2VV1

hPPARgamma Ligand binding domain in complex with 4-HDHA

Summary for 2VV1

Related2FVJ 1FM9 2PRG 1KNU 1RDT 1I7I 3PRG 1K74 1FM6 1ZGY 1PRG 2F4B 2VST 2G0H 2VSR 1WM0 4PRG 2G0G 1NYX 2VV0 2VV2 2VV3 2VV4
DescriptorPEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA, (4S,5E,7Z,10Z,13Z,16Z,19Z)-4-hydroxydocosa-5,7,10,13,16,19-hexaenoic acid, ... (4 entities in total)
Functional Keywordstranscription regulation, alternative splicing, ligand binding domain, nuclear receptor, diabetes mellitus, zinc-finger, dna-binding, polymorphism, transcription, zinc, obesity, nucleus, receptor, activator, oxidised fatty acid, transcription factor, metal-binding, phosphoprotein, disease mutation
Biological sourceHOMO SAPIENS (HUMAN)
Total number of polymer chains2
Total molecular weight63604.02
Authors
Itoh, T.,Fairall, L.,Schwabe, J.W.R. (deposition date: 2008-06-02, release date: 2008-08-19, Last modification date: 2019-05-08)
Primary citation
Itoh, T.,Fairall, L.,Amin, K.,Inaba, Y.,Szanto, A.,Balint, B.L.,Nagy, L.,Yamamoto, K.,Schwabe, J.W.R.
Structural Basis for the Activation of Pparg by Oxidised Fatty Acids
Nat.Struct.Mol.Biol., 15:924-, 2008
PubMed: 19172745 (PDB entries with the same primary citation)
DOI: 10.1038/NSMB.1474
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.2 Å)
NMR Information
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.28214 0.2% 4.1% 5.7%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 2vv1
no rotation
Molmil generated image of 2vv1
rotated about x axis by 90°
Molmil generated image of 2vv1
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 2vv1
no rotation
Molmil generated image of 2vv1
rotated about x axis by 90°
Molmil generated image of 2vv1
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (2vv1.pdb1.gz [44.5 KB])
Coordinate files for Biological unit (2vv1.pdb2.gz [42.27 KB])