[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 165 items for (author: wu & sr)

EMDB-75840:
Cryo-EM structure of CRBN in complex with HBS1L and TNG-4857 (focused refinement)
Method: single particle / : Whittington DA

EMDB-75038:
Cryo-EM structure of CRBN-DDB1 in complex with HBS1L and TNG961
Method: single particle / : Whittington DA

EMDB-71770:
Structure of human serotonin transporter bound to small molecule zPZd in lipid nanodisc and NaCl
Method: single particle / : Billesboelle CB, Manglik A

EMDB-71775:
Locally-refined Mu-Opioid Receptor bound with novel compound 0505
Method: single particle / : Kim JY, Wu Y, Manglik A, Shoichet BK

PDB-9pns:
Structure of human serotonin transporter bound to small molecule zPZd in lipid nanodisc and NaCl
Method: single particle / : Billesboelle CB, Manglik A

PDB-9ppq:
Locally-refined Mu-Opioid Receptor bound with novel compound 0505 (3-[({[(1P)-1-(3-chlorophenyl)-1H-pyrazol-3-yl]methyl}amino)methyl]phenol)
Method: single particle / : Kim JY, Wu Y, Manglik A, Shoichet BK

EMDB-53353:
Structure of Oceanobacillus iheyensis group II intron domains D1-D6
Method: single particle / : Jadhav SS, Nigro M, Marcia M

PDB-9qtj:
Structure of Oceanobacillus iheyensis group II intron domains D1-D6
Method: single particle / : Jadhav SS, Nigro M, Marcia M

EMDB-72964:
Cryo-EM structure of IDH1 R132H
Method: single particle / : Hu L, Seo HS, Dhe-Paganon S, Berezuk AM, Tuttle KS, Zhu X, Subramaniam S, Wu X

EMDB-72965:
Cryo-EM structure of IDH1 R132H C269S
Method: single particle / : Hu L, Seo HS, Dhe-Paganon S, Berezuk AM, Tuttle KS, Zhu X, Subramaniam S, Wu X

PDB-9yha:
Cryo-EM structure of IDH1 R132H
Method: single particle / : Hu L, Seo HS, Dhe-Paganon S, Berezuk AM, Tuttle KS, Zhu X, Subramaniam S, Wu X

PDB-9yhb:
Cryo-EM structure of IDH1 R132H C269S
Method: single particle / : Hu L, Seo HS, Dhe-Paganon S, Berezuk AM, Tuttle KS, Zhu X, Subramaniam S, Wu X

EMDB-71783:
Locally-refined structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and compound Z7149
Method: single particle / : Srinivasan K, Wu Y, Billesboelle C, Kim JY, Manglik A, Shoichet BK

PDB-9pqd:
Locally-refined structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and compound Z7149
Method: single particle / : Srinivasan K, Wu Y, Billesboelle C, Kim JY, Manglik A, Shoichet BK

EMDB-49874:
CryoET tomogram of hESC-derived retinal ganglion cell treated with calcification media
Method: electron tomography / : Hou C, Wu GH, Patel HR, Liao YJ, Chiu W

EMDB-49875:
CryoET tomogram of hESC-derived retinal ganglion cell treated with potassium phosphate
Method: electron tomography / : Hou C, Wu GH, Patel HR, Liao YJ, Chiu W

EMDB-71718:
Locally-refined structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and N-(5-methylnaphthalen-1-yl)pyridin-4-amine (compound 4905)
Method: single particle / : Srinivasan K, Xu X, Mailhot O, Manglik A, Shoichet B

EMDB-71719:
Structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and N-(5-methylnaphthalen-1-yl)pyridin-4-amine (compound 4905)
Method: single particle / : Srinivasan K, Xu X, Mailhot O, Manglik A, Shoichet B

EMDB-61503:
Rat hepatitis E virus capsid protein E2s domain in complex with Fab C6
Method: single particle / : Liu L, Zheng Q, Li S, Xia N

EMDB-61504:
Hepatitis E virus capsid protein E2s domain (genotype I) in complex with Fab C6
Method: single particle / : Liu L, Zheng Q, Li S, Xia N

EMDB-61505:
Hepatitis E virus capsid protein E2s domain (genotype IV) in complex with Fab C6
Method: single particle / : Liu L, Zheng Q, Li S, Xia N

EMDB-61506:
Rat hepatitis E virus capsid protein E2s domain in complex with Fab C158
Method: single particle / : Liu L, Zheng Q, Li S, Xia N

EMDB-61507:
Hepatitis E virus capsid protein E2s domain (genotype I) in complex with Fab C158
Method: single particle / : Liu L, Zheng Q, Li S, Xia N

EMDB-61508:
Rat hepatitis E virus capsid protein E2s domain in complex with Fab C127
Method: single particle / : Liu L, Zheng Q, Li S, Xia N

EMDB-61509:
Rat hepatitis E virus capsid protein E2s domain in complex with Fab C131
Method: single particle / : Liu L, Zheng Q, Li S, Xia N

EMDB-61510:
Rat hepatitis E virus capsid protein E2s domain in complex with Fab C145
Method: single particle / : Liu L, Zheng Q, Li S, Xia N

EMDB-61511:
Rat hepatitis E virus capsid protein E2s domain in complex with Fab H4
Method: single particle / : Liu L, Zheng Q, Li S, Xia N

EMDB-61512:
Hepatitis E virus capsid protein E2s domain (genotype I) in complex with Fab H4
Method: single particle / : Liu L, Zheng Q, Li S, Xia N

PDB-9jie:
Rat hepatitis E virus capsid protein E2s domain in complex with Fab C6
Method: single particle / : Liu L, Zheng Q, Li S

PDB-9jif:
Hepatitis E virus capsid protein E2s domain (genotype I) in complex with Fab C6
Method: single particle / : Liu L, Zheng Q, Li S

PDB-9jig:
Hepatitis E virus capsid protein E2s domain (genotype IV) in complex with Fab C6
Method: single particle / : Liu L, Zheng Q, Li S

PDB-9jii:
Rat hepatitis E virus capsid protein E2s domain in complex with Fab C158
Method: single particle / : Liu L, Zheng Q, Li S

PDB-9jij:
Hepatitis E virus capsid protein E2s domain (genotype I) in complex with Fab C158
Method: single particle / : Liu L, Zheng Q, Li S

PDB-9jik:
Rat hepatitis E virus capsid protein E2s domain in complex with Fab C127
Method: single particle / : Liu L, Zheng Q, Li S

PDB-9jil:
Rat hepatitis E virus capsid protein E2s domain in complex with Fab C131
Method: single particle / : Liu L, Zheng Q, Li S

PDB-9jim:
Rat hepatitis E virus capsid protein E2s domain in complex with Fab C145
Method: single particle / : Liu L, Zheng Q, Li S

PDB-9jin:
Rat hepatitis E virus capsid protein E2s domain in complex with Fab H4
Method: single particle / : Liu L, Zheng Q, Li S

PDB-9jio:
Hepatitis E virus capsid protein E2s domain (genotype I) in complex with Fab H4
Method: single particle / : Liu L, Zheng Q, Li S

EMDB-48575:
G002-293-0536 Fab in complex with 001428_T278M_L14 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48591:
G002-480-0546 Fab in complex with V703-0537_T278M_L14 SOSIP and BG18 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9msd:
G002-293-0536 Fab in complex with 001428_T278M_L14 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9msy:
G002-480-0546 Fab in complex with V703-0537_T278M_L14 SOSIP and BG18 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48283:
61-12A01 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48286:
206-3G08 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48287:
206-9C09 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48290:
273-4D01 Fab in complex with HIV-1 BG505 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48291:
253-7A03 Fab in complex with HIV-1 BG505 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-70490:
BG505 GT1.1 SOSIP in complex with gp41-base epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70491:
BG505 GT1.1 SOSIP in complex with V1V2V3 epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70492:
BG505 GT1.1 SOSIP in complex with C3V5 epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more