[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 69 items for (author: kaji & a)

EMDB-39941:
Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in an interrogation state
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

EMDB-39942:
Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in an interrogation state
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

EMDB-39944:
Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in a translocation state
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

EMDB-39954:
Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in a catalytically active state
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

EMDB-65026:
PSI-LHCI of Euglena gracilis strain Z
Method: single particle / : Kato K, Nakajima Y, Shen JR, Nagao R

PDB-9vfj:
PSI-LHCI of Euglena gracilis strain Z
Method: single particle / : Kato K, Nakajima Y, Shen JR, Nagao R

EMDB-62499:
PSII-FCPII supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Kato K, Tsai PC, Nakajima Y, Akita F, Shen JR

EMDB-62790:
PSII-6 FCPII supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Kato K, Tsai PC, Nakajima Y, Akita F, Shen JR

PDB-9kqb:
PSII-FCPII supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Kato K, Tsai PC, Nakajima Y, Akita F, Shen JR

EMDB-62242:
PSI-LHCI of the red alga Galdieria sulphuraria NIES-3638
Method: single particle / : Kato K, Nakajima Y, Shen JR, Nagao R

PDB-9kc5:
PSI-LHCI of the red alga Galdieria sulphuraria NIES-3638
Method: single particle / : Kato K, Nakajima Y, Shen JR, Nagao R

EMDB-38457:
PSI-FCPI of the diatom Thalassiosira pseudonana CCMP1335
Method: single particle / : Kato K, Nakajima Y, Shen JR, Nagao R

PDB-8xls:
PSI-FCPI of the diatom Thalassiosira pseudonana CCMP1335
Method: single particle / : Kato K, Nakajima Y, Shen JR, Nagao R

EMDB-37480:
PSI-LHCI of the red alga Cyanidium caldarium RK-1 (NIES-2137)
Method: single particle / : Kato K, Hamaguchi T, Nakajima Y, Kawakami K, Yonekura K, Shen JR, Nagao R

PDB-8wey:
PSI-LHCI of the red alga Cyanidium caldarium RK-1 (NIES-2137)
Method: single particle / : Kato K, Hamaguchi T, Nakajima Y, Kawakami K, Yonekura K, Shen JR, Nagao R

EMDB-34981:
Cryo-EM structure of human NTCP-myr-preS1-YN9048Fab complex
Method: single particle / : Asami J, Shimizu T, Ohto U

EMDB-34982:
Cryo-EM structure of human NTCP-myr-preS1-YN9016Fab complex
Method: single particle / : Asami J, Shimizu T, Ohto U

PDB-8hrx:
Cryo-EM structure of human NTCP-myr-preS1-YN9048Fab complex
Method: single particle / : Asami J, Shimizu T, Ohto U

PDB-8hry:
Cryo-EM structure of human NTCP-myr-preS1-YN9016Fab complex
Method: single particle / : Asami J, Shimizu T, Ohto U

EMDB-33972:
Cryo-EM structure of the SARS-CoV-2 spike protein (3-up RBD) bound to neutralizing antibody CSW1-1805
Method: single particle / : Anzai I, Fujita J, Ono C, Kosaka Y, Miyamoto Y, Shichinohe S, Takada K, Torii S, Taguwa S, Suzuki K, Makino F, Kajita T, Inoue T, Namba K, Watanabe T, Matsuura Y

EMDB-33973:
Cryo-EM structure of the SARS-CoV-2 spike protein (1-up RBD) bound to neutralizing antibody CSW2-1353
Method: single particle / : Anzai I, Fujita J, Ono C, Kosaka Y, Miyamoto Y, Shichinohe S, Takada K, Torii S, Taguwa S, Suzuki K, Makino F, Kajita T, Inoue T, Namba K, Watanabe T, Matsuura Y

EMDB-33974:
Cryo-EM structure of the SARS-CoV-2 spike protein (2-up RBD) bound to neutralizing antibody CSW2-1353
Method: single particle / : Anzai I, Fujita J, Ono C, Kosaka Y, Miyamoto Y, Shichinohe S, Takada K, Torii S, Taguwa S, Suzuki K, Makino F, Kajita T, Inoue T, Namba K, Watanabe T, Matsuura Y

EMDB-33975:
Cryo-EM structure of the SARS-CoV-2 spike protein (2-up RBD) with C480A mutation
Method: single particle / : Anzai I, Fujita J, Ono C, Kosaka Y, Miyamoto Y, Shichinohe S, Takada K, Torii S, Taguwa S, Suzuki K, Makino F, Kajita T, Inoue T, Namba K, Watanabe T, Matsuura Y

EMDB-33593:
Structure of the Anabaena PSI-monomer-IsiA supercomplex
Method: single particle / : Nagao R, Kato K, Hamaguchi T, Kawakami K, Yonekura K, Shen JR

PDB-7y3f:
Structure of the Anabaena PSI-monomer-IsiA supercomplex
Method: single particle / : Nagao R, Kato K, Hamaguchi T, Kawakami K, Yonekura K, Shen JR

EMDB-31526:
human NTCP in complex with YN69083 Fab
Method: single particle / : Park JH, Iwamoto M

PDB-7fci:
human NTCP in complex with YN69083 Fab
Method: single particle / : Park JH, Iwamoto M, Yun JH, Uchikubo-Kamo T, Son D, Jin Z, Yoshida H, Ohki M, Ishimoto N, Mizutani K, Oshima M, Muramatsu M, Wakita T, Shirouzu M, Liu K, Uemura T, Nomura N, Iwata S, Watashi K, Tame JRH, Nishizawa T, Lee W, Park SY

EMDB-31455:
Cryo-EM Structure of primitive cyanobacterium photosystem I
Method: single particle / : Kato K, Hamaguchi T

EMDB-31062:
Structure of monomeric photosystem II
Method: single particle / : Yu H, Hamaguchi T

PDB-7eda:
Structure of monomeric photosystem II
Method: single particle / : Yu H, Hamaguchi T, Nakajima Y, Kato K, kawakami K, Akita F, Yonekura K, Shen JR

EMDB-30547:
Cryo-EM Structure of PSII at 1.95 angstrom resolution
Method: single particle / : Kato K, Miyazaki N

EMDB-30548:
Cryo-EM Structure of PSII at 2.08 angstrom resolution
Method: single particle / : Kato K, Miyazaki N

EMDB-30549:
Cryo-EM Structure of PSII at 2.22 angstrom resolution
Method: single particle / : Kato K, Miyazaki N, Hamaguchi T, Nakajima Y, Akita F, Yonekura K, Shen JR

EMDB-30550:
Cryo-EM Structure of PSII at 2.20 angstrom resolution
Method: single particle / : Kato K, Miyazaki N, Hamaguchi T, Nakajima Y, Akita F, Yonekura K, Shen JR

PDB-7d1t:
Cryo-EM Structure of PSII at 1.95 angstrom resolution
Method: single particle / : Kato K, Miyazaki N, Hamaguchi T, Nakajima Y, Akita F, Yonekura K, Shen JR

PDB-7d1u:
Cryo-EM Structure of PSII at 2.08 angstrom resolution
Method: single particle / : Kato K, Miyazaki N, Hamaguchi T, Nakajima Y, Akita F, Yonekura K, Shen JR

EMDB-12160:
Cilia from MOT7 deletion mutant of Chlamydomonas
Method: subtomogram averaging / : Noga A, Kutomi O, Yamamoto R, Nakagiri Y, Imai H, Obbineni JM, Zimmermann N, Ishikawa T, Wakabayashi K, Kon T, Inaba K

EMDB-12161:
Chlamydomonas cilia with MOT7-BCCP labeled
Method: subtomogram averaging / : Noga A, Kutomi O, Yamamoto R, Nakagiri Y, Imai H, Obbineni JM, Zimmermann N, Ishikawa T, Wakabayashi K, Kon T, Inaba K

EMDB-12162:
Microtubule doublet structure from WT Chlamydomonas as a control for MOT7 mutants
Method: subtomogram averaging / : Obbineni JM, Kutomi O, Yamamoto R, Nakagiri Y, Imai H, Noga A, Zimmermann N, Ishikawa T, Wakabayashi K, Kon T, Inaba K

EMDB-9908:
Structure of PSI-isiA supercomplex from Thermosynechococcus vulcanus
Method: single particle / : Akita F, Nagao R

PDB-6k33:
Structure of PSI-isiA supercomplex from Thermosynechococcus vulcanus
Method: single particle / : Akita F, Nagao R, Kato K, Shen JR, Miyazaki N

EMDB-10262:
Yeast 80S ribosome stalled on SDD1 mRNA.
Method: single particle / : Tesina P, Buschauer R

EMDB-10315:
The cryo-EM structure of SDD1-stalled collided trisome.
Method: single particle / : Tesina P, Buschauer R

PDB-6snt:
Yeast 80S ribosome stalled on SDD1 mRNA.
Method: single particle / : Tesina P, Buschauer R, Cheng J, Becker T, Beckmann R

PDB-6sv4:
The cryo-EM structure of SDD1-stalled collided trisome.
Method: single particle / : Tesina P, Buschauer R, Cheng J, Becker T, Beckmann R

EMDB-9530:
Cryo-EM structure of the model post-termination complex (PoTC) in the rotated state
Method: single particle / : Iwakura N, Yokoyama T, Quaglia F, Mitsuoka K, Mio K, Shigematsu H, Shirouzu M, Kaji A, Kaji H

EMDB-9531:
Cryo-EM structure of the model post-termination complex (PoTC) in the unrotated state
Method: single particle / : Iwakura N, Yokoyama T, Quaglia F, Mitsuoka K, Mio K, Shigematsu H, Shirouzu M, Kaji A, Kaji H

EMDB-9532:
Cryo-EM structure of the model post-termination complex (PoTC) after the ribosome recycling reaction
Method: single particle / : Iwakura N, Yokoyama T, Quaglia F, Mitsuoka K, Mio K, Shigematsu H, Shirouzu M, Kaji A, Kaji H

EMDB-9533:
Cryo-EM structure of the 70S ribosome from polysome
Method: single particle / : Iwakura N, Yokoyama T, Quaglia F, Mitsuoka K, Mio K, Shigematsu H, Shirouzu M, Kaji A, Kaji H

EMDB-8096:
The Architecture of the Cytoplasmic Region of Type III Secretion Systems
Method: subtomogram averaging / : Makino F, Shen D, Kajimura N, Kawamoto A, Pissaridou P, Oswin H, Pain M, Murillo I, Namba K, Blocker AJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more