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Showing 1 - 50 of 374 items for (author: pak & a)

EMDB-55897:
DDK-salt stripped phosphorylated MCM2-7 DH
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-55904:
Cryo-EM structure of MCM2-7 DH bound to Sld3-Sld7 (composite map)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55918:
Cryo-EM structure of MCM2-7 DH bound to Sld3-Sld7, Cdc45 and DNA (composite map)
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-55972:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (consensus map, 882k particles)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55973:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (focused map: C2 DH core)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55974:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (focused map: Sld3 MRD1:Mcm6)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55975:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (focused map: Sld3 MRD2:Mcm4)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55976:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (focused map: Sld7:Mcm6)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55980:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (DH core C-lobe twist states consensus map, 511k particles)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55981:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (DH core C-lobe twist state I)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55982:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (DH core C-lobe twist state II)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55983:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (DH core C-lobe twist state III)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55985:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7, Cdc45 and DNA (consensus map, 107k particles)
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-55986:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7, Cdc45 and DNA (focused map: C2 DH core)
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-55987:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7, Cdc45 and DNA (focused map: Sld3 MRD1/2:Mcm4/6)
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-55988:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7, Cdc45 and DNA (focused map: Sld7:Mcm6)
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-55989:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7, Cdc45 and DNA (focused map: Sld3 STD/Cdc45:Mcm2/5)
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-55990:
3DFlex map of MCM2-7 DH-Sld3/7-Cdc45
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-56009:
Cryo-EM map of MCM2-7 DH bound to DNA and two copies of Sld3-Sld7 and Cdc45 (C1 symmetry)
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-56010:
Cryo-EM map of MCM2-7 DH bound to DNA and two copies of Sld3-Sld7 and Cdc45 (C2 symmetry)
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-56011:
Negative stain-EM map of crosslinked gradient purified Sld3-Sld7
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-56012:
Negative stain-EM map of crosslinked gradient purified Sld3-Sld7-Cdc45
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

PDB-9tgd:
DDK-salt stripped phosphorylated MCM2-7 DH
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

PDB-9tgm:
Cryo-EM structure of MCM2-7 DH bound to Sld3-Sld7
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

PDB-9th8:
Cryo-EM structure of MCM2-7 DH bound to Sld3-Sld7, Cdc45 and DNA
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-72097:
Structure of angiotensin II type 1 receptor bound to a b-arrestin biased allosteric modulator stabilized by a synthetic nanobody
Method: single particle / : Liu S, Peng X, Pakharukova N, Ahn S, Lefkowitz RJ

PDB-9q0f:
Structure of angiotensin II type 1 receptor bound to a b-arrestin biased allosteric modulator stabilized by a synthetic nanobody
Method: single particle / : Liu S, Peng X, Pakharukova N, Ahn S, Lefkowitz RJ

EMDB-77343:
Cryo-EM global density map of BA.1-S/2130WT/2196-S93Y
Method: single particle / : Du J, Pallesen J

EMDB-77344:
Structure of BA.1-S-RBD/2130WT/2196-S93Y
Method: single particle / : Du J, Pallesen J

EMDB-77347:
Cryo-EM global density map of BA.4-S/Ab#10-M30W-S94M IgG
Method: single particle / : Du J, Pallesen J

EMDB-77348:
Structure of BA.4-S-RBD/Ab#10-M30W-S94M
Method: single particle / : Du J, Pallesen J

PDB-36az:
Structure of BA.1-S-RBD/2130WT/2196-S93Y
Method: single particle / : Du J, Pallesen J

PDB-36bb:
Structure of BA.4-S-RBD/Ab#10-M30W-S94M
Method: single particle / : Du J, Pallesen J

EMDB-75946:
In situ cryo-ET analysis of mitochondria and autophagosome contact in tauP301S Tg mouse cortical neurons
Method: electron tomography / : Gonzalez CU, Jaber N

EMDB-75947:
In situ cryo-ET analysis of mitochondria and autophagosome contact in tauP301S Tg mouse cortical neurons Supplementary 1
Method: electron tomography / : Gonzalez CU, Jaber N

EMDB-75949:
In situ cryo-ET analysis of mitochondria and autophagosome contact in tauP301S Tg mouse cortical neurons Supplementary 2
Method: electron tomography / : Gonzalez CU, Jaber N

EMDB-74341:
PSI-IsiA Complex from Anabaena 7120
Method: single particle / : Mazor YM, Maqdisi RM, Gorski CG, Pakrasi HP, Biswas SB, Niedzwiedzki DN

PDB-9zjt:
PSI-IsiA Complex from Anabaena 7120
Method: single particle / : Mazor YM, Maqdisi RM, Gorski CG, Pakrasi HP, Biswas SB, Niedzwiedzki DN

EMDB-64644:
EMCV IRES captured on mammalian 40S with initiator tRNA
Method: single particle / : Das D, Hussain T

EMDB-64645:
EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2
Method: single particle / : Das D, Hussain T

EMDB-64646:
40S ribosome without initiation factors
Method: single particle / : Das D, Hussain T

PDB-9uzk:
EMCV IRES captured on mammalian 40S with initiator tRNA
Method: single particle / : Das D, Hussain T

PDB-9uzl:
EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2
Method: single particle / : Das D, Hussain T

PDB-9uzm:
40S ribosome without initiation factors
Method: single particle / : Das D, Hussain T

EMDB-73949:
Q23.MD39 in Complex with Fabs from antibodies CH01 and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-73950:
CryoEM map of CK52.1 in complex with Q23.V033GT
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

PDB-9z9l:
Q23.MD39 in Complex with Fabs from antibodies CH01 and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-72725:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BMS-986458 (local refined), a potent and selective BCL6 ligand directed degrader (LDD)
Method: single particle / : Zhu J, Fang W, Pagarigan B

PDB-9ya9:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BMS-986458 (local refined), a potent and selective BCL6 ligand directed degrader (LDD)
Method: single particle / : Zhu J, Fang W, Pagarigan B

EMDB-53353:
Structure of Oceanobacillus iheyensis group II intron domains D1-D6
Method: single particle / : Jadhav SS, Nigro M, Marcia M

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