-List of structure papers
Showing 1 - 20 of 2,759 items (all data)
-Structural basis of pan-ebolavirus neutralization by an antibody targeting the glycoprotein fusion loop
-Cryo-EM structure of serotonin bound 5HT3A receptor (state 2)
-Prespliceosome structure provides insights into spliceosome assembly and regulation.
-Structures of human Patched and its complex with native palmitoylated sonic hedgehog.
-Cryo-EM structure of a fungal mitochondrial calcium uniporter.
-X-ray and cryo-EM structures of the mitochondrial calcium uniporter.
Nature, Year 2018
Chao Fan / Minrui Fan / Benjamin J Orlando / Nathan M Fastman / Jinru Zhang / Yan Xu / Melissa G Chambers / Xiaofang Xu / Kay Perry / Maofu Liao / Liang Feng
Methods: EM (single particle)
-Cryo-EM structures of fungal and metazoan mitochondrial calcium uniporters.
-Correcting errors in the BRCA1 warning system
-cryo-em structure of alpha-synuclein fiber
-The reovirus mu1 protein contributes to the environmental stability of virions
-Structural basis for regulation of inositol trisphosphate receptors by Ca2+ and IP3
-Cryo-EM structure of an essential Plasmodium vivax invasion complex.
Nature, Vol. 559, Issue 7712, Page 135-139, Year 2018
Jakub Gruszczyk / Rick K Huang / Li-Jin Chan / Sébastien Menant / Chuan Hong / James M Murphy / Yee-Foong Mok / Michael D W Griffin / Richard D Pearson / Wilson Wong / Alan F Cowman / Zhiheng Yu / Wai-Hong Tham
Methods: EM (single particle) / X-ray diffraction
-Cryo-EM structure of the polycystin 2-l1 ion channel.
-High-resolution Cryo-EM of Fab-labeled human parechovirus 3 provides mechanistic insights into neutralization and assembly
-Structure and assembly of competence co-regulated type 4 pilus from Enterohemorrhagic Escherichia coli
-Structure of RNA polymerase complex and genome within a dsRNA virus provides insights into the mechanisms of transcription and assembly.
Proc. Natl. Acad. Sci. U.S.A., Vol. 115, Issue 28, Page 7344-7349, Year 2018
Xurong Wang / Fuxian Zhang / Rui Su / Xiaowu Li / Wenyuan Chen / Qingxiu Chen / Tao Yang / Jiawei Wang / Hongrong Liu / Qin Fang / Lingpeng Cheng
Methods: EM (single particle)
-Virion structure and genome delivery mechanism of sacbrood honeybee virus.
-Conformational proofreading of distant 40S subunit maturation events by a long-range communication mechanism
-ComM is a hexameric helicase that promotes branch migration during natural transformation in diverse Gram-negative species.
-Structural basis for the recognition of Sonic Hedgehog by human Patched1.
+About EMN Papers
-Feb 20, 2018. PDBj/BINDS workshop in Osaka University
PDBj/BINDS workshop in Osaka University
-Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017
Three pioneers of this field were awarded Nobel Prize in Chemistry 2017
- Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
- Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
- Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.
External links: The 2017 Nobel Prize in Chemistry - Press Release
+Jul 12, 2017. Major update of PDB
Major update of PDB
- wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
- In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.
+Jun 16, 2017. Omokage search with filter
Omokage search with filter
- Result of Omokage search can be filtered by keywords and the database types
Related info.: Omokage search
+Sep 15, 2016. EM Navigator & Yorodumi renewed
EM Navigator & Yorodumi renewed
- New versions of EM Navigator and Yorodumi started
Related info.: Changes in new EM Navigator and Yorodumi
Database of articles cited by 3DEM data entries
- Database of articles cited by 3DEM data entries in EMDB and PDB
- Using PubMed data
Related info.: EMDB / PDB / Q: What is the data source of EM Navigator? / EM Navigator / Yorodumi Papers / Changes in new EM Navigator and Yorodumi