) in complex with GalNAc
Method: single particle / : Ishimoto N, Adachi D, Kawabata H, Park SY, Tame JRH, Kamata K

PDB-9kl3:
CryoEM structure of Pleurocybella porrigens lectin (PPL) in complex with GalNAc
Method: single particle / : Ishimoto N, Adachi D, Kawabata H, Park SY, Tame JRH, Kamata K

EMDB-64665:
Cryo-EM structure of GATOR1-KICSTOR complex
Method: single particle / : Su MY

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more