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EMN Papers
- Database of articles cited by 3DEM data entries -

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List of structure papers

Showing 1 - 20 of 3,056 items (all data)

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Calicivirus VP2 forms a portal-like assembly following receptor engagement.

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Structure of the post-translational protein translocation machinery of the ER membrane

Nature, Year 2018
Wu X / Cabanos C / Rapoport TA
Methods: EM (single particle)

0440

6nd1

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Structural Characterization of Pan-Ebolavirus Antibody 6D6 Targeting the Fusion Peptide of the Surface Glycoprotein.

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Structure of the posttranslational Sec protein-translocation channel complex from yeast.

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Components of the Reovirus Capsid Differentially Contribute to Stability.

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Cryo-EM structure of the human α1β3γ2 GABA receptor in a lipid bilayer.

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GABA receptor signalling mechanisms revealed by structural pharmacology.

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Structural basis of Notch recognition by human γ-secretase.

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Structural and functional analysis of the role of the chaperonin CCT in mTOR complex assembly

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Frozen-hydrated chromatin from metaphase chromosomes has an interdigitated multilayer structure.

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Cryo-EM of retinoschisin branched networks suggests an intercellular adhesive scaffold in the retina.

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The structure of the TRIM5aplha dimer assembled on the CA

To Be Published,
Skorupka KA / Pornillos O
Methods: EM (subtomogram averaging)

9364

9365

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A Nucleosome Bridging Mechanism for Activation of a Maintenance DNA Methyltransferase.

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Promoter Distortion and Opening in the RNA Polymerase II Cleft.

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Structure of mouse utricle hair cell stereocilia

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Structure reveals mechanism of CRISPR RNA-guided nuclease recruitment and anti-CRISPR viral mimicry.

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Porcine circovirus 2 uses a multitude of weak binding sites to interact with heparan sulfate, and the interactions do not follow the symmetry of the capsid.

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Collided ribosomes form a unique structural interface to induce Hel2-driven quality control pathways.

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Structural adaptations of photosynthetic complex I enable ferredoxin-dependent electron transfer.

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Structural Organization of a Type III-A CRISPR Effector Subcomplex Determined by X-ray Crystallography and Cryo-EM

To Be Published,
Dorsey BW / Huang L / Mondragon A
Methods: EM (single particle)

0442

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About EMN Papers

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News

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Feb 20, 2018. PDBj/BINDS workshop in Osaka University

PDBj/BINDS workshop in Osaka University

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    Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

    Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

    • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
    • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
    • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

    External links: The 2017 Nobel Prize in Chemistry - Press Release

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    Jul 12, 2017. Major update of PDB

    Major update of PDB

    • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
    • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

    External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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    Jun 16, 2017. Omokage search with filter

    Omokage search with filter

    • Result of Omokage search can be filtered by keywords and the database types

    Related info.: Omokage search

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    Sep 15, 2016. EM Navigator & Yorodumi renewed

    EM Navigator & Yorodumi renewed

    • New versions of EM Navigator and Yorodumi started

    Related info.: Changes in new EM Navigator and Yorodumi

    Read more

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    EMN Papers

    Database of articles cited by 3DEM data entries

    • Database of articles cited by 3DEM data entries in EMDB and PDB
    • Using PubMed data

    Related info.: EMDB / PDB / Q: What is the data source of EM Navigator? / EM Navigator / Yorodumi Papers / Changes in new EM Navigator and Yorodumi

    Read more