- PDB-2c9i: Structure of the fluorescent protein asFP499 from Anemonia sulcata -
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データを開く
IDまたはキーワード:
読み込み中...
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基本情報
登録情報
データベース: PDB / ID: 2c9i
タイトル
Structure of the fluorescent protein asFP499 from Anemonia sulcata
要素
GREEN FLUORESCENT PROTEIN ASFP499
キーワード
LUMINESCENT PROTEIN / FLUORESCENT PROTEIN / BETA-BARREL / BIOLUMINESCENCE / LUMINESCENCE
機能・相同性
Green Fluorescent Protein / Green fluorescent protein / Green fluorescent protein-related / Green fluorescent protein / Green fluorescent protein / bioluminescence / Beta Barrel / Mainly Beta / Green fluorescent protein as(S)FP499
SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS BELOW ... SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 14-STRANDED BARREL THIS IS REPRESENTED BY A 15-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 12-STRANDED BARREL THIS IS REPRESENTED BY A 13-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEETS PRESENTED AS "CA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 12-STRANDED BARREL THIS IS REPRESENTED BY A 13-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEETS PRESENTED AS "DA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 12-STRANDED BARREL THIS IS REPRESENTED BY A 13-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEETS PRESENTED AS "EA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 12-STRANDED BARREL THIS IS REPRESENTED BY A 13-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEETS PRESENTED AS "FA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 12-STRANDED BARREL THIS IS REPRESENTED BY A 13-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEETS PRESENTED AS "GA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 12-STRANDED BARREL THIS IS REPRESENTED BY A 13-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEETS PRESENTED AS "HA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 12-STRANDED BARREL THIS IS REPRESENTED BY A 13-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL.
A: GREEN FLUORESCENT PROTEIN ASFP499 B: GREEN FLUORESCENT PROTEIN ASFP499 C: GREEN FLUORESCENT PROTEIN ASFP499 D: GREEN FLUORESCENT PROTEIN ASFP499 E: GREEN FLUORESCENT PROTEIN ASFP499 F: GREEN FLUORESCENT PROTEIN ASFP499 G: GREEN FLUORESCENT PROTEIN ASFP499 H: GREEN FLUORESCENT PROTEIN ASFP499
pH: 8.5 詳細: 30 PERCENT PEG 4000, 0.1 M TRIS PH 8.5, 0.2 M MAGNESIUM CHLORIDE
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データ収集
回折
平均測定温度: 100 K
放射光源
由来: シンクロトロン / サイト: ELETTRA / ビームライン: 5.2R / 波長: 1
検出器
タイプ: MARRESEARCH / 検出器: CCD
放射
プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長
波長: 1 Å / 相対比: 1
反射
解像度: 1.85→30 Å / Num. obs: 128068 / % possible obs: 87.3 % / Observed criterion σ(I): 2 / 冗長度: 5.5 % / Rmerge(I) obs: 0.05 / Net I/σ(I): 17.5
反射 シェル
最高解像度: 1.85 Å / Rmerge(I) obs: 0.19 / Mean I/σ(I) obs: 2 / % possible all: 81.4
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解析
ソフトウェア
名称
バージョン
分類
REFMAC
5.2.0019
精密化
DENZO
データ削減
SCALEPACK
データスケーリング
AMoRE
位相決定
精密化
構造決定の手法: 分子置換 / 解像度: 1.82→50 Å / Cor.coef. Fo:Fc: 0.928 / Cor.coef. Fo:Fc free: 0.9 / SU B: 4.661 / SU ML: 0.143 / 交差検証法: THROUGHOUT / ESU R: 0.235 / ESU R Free: 0.199 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD / 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
反射数
%反射
Selection details
Rfree
0.292
6741
5 %
RANDOM
Rwork
0.245
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obs
0.248
128068
87.3 %
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溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.4 Å / 溶媒モデル: MASK