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EMN Papers
- Database of articles cited by 3DEM data entries -

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List of structure papers

Showing 1 - 20 of 2,332 items (all data)

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Structural basis of bacterial transcription activation

To Be Published,
Liu B / Hong C / Huang R / Yu Z / Steitz TA
Methods: EM (single particle)

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Cryo-EM Structure of Saccharomyces cerevisiae Target of Rapamycin Complex 2

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Palmitoylation Contributes to Membrane Curvature in Influenza A Virus Assembly and Hemagglutinin-Mediated Membrane Fusion.

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Design of coiled-coil protein-origami cages that self-assemble in vitro and in vivo.

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ProtoRAG and the Evolution of Domain Function in the RAG Transposase Family

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TORC1 organized in inhibited domains (TOROIDs) regulate TORC1 activity.

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Tectonic conformational changes of a coronavirus spike glycoprotein promote membrane fusion

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Nucleosome-Chd1 structure and implications for chromatin remodelling.

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Cryo-electron microscopy structure of the lysosomal calcium-permeable channel TRPML3.

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Structure of mammalian endolysosomal TRPML1 channel in nanodiscs.

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Human TRPML1 channel structures in open and closed conformations.

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Structure and mechanism of the two-component alpha-helical pore-forming toxin YaxAB.

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A structural model for microtubule minus-end recognition and protection by CAMSAP proteins.

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Fibril structure of amyloid-β(1-42) by cryo-electron microscopy.

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Molecular basis of human CD22 function and therapeutic targeting.

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Cryo-EM Structures Reveal Mechanism and Inhibition of DNA Targeting by a CRISPR-Cas Surveillance Complex.

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A pUL25 dimer interfaces the pseudorabies virus capsid and tegument.

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Minor surface capsid protein of sacbrood honeybee virus facilitates genome delivery

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Competing scaffolding proteins determine capsid size during mobilization of Staphylococcus aureus pathogenicity islands.

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A Human Bi-specific Antibody against Zika Virus with High Therapeutic Potential.

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About EMN Papers

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News

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Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

  • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
  • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
  • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

External links: The 2017 Nobel Prize in Chemistry - Press Release

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Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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Jun 16, 2017. Omokage search with filter

Omokage search with filter

  • Result of Omokage search can be filtered by keywords and the database types

Related info.: Omokage search

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Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

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Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

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EMN Papers

Database of articles cited by 3DEM data entries

  • Database of articles cited by 3DEM data entries in EMDB and PDB
  • Using PubMed data

Related info.: EMDB / PDB / Q: What is the data source of EM Navigator? / EM Navigator / Yorodumi Papers / Changes in new EM Navigator and Yorodumi

Read more