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Legacy flatfile-incompatible PDB entries
13RZ
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BU of 13rz by Molmil
PanDDA analysis group deposition -- IDOL RING domain in complex with Z1118527729
Descriptor: 2-{[(1R,2R)-2-methylcyclopentyl]amino}ethan-1-ol, DIMETHYL SULFOXIDE, E3 ubiquitin-protein ligase MYLIP, ...
Authors:Bradshaw, W.J, Guenther, F, Murphy, E.J.
Deposit date:2025-10-10
Release date:2025-12-10
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:PanDDA analysis group deposition
To Be Published
13SA
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BU of 13sa by Molmil
PanDDA analysis group deposition -- IDOL RING domain in complex with Z1251361039
Descriptor: (2R)-2-hydroxy-N-[(Z)-(pyridin-2-yl)methylidene]propanamide, ACETATE ION, DIMETHYL SULFOXIDE, ...
Authors:Bradshaw, W.J, Guenther, F, Murphy, E.J.
Deposit date:2025-10-10
Release date:2025-12-10
Method:X-RAY DIFFRACTION (1.569 Å)
Cite:PanDDA analysis group deposition
To Be Published
13SD
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BU of 13sd by Molmil
PanDDA analysis group deposition -- IDOL RING domain in complex with Z1516316257
Descriptor: 3-ethyl-5-methyl-4-[(3-methyl-1H-pyrazol-1-yl)methyl]-1,2-oxazole, E3 ubiquitin-protein ligase MYLIP, ZINC ION
Authors:Bradshaw, W.J, Guenther, F, Murphy, E.J.
Deposit date:2025-10-10
Release date:2025-12-10
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:PanDDA analysis group deposition
To Be Published
13SG
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BU of 13sg by Molmil
PanDDA analysis group deposition -- IDOL RING domain in complex with Z1891773476
Descriptor: 1-[(2R)-2,3-dihydro-1,4-benzodioxin-2-yl]-N-methylmethanamine, DIMETHYL SULFOXIDE, E3 ubiquitin-protein ligase MYLIP, ...
Authors:Bradshaw, W.J, Guenther, F, Murphy, E.J.
Deposit date:2025-10-10
Release date:2025-12-10
Method:X-RAY DIFFRACTION (1.725 Å)
Cite:PanDDA analysis group deposition
To Be Published
13SH
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BU of 13sh by Molmil
PanDDA analysis group deposition -- IDOL RING domain in complex with Z234898049
Descriptor: 3-(5-methyl-1,2,4-oxadiazol-3-yl)aniline, E3 ubiquitin-protein ligase MYLIP, ZINC ION
Authors:Bradshaw, W.J, Guenther, F, Murphy, E.J.
Deposit date:2025-10-10
Release date:2025-12-10
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:PanDDA analysis group deposition
To Be Published
13SP
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BU of 13sp by Molmil
PanDDA analysis group deposition -- IDOL RING domain in complex with Z364577298
Descriptor: 1-[(3S)-3-methylmorpholin-4-yl]-2-[3-(trifluoromethyl)-1H-pyrazol-1-yl]ethan-1-one, E3 ubiquitin-protein ligase MYLIP, ZINC ION
Authors:Bradshaw, W.J, Guenther, F, Murphy, E.J.
Deposit date:2025-10-10
Release date:2025-12-10
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:PanDDA analysis group deposition
To Be Published
13SR
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BU of 13sr by Molmil
PanDDA analysis group deposition -- IDOL RING domain in complex with Z48852953
Descriptor: 4-methyl-N-{[(2S)-oxolan-2-yl]methyl}-1,3-thiazol-2-amine, DIMETHYL SULFOXIDE, E3 ubiquitin-protein ligase MYLIP, ...
Authors:Bradshaw, W.J, Guenther, F, Murphy, E.J.
Deposit date:2025-10-10
Release date:2025-12-10
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:PanDDA analysis group deposition
To Be Published
13ST
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BU of 13st by Molmil
PanDDA analysis group deposition -- IDOL RING domain in complex with Z608065044
Descriptor: DIMETHYL SULFOXIDE, E3 ubiquitin-protein ligase MYLIP, ZINC ION, ...
Authors:Bradshaw, W.J, Guenther, F, Murphy, E.J.
Deposit date:2025-10-10
Release date:2025-12-10
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:PanDDA analysis group deposition
To Be Published
13SW
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BU of 13sw by Molmil
PanDDA analysis group deposition -- IDOL RING domain in complex with POB0087
Descriptor: (3S)-3-(4-fluorophenyl)piperidine-3-carboxamide, E3 ubiquitin-protein ligase MYLIP, ZINC ION
Authors:Bradshaw, W.J, Guenther, F, Murphy, E.J.
Deposit date:2025-10-10
Release date:2025-12-10
Method:X-RAY DIFFRACTION (1.371 Å)
Cite:PanDDA analysis group deposition
To Be Published
13SX
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BU of 13sx by Molmil
PanDDA analysis group deposition -- IDOL RING domain in complex with POB0134
Descriptor: E3 ubiquitin-protein ligase MYLIP, ZINC ION, methyl (3R,4R)-4-(3-methoxyphenyl)oxane-3-carboxylate
Authors:Bradshaw, W.J, Guenther, F, Murphy, E.J.
Deposit date:2025-10-10
Release date:2025-12-10
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:PanDDA analysis group deposition
To Be Published
13SZ
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BU of 13sz by Molmil
PanDDA analysis group deposition -- IDOL RING domain in complex with NCL-00023835
Descriptor: 1-bromanyl-4-methylsulfonyl-benzene, DIMETHYL SULFOXIDE, E3 ubiquitin-protein ligase MYLIP, ...
Authors:Bradshaw, W.J, Guenther, F, Murphy, E.J.
Deposit date:2025-10-10
Release date:2025-12-10
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:PanDDA analysis group deposition
To Be Published
1BOS
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BU of 1bos by Molmil
SHIGA-LIKE TOXIN COMPLEXED WITH ITS RECEPTOR
Descriptor: SHIGA-LIKE TOXIN I B SUBUNIT, alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose, alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, ...
Authors:Ling, H, Boodhoo, A, Hazes, B, Cummings, M.D, Armstrong, G.D, Brunton, J.L, Read, R.J.
Deposit date:1998-01-13
Release date:1999-02-02
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the shiga-like toxin I B-pentamer complexed with an analogue of its receptor Gb3.
Biochemistry, 37, 1998
1VVJ
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BU of 1vvj by Molmil
Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Maehigashi, T, Dunkle, J.A, Dunham, C.M.
Deposit date:2013-05-24
Release date:2014-08-06
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (3.44000111574 Å)
Cite:Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
1VY4
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BU of 1vy4 by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Polikanov, Y.S, Steitz, T.A, Innis, C.A.
Deposit date:2014-05-13
Release date:2014-08-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
Nat.Struct.Mol.Biol., 21, 2014
1VY5
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BU of 1vy5 by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.
Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Polikanov, Y.S, Steitz, T.A, Innis, C.A.
Deposit date:2014-05-13
Release date:2014-08-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
Nat.Struct.Mol.Biol., 21, 2014
1VY6
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BU of 1vy6 by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.
Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Polikanov, Y.S, Steitz, T.A, Innis, C.A.
Deposit date:2014-05-13
Release date:2014-08-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
Nat.Struct.Mol.Biol., 21, 2014
1VY7
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BU of 1vy7 by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Polikanov, Y.S, Steitz, T.A, Innis, C.A.
Deposit date:2014-05-13
Release date:2014-08-20
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
Nat.Struct.Mol.Biol., 21, 2014
20XX
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BU of 20xx by Molmil
HIV-1 integrase core domain in complex with potent allosteric inhibitors
Descriptor: (2~{S})-2-[(3~{a}~{R},7~{a}~{R})-1'-ethyl-5'-methyl-spiro[1,3,3~{a},4,5,6,7,7~{a}-octahydroindene-2,3'-indene]-4'-yl]-2-[(2-methylpropan-2-yl)oxy]ethanoic acid, Integrase, PENTAETHYLENE GLYCOL, ...
Authors:Nomura, A, Orita, T, Furuzono, T, Adachi, T.
Deposit date:2025-12-02
Release date:2025-12-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Discovery and optimization of novel and potent allosteric HIV-1 integrase inhibitors with a spiro[indene] moiety
To Be Published
2BTJ
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BU of 2btj by Molmil
Fluorescent Protein EosFP - red form
Descriptor: Green to red photoconvertible GFP-like protein EosFP
Authors:Nar, H, Nienhaus, K, Wiedenmann, J, Nienhaus, G.U.
Deposit date:2005-06-01
Release date:2005-06-23
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis for Photo-Induced Protein Cleavage and Green-to-Red Conversion of Fluorescent Protein Eosfp.
Proc.Natl.Acad.Sci.USA, 102, 2005
2N6Z
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BU of 2n6z by Molmil
Solution structure of the salicylate-loaded ArCP from yersiniabactin synthetase
Descriptor: HMWP2 nonribosomal peptide synthetase, S-{2-[(N-{(2R)-2-hydroxy-3,3-dimethyl-4-[(trihydroxy-lambda~5~-phosphanyl)oxy]butanoyl}-beta-alanyl)amino]ethyl} 2-hydroxybenzene-1-carbothioate
Authors:Goodrich, A.C, Harden, B.J, Frueh, D.P.
Deposit date:2015-08-31
Release date:2015-09-23
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:Solution Structure of a Nonribosomal Peptide Synthetase Carrier Protein Loaded with Its Substrate Reveals Transient, Well-Defined Contacts.
J.Am.Chem.Soc., 137, 2015
2VVJ
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BU of 2vvj by Molmil
IrisFP fluorescent protein in its red form, cis conformation
Descriptor: Green to red photoconvertible GFP-like protein EosFP, SULFATE ION, SULFITE ION
Authors:Adam, V, Lelimousin, M, Boehme, S, Desfonds, G, Nienhaus, K, Field, M.J, Wiedenmann, J, McSweeney, S, Nienhaus, G.U, Bourgeois, D.
Deposit date:2008-06-09
Release date:2008-08-12
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Characterization of Irisfp, an Optical Highlighter Undergoing Multiple Photo-Induced Transformations.
Proc.Natl.Acad.Sci.USA, 105, 2008
3BCR
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BU of 3bcr by Molmil
Glycogen Phosphorylase b in complex with AZT
Descriptor: 3'-azido-3'-deoxythymidine, Glycogen phosphorylase, muscle form
Authors:Sovantzis, D.A, Hadjiloi, T, Hayes, J.M, Zographos, S.E, Chrysina, E.D, Oikonomakos, N.G.
Deposit date:2007-11-13
Release date:2008-11-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:D-Glucopyranosyl pyrimidine nucleoside binding to muscle glycogen phosphorylase b
To be Published
3J3Q
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BU of 3j3q by Molmil
Atomic-level structure of the entire HIV-1 capsid
Descriptor: capsid protein
Authors:Perilla, J.R, Zhao, G, Zhang, P, Schulten, K.J.
Deposit date:2013-04-12
Release date:2013-05-29
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY
Cite:Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics.
Nature, 497, 2013
3J3Y
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BU of 3j3y by Molmil
Atomic-level structure of the entire HIV-1 capsid (186 hexamers + 12 pentamers)
Descriptor: capsid protein
Authors:Perilla, J.R, Zhao, G, Zhang, P, Schulten, K.J.
Deposit date:2013-05-06
Release date:2013-05-29
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY
Cite:Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics.
Nature, 497, 2013
3J6B
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BU of 3j6b by Molmil
Structure of the yeast mitochondrial large ribosomal subunit
Descriptor: 21S ribosomal RNA, 54S ribosomal protein IMG1, mitochondrial, ...
Authors:Amunts, A, Brown, A, Bai, X.C, Llacer, J.L, Hussain, T, Emsley, P, Long, F, Murshudov, G, Scheres, S.H.W, Ramakrishnan, V.
Deposit date:2014-01-22
Release date:2014-04-09
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of the yeast mitochondrial large ribosomal subunit.
Science, 343, 2014

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