4GY5
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CRYSTAL STRUCTURE OF THE TANDEM TUDOR DOMAIN AND PLANT HOMEODOMAIN OF UHRF1 WITH HISTONE H3K9ME3
Descriptor:E3 ubiquitin-protein ligase UHRF1, Peptide from Histone H3.3, ZINC ION
Authors:Cheng, J., Yang, Y., Fang, J., Xiao, J., Zhu, T., Chen, F., Wang, P., Xu, Y.
Deposit date:2012-09-05
Release date:2012-11-14
Last modified:2013-08-07
Method:X-RAY DIFFRACTION (2.956 Å)
Cite:Structural insight into coordinated recognition of trimethylated histone H3 lysine 9 (H3K9me3) by the plant homeodomain (PHD) and tandem tudor domain (TTD) of UHRF1 (ubiquitin-like, containing PHD and RING finger domains, 1) protein
J.Biol.Chem., 288, 2013
4LXL
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CRYSTAL STRUCTURE OF JMJD2B COMPLEXED WITH PYRIDINE-2,4-DICARBOXYLIC ACID AND H3K9ME3
Descriptor:Lysine-specific demethylase 4B, H3 peptide, PYRIDINE-2,4-DICARBOXYLIC ACID, ...
Authors:Wang, W.-C., Chu, C.-H., Chen, C.-C.
Deposit date:2013-07-30
Release date:2014-07-30
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Crystal structure of JMJD2B complexed with pyridine-2,4-dicarboxylic acid and H3K9me3
To be Published
4YHP
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CRYSTAL STRUCTURE OF 309M3-B FAB IN COMPLEX WITH H3K9ME3 PEPTIDE
Descriptor:H3K9me3 peptide, Fab Heavy Chain, Fab Light Chain
Authors:Hattori, T., Dementieva, I.S., Montano, S.P., Koide, S.
Deposit date:2015-02-27
Release date:2016-02-10
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Antigen clasping by two antigen-binding sites of an exceptionally specific antibody for histone methylation.
Proc.Natl.Acad.Sci.USA, 113, 2016
3R93
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CRYSTAL STRUCTURE OF THE CHROMO DOMAIN OF M-PHASE PHOSPHOPROTEIN 8 BOUND TO H3K9ME3 PEPTIDE
Descriptor:M-phase phosphoprotein 8, H3K9Me3 peptide, UNKNOWN ATOM OR ION
Authors:Li, J., Li, Z., Ruan, J., Xu, C., Tong, Y., Pan, P.W., Tempel, W., Crombet, L., Min, J., Zang, J., Structural Genomics Consortium (SGC)
Deposit date:2011-03-24
Release date:2011-04-06
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.057 Å)
Cite:Structural basis for specific binding of human MPP8 chromodomain to histone H3 methylated at lysine 9.
Plos One, 6, 2011
5XPI
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STRUCTURE OF UHRF1 TTD IN COMPLEX WITH NV01
Descriptor:E3 ubiquitin-protein ligase UHRF1, N-[3-(diethylamino)propyl]-2-(12-methyl-9-oxidanylidene-5-thia-1,10,11-triazatricyclo[6.4.0.0^2,6]dodeca-2(6),3,7,11-tetraen-10-yl)ethanamide
Authors:Luo, X., Zhao, K.
Deposit date:2017-06-02
Release date:2018-04-25
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Discovery of Small-Molecule Antagonists of the H3K9me3 Binding to UHRF1 Tandem Tudor Domain
SLAS Discov, 23, 2018
2L75
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SOLUTION STRUCTURE OF CHD4-PHD2 IN COMPLEX WITH H3K9ME3
Descriptor:Chromodomain-helicase-DNA-binding protein 4, 14-meric peptide from 1Histone H3.1, ZINC ION
Authors:Mansfield, R.E., Kwan, A.H., Mackay, J.P.
Deposit date:2010-12-02
Release date:2011-01-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Plant Homeodomain (PHD) Fingers of CHD4 Are Histone H3-binding Modules with Preference for Unmodified H3K4 and Methylated H3K9
J.Biol.Chem., 286, 2011
4U68
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CRYSTAL STRUCTURE OF RHINO CHROMODOMAIN IN COMPLEX WITH H3K9ME3
Descriptor:Rhino, peptide from Histone H3.1
Authors:Yu, B.W., Huang, Y.
Deposit date:2014-07-28
Release date:2015-08-05
Last modified:2016-05-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insights into Rhino-mediated germline piRNA cluster formation
Cell Res., 25, 2015
2L11
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SOLUTION NMR STRUCTURE OF THE CBX3 IN COMPLEX WITH H3K9ME3 PEPTIDE
Descriptor:Chromobox protein homolog 3, Histone H3
Authors:Kaustov, L., Lemak, A., Fares, C., Gutmanas, A., Quang, H., Loppnau, P., Min, J., Edwards, A., Arrowsmith, C., Structural Genomics Consortium (SGC)
Deposit date:2010-07-22
Release date:2010-08-04
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Recognition and specificity determinants of the human cbx chromodomains.
J.Biol.Chem., 286, 2011
2L12
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SOLUTION NMR STRUCTURE OF THE CHROMOBOX PROTEIN 7 WITH H3K9ME3
Descriptor:Chromobox homolog 7, Histone H3
Authors:Kaustov, L., Lemak, A., Gutmanas, A., Fares, C., Quang, H., Loppnau, P., Min, J., Edwards, A., Arrowsmith, C., Structural Genomics Consortium (SGC)
Deposit date:2010-07-22
Release date:2010-08-04
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Recognition and specificity determinants of the human cbx chromodomains.
J.Biol.Chem., 286, 2011
2RSN
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SOLUTION STRUCTURE OF THE CHROMODOMAIN OF CHP1 IN COMPLEX WITH H3K9ME3 PEPTIDE
Descriptor:Chromo domain-containing protein 1, peptide from Histone H3
Authors:Shimojo, H., Nishimura, Y.
Deposit date:2012-04-18
Release date:2012-08-29
Method:SOLUTION NMR
Cite:Intrinsic nucleic Acid-binding activity of chp1 chromodomain is required for heterochromatic gene silencing
Mol.Cell, 47, 2012
4IUR
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CRYSTAL STRUCTURE OF SHH1 SAWADEE DOMAIN IN COMPLEX WITH H3K9ME3 PEPTIDE
Descriptor:SHH1 SAWADEE, Histone H3.2, H3(1-15)K9me3, ...
Authors:Patel, D.J., Du, J.
Deposit date:2013-01-21
Release date:2013-05-01
Last modified:2013-07-10
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1.
Nature, 498, 2013
2Q8C
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CRYSTAL STRUCTURE OF JMJD2A IN TERNARY COMPLEX WITH AN HISTONE H3K9ME3 PEPTIDE AND 2-OXOGLUTARATE
Descriptor:JmjC domain-containing histone demethylation protein 3A, HISTONE 3 PEPTIDE, NICKEL (II) ION, ...
Authors:Couture, J.-F., Collazo, E., Ortiz-Tello, P., Brunzelle, J.S., Trievel, R.C.
Deposit date:2007-06-10
Release date:2007-07-03
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.047 Å)
Cite:Specificity and mechanism of JMJD2A, a trimethyllysine-specific histone demethylase.
Nat.Struct.Mol.Biol., 14, 2007
2RVN
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SOLUTION STRUCTURE OF THE CHROMODOMAIN OF HP1A WITH THE PHOSPHORYLATED N-TERMINAL TAIL COMPLEXED WITH H3K9ME3 PEPTIDE
Descriptor:Chromobox protein homolog 5, 18-mer peptide of Histone H3
Authors:Kawaguchi, A., Nishimura, Y.
Deposit date:2015-12-18
Release date:2016-03-16
Method:SOLUTION NMR
Cite:Extended string-like binding of the phosphorylated HP1 alpha N-terminal tail to the lysine 9-methylated histone H3 tail
Sci Rep, 6, 2016
3G7L
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CHROMODOMAIN OF CHP1 IN COMPLEX WITH HISTONE H3K9ME3 PEPTIDE
Descriptor:Chromo domain-containing protein 1, Histone H3.1/H3.2, ACETIC ACID, ...
Authors:Schalch, T., Joshua-Tor, L.
Deposit date:2009-02-10
Release date:2009-04-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:High-affinity binding of Chp1 chromodomain to K9 methylated histone H3 is required to establish centromeric heterochromatin
Mol.Cell, 34, 2009
3GV6
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CRYSTAL STRUCTURE OF HUMAN CHROMOBOX HOMOLOG 6 (CBX6) WITH H3K9 PEPTIDE
Descriptor:Chromobox protein homolog 6, Histone H3K9me3 peptide
Authors:Dong, A., Amaya, M.F., Li, Z., Loppnau, P., Kozieradzki, I., Edwards, A.M., Arrowsmith, C.H., Weigelt, J., Bountra, C., Bochkarev, A., Min, J., Ouyang, H., Structural Genomics Consortium (SGC)
Deposit date:2009-03-30
Release date:2009-04-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Recognition and specificity determinants of the human cbx chromodomains.
J.Biol.Chem., 286, 2011
3QL9
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MONOCLINIC COMPLEX STRUCTURE OF ATRX ADD BOUND TO HISTONE H3K9ME3 PEPTIDE
Descriptor:Transcriptional regulator ATRX, peptide of Histone H3.3, ZINC ION
Authors:Xiang, B., Li, H.
Deposit date:2011-02-02
Release date:2011-06-15
Last modified:2014-03-05
Method:X-RAY DIFFRACTION (0.93 Å)
Cite:ATRX ADD domain links an atypical histone methylation recognition mechanism to human mental-retardation syndrome
Nat.Struct.Mol.Biol., 18, 2011
3QLA
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HEXAGONAL COMPLEX STRUCTURE OF ATRX ADD BOUND TO H3K9ME3 PEPTIDE
Descriptor:Transcriptional regulator ATRX, peptide of Histone H3.3, ZINC ION, ...
Authors:Xiang, B., Li, H.
Deposit date:2011-02-02
Release date:2011-06-15
Last modified:2014-03-05
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:ATRX ADD domain links an atypical histone methylation recognition mechanism to human mental-retardation syndrome
Nat.Struct.Mol.Biol., 18, 2011
4GNG
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CRYSTAL STRUCTURE OF NSD3 TANDEM PHD5-C5HCH DOMAINS COMPLEXED WITH H3K9ME3 PEPTIDE
Descriptor:Histone-lysine N-methyltransferase NSD3, Histone H3.3, ZINC ION, ...
Authors:Li, F., He, C., Wu, J., Shi, Y.
Deposit date:2012-08-17
Release date:2013-01-02
Last modified:2013-09-04
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:The methyltransferase NSD3 has chromatin-binding motifs, PHD5-C5HCH, that are distinct from other NSD (nuclear receptor SET domain) family members in their histone H3 recognition.
J.Biol.Chem., 288, 2013
4HON
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CRYSTAL STRUCTURE OF HUMAN JMJD2D/KDM4D IN COMPLEX WITH AN H3K9ME3 PEPTIDE AND 2-OXOGLUTARATE
Descriptor:Lysine-specific demethylase 4D, Histone H3 Peptide, 2-OXOGLUTARIC ACID, ...
Authors:Krishnan, S., Trievel, R.C.
Deposit date:2012-10-22
Release date:2012-11-21
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.799 Å)
Cite:Structural and Functional Analysis of JMJD2D Reveals Molecular Basis for Site-Specific Demethylation among JMJD2 Demethylases.
Structure, 21, 2013
4QUF
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CRYSTAL STRUCTURE OF CHROMODOMAIN OF RHINO WITH H3K9ME3
Descriptor:RE36324p, H3(1-15)K9me3 peptide
Authors:Li, S., Patel, D.J.
Deposit date:2014-07-10
Release date:2014-08-20
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:Transgenerationally inherited piRNAs trigger piRNA biogenesis by changing the chromatin of piRNA clusters and inducing precursor processing.
Genes Dev., 28, 2014
3QLC
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COMPLEX STRUCTURE OF ATRX ADD DOMAIN BOUND TO UNMODIFIED H3 1-15 PEPTIDE
Descriptor:Transcriptional regulator ATRX, peptide of Histone H3.3, ZINC ION
Authors:Li, H., Patel, D.J.
Deposit date:2011-02-02
Release date:2011-06-15
Last modified:2014-03-05
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:ATRX ADD domain links an atypical histone methylation recognition mechanism to human mental-retardation syndrome
Nat.Struct.Mol.Biol., 18, 2011
3QLN
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CRYSTAL STRUCTURE OF ATRX ADD DOMAIN IN FREE STATE
Descriptor:Transcriptional regulator ATRX, ZINC ION
Authors:Li, H., Patel, D.J.
Deposit date:2011-02-03
Release date:2011-06-15
Last modified:2014-03-05
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:ATRX ADD domain links an atypical histone methylation recognition mechanism to human mental-retardation syndrome
Nat.Struct.Mol.Biol., 18, 2011
2Q8D
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CRYSTAL STRUCTURE OF JMJ2D2A IN TERNARY COMPLEX WITH HISTONE H3-K36ME2 AND SUCCINATE
Descriptor:JmjC domain-containing histone demethylation protein 3A, HISTONE 3 peptide, NICKEL (II) ION, ...
Authors:Couture, J.-F., Collazo, E., Ortiz-Tello, P., Brunzelle, J.S., Trievel, R.C.
Deposit date:2007-06-10
Release date:2007-07-03
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Specificity and mechanism of JMJD2A, a trimethyllysine-specific histone demethylase.
Nat.Struct.Mol.Biol., 14, 2007
2Q8E
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SPECIFICITY AND MECHANISM OF JMJD2A, A TRIMETHYLLYSINE-SPECIFIC HISTONE DEMETHYLASE
Descriptor:JmjC domain-containing histone demethylation protein 3A, histone 3 peptide, NICKEL (II) ION, ...
Authors:Couture, J.-F., Collazo, E., Ortiz-Tello, P., Brunzelle, J.S., Trievel, R.C.
Deposit date:2007-06-10
Release date:2007-07-03
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Specificity and mechanism of JMJD2A, a trimethyllysine-specific histone demethylase.
Nat.Struct.Mol.Biol., 14, 2007
3IUF
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CRYSTAL STRUCTURE OF THE C2H2-TYPE ZINC FINGER DOMAIN OF HUMAN UBI-D4
Descriptor:Zinc finger protein ubi-d4, ZINC ION
Authors:Tempel, W., Xu, C., Bian, C., Adams-Cioaba, M., Eryilmaz, J., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Min, J., Structural Genomics Consortium (SGC)
Deposit date:2009-08-31
Release date:2009-11-03
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the Cys2His2-type zinc finger domain of human DPF2.
Biochem.Biophys.Res.Commun., 413, 2011
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