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EMN Papers
- Database of articles cited by 3DEM data entries -

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List of structure papers

Showing 1 - 20 of 2,977 items (all data)

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Germline VRC01 antibody recognition of a modified clade C HIV-1 envelope trimer and a glycosylated HIV-1 gp120 core

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A nucleotide-dependent conformational switch controls the polymerization of human IMP dehydrogenases to modulate their catalytic activity

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Visualization of clustered protocadherin neuronal self-recognition complexes

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Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome

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Cryo-EM structure of the HO BMC shell: Fully asymmetric reconstruction

to be published,
Greber BJ / Sutter M / Kerfeld CA
Methods: EM (single particle)

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The cryo-EM structure of the native butyrylcholinesterase tetramer reveals a dimer of dimers stabilized by a superhelical assembly

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The CryoEM Method MicroED as a Powerful Tool for Small Molecule Structure Determination

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Cryo-EM Reveals Ligand Induced Allostery Underlying InsP3R Channel Gating

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Structural basis of the nucleosome transition during RNA polymerase II passage.

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Representative tomogram of the COPII in vitro reconstitution used for subtomogram averaging

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Multiple Liquid Crystalline Geometries of Highly Compacted Nucleic Acid in a dsRNA Virus

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T20S proteasome

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Cryo-EM structure of membrane-bound Synaptotagmin 1 C2AB domains in a complex with the SNAREpin assembly in presence of Mg2+.

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Structural basis for anthrax toxin receptor 1 recognition by Seneca Valley Virus.

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Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes.

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ZNF598 Is a Quality Control Sensor of Collided Ribosomes.

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An electron transfer path connects subunits of a mycobacterial respiratory supercomplex.

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bovine glutamate dehydrogenase (18apr21a)

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Picomolar zinc binding modulates formation of Bcl10-nucleating assemblies of the caspase recruitment domain (CARD) of CARD9.

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Structure of a functional obligate respiratory supercomplex from Mycobacterium smegmatis

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About EMN Papers

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News

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Feb 20, 2018. PDBj/BINDS workshop in Osaka University

PDBj/BINDS workshop in Osaka University

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    Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

    Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

    • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
    • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
    • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

    External links: The 2017 Nobel Prize in Chemistry - Press Release

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    Jul 12, 2017. Major update of PDB

    Major update of PDB

    • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
    • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

    External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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    Jun 16, 2017. Omokage search with filter

    Omokage search with filter

    • Result of Omokage search can be filtered by keywords and the database types

    Related info.: Omokage search

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    Sep 15, 2016. EM Navigator & Yorodumi renewed

    EM Navigator & Yorodumi renewed

    • New versions of EM Navigator and Yorodumi started

    Related info.: Changes in new EM Navigator and Yorodumi

    Read more

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    EMN Papers

    Database of articles cited by 3DEM data entries

    • Database of articles cited by 3DEM data entries in EMDB and PDB
    • Using PubMed data

    Related info.: EMDB / PDB / Q: What is the data source of EM Navigator? / EM Navigator / Yorodumi Papers / Changes in new EM Navigator and Yorodumi

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