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EMN Papers
- Database of articles cited by 3DEM data entries -

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List of structure papers

Showing 1 - 20 of 2,463 items (all data)

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cryo-EM structure of the core Centromere Binding Factor 3 complex

To Be Published,
Zhang WJ / Lukoynova N / Miah S / Vaughan CK
Methods: EM (single particle)

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The Structure of Full-Length Kv Beta 2.1 Determined by Cryogenic Electron Microscopy

To Be Published,
Spear JM / Mendez JH / Danyuk Y / Stagg SM
Methods: EM (single particle)

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Structures of C1-IgG1 provide insights into how danger pattern recognition activates complement

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Structures of Teneurin adhesion receptors reveal an ancient fold for cell-cell interaction

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Structure of the yeast oligosaccharyltransferase complex gives insight into eukaryotic N-glycosylation.

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Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

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A 3.0-Angstrom Resolution Cryo-Electron Microscopy Structure and Antigenic Sites of Coxsackievirus A6-Like Particles.

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Cryo-EM reconstruction of AlfA from Bacillus subtilis reveals the structure of a simplified actin-like filament at 3.4 A resolution

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The peroxisomal AAA-ATPase Pex1/Pex6 unfolds substrates by processive threading.

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Cryo EM structure of intact rotary H+-ATPase/synthase from Thermus thermophilus.

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Shielding and Activation of a Viral Membrane Fusion Protein

To be published,
Halldorsson S / Li S / Li M / Harlos K / Bowden TA / Huiskonen JT
Methods: EM (single particle) / EM (single particle, icos. sym.)

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Molecular mechanism of promoter opening by RNA polymerase III

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Mechanisms of mTORC1 activation by RHEB and inhibition by PRAS40.

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Structural Dynamics Control Allosteric Activation of Cytohesin Family Arf GTPase Exchange Factors.

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Evolution of higher torque in Campylobacter-type bacterial flagellar motors.

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ATP Binding Enables Substrate Release from Multidrug Resistance Protein 1.

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Structure of Mycobacterium smegmatis RNA polymerase Sigma-A holoenzyme

To Be Published,
Kouba T / Krasny L / Barvik I
Methods: EM (single particle)

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3D Structural Dynamics of DNA Origami Mechanisms and Machines Using Individual-Particle Electron Tomography

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Structure of Mycobacterium smegmatis RNA polymerase core

To Be Published,
Kouba T / Krasny L / Barvik I
Methods: EM (single particle)

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Shielding and Activation of a Viral Membrane Fusion Protein

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About EMN Papers

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News

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Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

  • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
  • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
  • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

External links: The 2017 Nobel Prize in Chemistry - Press Release

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Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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Jun 16, 2017. Omokage search with filter

Omokage search with filter

  • Result of Omokage search can be filtered by keywords and the database types

Related info.: Omokage search

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Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

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Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

Read more

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EMN Papers

Database of articles cited by 3DEM data entries

  • Database of articles cited by 3DEM data entries in EMDB and PDB
  • Using PubMed data

Related info.: EMDB / PDB / Q: What is the data source of EM Navigator? / EM Navigator / Yorodumi Papers / Changes in new EM Navigator and Yorodumi

Read more