[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 64 items for (author: lang & ae)

EMDB-14727:
3D reconstruction of the cylindrical assembly of DnaJA2 by imposing D5 symmetry
Method: single particle / : Cuellar J, Velasco-Carneros L, Santiago C, Martin-Benito J, Valpuesta JM, Muga A

EMDB-14729:
3D reconstruction of the cylindrical assembly of DnaJA2 without symmetry imposition
Method: single particle / : Cuellar J, Velasco-Carneros L, Santiago C, Martin-Benito J, Valpuesta JM, Muga A

EMDB-14736:
3D reconstruction of the cylindrical assembly of DnaJA2 delta G/F by imposing D5 symmetry
Method: single particle / : Cuellar J, Velasco-Carneros L, Santiago C, Martin-Benito J, Valpuesta J, Muga A

PDB-7zhs:
3D reconstruction of the cylindrical assembly of DnaJA2 delta G/F by imposing D5 symmetry
Method: single particle / : Cuellar J, Velasco-Carneros L, Santiago C, Martin-Benito J, Valpuesta J, Muga A

EMDB-14706:
3D reconstruction of the cylindrical assembly of DnaJA2 delta G/F without symmetry imposition
Method: single particle / : Cuellar J, Velasco-Carneros L, Santiago C, Martin-Benito J, Muga A, Valpuesta JM

EMDB-27032:
Cryo-EM structure of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC monomeric complex
Method: single particle / : Li Y, Langley C, Azumaya CM, Echeverria I, Chesarino NM, Emerman M, Cheng Y, Gross JD

EMDB-27033:
Cryo-EM structure of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC dimeric complex in State 1
Method: single particle / : Li Y, Langley C, Azumaya CM, Echeverria I, Chesarino NM, Emerman M, Cheng Y, Gross JD

EMDB-27034:
Cryo-EM structure of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC dimeric complex in State 2
Method: single particle / : Li Y, Langley C, Azumaya CM, Echeverria I, Chesarino NM, Emerman M, Cheng Y, Gross JD

EMDB-28667:
Cryo-EM map of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC dimeric complex in State 1-prime
Method: single particle / : Li Y, Langley C, Azumaya CM, Echeverria I, Chesarino NM, Emerman M, Cheng Y, Gross JD

PDB-8cx0:
Cryo-EM structure of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC monomeric complex
Method: single particle / : Li Y, Langley C, Azumaya CM, Echeverria I, Chesarino NM, Emerman M, Cheng Y, Gross JD

PDB-8cx1:
Cryo-EM structure of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC dimeric complex in State 1
Method: single particle / : Li Y, Langley C, Azumaya CM, Echeverria I, Chesarino NM, Emerman M, Cheng Y, Gross JD

PDB-8cx2:
Cryo-EM structure of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC dimeric complex in State 2
Method: single particle / : Li Y, Langley C, Azumaya CM, Echeverria I, Chesarino NM, Emerman M, Cheng Y, Gross JD

EMDB-28195:
SV40 T-Antigen helicase hexamer
Method: single particle / : Yuan Z, Langston L, Georgescu R, Li H, O'Donnell M

EMDB-25448:
Negative-stain EM reconstruction of SpFN_1B-06-PL, a SARS-CoV-2 spike fused to H.pylori ferritin nanoparticle vaccine candidate
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25449:
RFN_131, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Receptor-Binding Domain
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25450:
pCoV146, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Spike Receptor-Binding and N-Terminal Domains
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25451:
pCoV111, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Spike S1 Subunit
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-12335:
Structure of PSII-M
Method: single particle / : Zabret J, Bohn S

EMDB-12336:
Structure of PSII-I (PSII with Psb27, Psb28, and Psb34)
Method: single particle / : Zabret J, Bohn S

EMDB-12337:
Structure of PSII-I prime (PSII with Psb28, and Psb34)
Method: single particle / : Zabret J, Bohn S

PDB-7nho:
Structure of PSII-M
Method: single particle / : Zabret J, Bohn S, Schuller SK, Arnolds O, Chan A, Tajkhorshid E, Stoll R, Engel BD, Rudack T, Schuller JM, Nowaczyk MM

PDB-7nhp:
Structure of PSII-I (PSII with Psb27, Psb28, and Psb34)
Method: single particle / : Zabret J, Bohn S, Schuller SK, Arnolds O, Chan A, Tajkhorshid E, Stoll R, Engel BD, Rudack T, Schuller JM, Nowaczyk MM

PDB-7nhq:
Structure of PSII-I prime (PSII with Psb28, and Psb34)
Method: single particle / : Zabret J, Bohn S, Schuller SK, Arnolds O, Chan A, Tajkhorshid E, Stoll R, Engel BD, Rudack T, Schuller JM, Nowaczyk MM

EMDB-21705:
PL-bound rat TRPV2 in nanodiscs
Method: single particle / : Pumroy RP, Moiseenkova-Bell VY

PDB-6wkn:
PL-bound rat TRPV2 in nanodiscs
Method: single particle / : Pumroy RP, Moiseenkova-Bell VY

EMDB-22881:
Cryo-EM structure of enteropathogenic Escherichia colitype III secretion system EspA filament
Method: helical / : Zheng W, Ilangovan A, Costa TRD

PDB-7khw:
Cryo-EM structure of enteropathogenic Escherichia coli type III secretion system EspA filament
Method: helical / : Zheng W, Ilangovan A, Costa TRD, Egelman EH

EMDB-10792:
Hybrid structure of the SPP1 tail tube by solid-state NMR and cryo EM - Final EM Refinement
Method: helical / : Zinke M, Sachowsky KAA

PDB-6yeg:
Hybrid structure of the SPP1 tail tube by solid-state NMR and cryo EM - Final EM Refinement
Method: helical / : Zinke M, Sachowsky KAA, Zinn-Justin S, Ravelli R, Schroder GF, Habeck M, Lange A

PDB-6yq5:
Hybrid structure of the SPP1 tail tube by solid-state NMR and cryo EM - NMR Ensemble
Method: helical / : Zinke M, Sachowsky KAA, Zinn-Justin S, Ravelli R, Schroder GF, Habeck M, Lange A

EMDB-11522:
Fully-loaded anthrax lethal toxin in its heptameric pre-pore state, in which the third lethal factor is masked out (PA7LF3-masked)
Method: single particle / : Quentin D, Antoni C

EMDB-11523:
Fully-loaded anthrax lethal toxin in its heptameric pre-pore state and PA7LF(2+1B) arrangement
Method: single particle / : Quentin D, Antoni C, Gatsogiannis C, Raunser S

EMDB-11524:
Fully-loaded anthrax lethal toxin in its heptameric pre-pore state and PA7LF(2+1A) arrangement
Method: single particle / : Quentin D, Antoni C

EMDB-11525:
Fully-loaded anthrax lethal toxin in its heptameric pre-pore state and PA7LF(2+1A)' arrangement
Method: single particle / : Quentin D, Antoni C, Gatsogiannis C, Raunser S

EMDB-10287:
CLEM of resin-embedded GFP-Scs2 yeast cell shown in Figure 2A of publication
Method: electron tomography / : Hoffmann PC, Bharat TAM, Wozny MR, Boulanger J, Miller EA, Kukulski W

EMDB-10299:
CLEM of resin-embedded GFP-Ist2 yeast cell shown in Figure 2B of publication
Method: electron tomography / : Hoffmann PC, Bharat TAM, Wozny MR, Boulanger J, Miller EA, Kukulski W

EMDB-10300:
CLEM of resin-embedded Tcb3-GFP yeast cell shown in Figure 2C of publication
Method: electron tomography / : Hoffmann PC, Bharat TAM, Wozny MR, Boulanger J, Miller EA, Kukulski W

EMDB-10301:
CLEM of resin-embedded scs2/22 tcb1/2/3 deletion mutant yeast cell expressing GFP-Ist2 shown in Figure 2F of publication
Method: electron tomography / : Hoffmann PC, Bharat TAM, Wozny MR, Boulanger J, Miller EA, Kukulski W

EMDB-10302:
CLEM of resin-embedded scs2/22 ist2 deletion mutant yeast cell expressing Tcb3-GFP; shown in Figure 2G of publication
Method: electron tomography / : Hoffmann PC, Bharat TAM, Wozny MR, Boulanger J, Miller EA, Kukulski W

EMDB-10303:
CLEM of resin-embedded scs2/22 ist2 tcb1/2/3 deletion mutant yeast cell expressing Sec63-RFP from plasmid, shown in Figure 2H of publication
Method: electron tomography / : Hoffmann PC, Bharat TAM, Wozny MR, Boulanger J, Miller EA, Kukulski W

EMDB-10304:
CLEM of resin-embedded rtn1 yop1 deletion mutant yeast cell expressing Tcb3-GFP, shown in Figure 3C of publication
Method: electron tomography / : Hoffmann PC, Bharat TAM, Wozny MR, Boulanger J, Miller EA, Kukulski W

EMDB-10306:
CLEM of resin-embedded rtn1 yop1 deletion mutant yeast cell expressing Tcb3-GFP, shown in Figure 3E of publication
Method: electron tomography / : Hoffmann PC, Bharat TAM, Wozny MR, Boulanger J, Miller EA, Kukulski W

EMDB-10308:
cryo-ET of cryo-FIB milled yeast cell in which scs2/22 ist2 are deleted; shown in Figures 5A and S3B of publication
Method: electron tomography / : Hoffmann PC, Bharat TAM, Wozny MR, Boulanger J, Miller EA, Kukulski W

EMDB-10309:
cryo-ET of cryo-FIB milled yeast cell, in which scs2/22 ist2 are deleted, with high intracellular calcium; shown in Figures 5C and S3F
Method: electron tomography / : Hoffmann PC, Bharat TAM, Wozny MR, Boulanger J, Miller EA, Kukulski W

EMDB-10310:
cryo-ET of cryo-FIB milled yeast cell, in which Tcb3-GFP is overexpressed and scs2/22 ist2 tcb1/2 are deleted; shown in Figure 6 of publication
Method: electron tomography / : Hoffmann PC, Bharat TAM, Wozny MR, Boulanger J, Miller EA, Kukulski W

EMDB-4908:
Cryo-EM structure of the E. coli cytochrome bd-I oxidase at 2.68 A resolution
Method: single particle / : Safarian S, Hahn A

PDB-6rko:
Cryo-EM structure of the E. coli cytochrome bd-I oxidase at 2.68 A resolution
Method: single particle / : Safarian S, Hahn A, Kuehlbrandt W, Michel H

EMDB-0103:
Identification of a druggable VP1-VP3 interprotomer pocket in the capsid of enteroviruses
Method: single particle / : Geraets JA, Flatt JW

PDB-6gzv:
Identification of a druggable VP1-VP3 interprotomer pocket in the capsid of enteroviruses
Method: single particle / : Geraets JA, Flatt JW, Domanska A, Butcher SJ

EMDB-0246:
Leucine-zippered human insulin receptor ectodomain with single bound insulin - "lower" membrane-proximal part
Method: single particle / : Weis F, Menting JG, Margetts MB, Chan SJ, Xu Y, Tennagels N, Wohlfart P, Langer T, Mueller CW, Dreyer MK, Lawrence MC

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more