[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 3,016 items for (author: lie & f)

EMDB-52524:
Ku70/80 bound to WRN-exo
Method: single particle / : Hardwick SW, Zahid S, Chaplin AK, Ropars R, Charbonnier JB

PDB-9hzg:
Ku70/80 bound to WRN-exo
Method: single particle / : Hardwick SW, Zahid S, Chaplin AK, Ropars R, Charbonnier JB

EMDB-55138:
Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)
Method: single particle / : Madru C, Bourgeois G, Mechulam Y, Schmitt E

PDB-9srd:
Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)
Method: single particle / : Madru C, Bourgeois G, Mechulam Y, Schmitt E

EMDB-51914:
Hexagonally Ordered Nanofibrils Easily Yield by dual Amphiphilic Self-Assembling Peptide
Method: helical / : Mazzotta F, Baptista LA, Schmidt M, Gacanin J, Lieberwirth I, Weil T, Landfester K

PDB-9h7u:
Hexagonally Ordered Nanofibrils Easily Yield by dual Amphiphilic Self-Assembling Peptide
Method: helical / : Mazzotta F, Baptista LA, Schmidt M, Gacanin J, Lieberwirth I, Weil T, Landfester K

EMDB-72367:
Teichoic acid flippase TacF from Streptococcus pneumoniae
Method: single particle / : Cebrero G, Chidananda HA, Denereaz JL, Cester E, Mathew AT, Bhowmik DR, Capitani M, Reymond JL, Kannan N, Veening JW, Mehdipour AR, Perez C

PDB-9xzn:
Teichoic acid flippase TacF from Streptococcus pneumoniae
Method: single particle / : Cebrero G, Chidananda HA, Denereaz JL, Cester E, Mathew AT, Bhowmik DR, Capitani M, Reymond JL, Kannan N, Veening JW, Mehdipour AR, Perez C

EMDB-54820:
Gephyrin E domain dimer G375D variant
Method: single particle / : Macha A, Gunkel M, Schwarz G, Behrmann E, Burdina N

EMDB-54821:
Gephyrin E domain dimer D422N variant
Method: single particle / : Macha A, Gunkel M, Schwarz G, Behrmann E, Burdina N

EMDB-54824:
Gephyrin E domain dimer R379D variant
Method: single particle / : Macha A, Gunkel M, Schwarz G, Behrmann E, Burdina N

EMDB-54972:
Cryo-EM structure of H. neapolitanus CsoSCA in oxidizing conditions, hexamer
Method: single particle / : Gaullier G, Vogiatzi N, Blikstad C

EMDB-54973:
Cryo-EM structure of H. neapolitanus CsoSCA in oxidizing conditions, dimer, major state, active conformation
Method: single particle / : Gaullier G, Vogiatzi N, Blikstad C

EMDB-54974:
Cryo-EM structure of H. neapolitanus CsoSCA in oxidizing conditions, dimer, minor state
Method: single particle / : Gaullier G, Vogiatzi N, Blikstad C

EMDB-54975:
Cryo-EM structure of H. neapolitanus CsoSCA in reducing conditions, hexamer
Method: single particle / : Gaullier G, Vogiatzi N, Blikstad C

EMDB-54976:
Cryo-EM structure of H. neapolitanus CsoSCA in reducing conditions, dimer, major state, inactive conformation
Method: single particle / : Gaullier G, Vogiatzi N, Blikstad C

EMDB-54977:
Cryo-EM structure of H. neapolitanus CsoSCA in reducing conditions, dimer, minor state
Method: single particle / : Gaullier G, Vogiatzi N, Blikstad C

EMDB-54978:
Cryo-EM structure of H. neapolitanus CsoSCA C283A/C284A inactive mutant, hexamer
Method: single particle / : Gaullier G, Vogiatzi N, Blikstad C

EMDB-54979:
Cryo-EM structure of H. neapolitanus CsoSCA C283A/C284A inactive mutant, dimer, state 1
Method: single particle / : Gaullier G, Vogiatzi N, Blikstad C

EMDB-54980:
Cryo-EM structure of H. neapolitanus CsoSCA C283A/C284A inactive mutant, dimer, state 2
Method: single particle / : Gaullier G, Vogiatzi N, Blikstad C

EMDB-74435:
Dimer of BrxC-BrxB fusion complexed with PglZ from the Acinetobacter BREX system
Method: single particle / : Doyle LA, Stoddard BL, Kaiser B, Kaiser A

PDB-9zn5:
Hybrid model of a dimer of BrxC-BrxB fusion complexed with PglZ from the Acinetobacter BREX system
Method: single particle / : Doyle LA, Stoddard BL, Kaiser B, Kaiser A

EMDB-56682:
In situ ribosome structure from environmental sample of Pseudo-nitzschia
Method: subtomogram averaging / : Leisch N, Pyle E

EMDB-70071:
CryoEM structure of mu-opioid receptor - Gi protein complex bound to fluornitrazene (FNZ)
Method: single particle / : Robertson MJ, Skiniotis G

PDB-9o36:
CryoEM structure of mu-opioid receptor - Gi protein complex bound to fluornitrazene (FNZ)
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-56971:
Molecular basis of ZPD homopolymerization: cryo-EM structure of a native vertebrate egg coat filament
Method: single particle / : Banjara S, Okumura H, Jovine L

PDB-28yj:
Molecular basis of ZPD homopolymerization: cryo-EM structure of a native vertebrate egg coat filament
Method: single particle / : Banjara S, Okumura H, Jovine L

EMDB-54629:
Ternary cryo-EM structure of yeast ALG3 with Dol25-PP-GlcNAc2Man5, Dol25-P-Man, and Fab
Method: single particle / : Alexander JAN, Chen SY, Mukherjee S, de Capitani M, Irobalieva RN, Rossi L, Agrawal P, Kowal J, Meirelles MA, Aebi M, Reymond JL, Kossiakoff AA, Riniker S, Locher KP

EMDB-54630:
Ternary cryo-EM structure of human ALG9 with Dol25-PP-GlcNAc2Man6, Dol25-P-Man and Fab
Method: single particle / : Alexander JAN, Chen SY, Mukherjee S, de Capitani M, Irobalieva RN, Rossi L, Agrawal P, Kowal J, Meirelles MA, Aebi M, Reymond JL, Kossiakoff AA, Riniker S, Locher KP

EMDB-54631:
Ternary cryo-EM structure of chicken ALG12 with Dol25-PP-GlcNAc2Man7, Dol25-P-Man, and Fab
Method: single particle / : Alexander JAN, Chen SY, Mukherjee S, de Capitani M, Irobalieva RN, Rossi L, Agrawal P, Kowal J, Meirelles MA, Aebi M, Reymond JL, Kossiakoff AA, Riniker S, Locher KP

EMDB-54632:
Ternary cryo-EM structure of human ALG9 with Dol25-PP-GlcNAc2Man8, Dol25-P-Man and Fab
Method: single particle / : Alexander JAN, Chen SY, Mukherjee S, de Capitani M, Irobalieva RN, Rossi L, Agrawal P, Kowal J, Meirelles MA, Aebi M, Reymond JL, Kossiakoff AA, Riniker S, Locher KP

PDB-9s6r:
Ternary cryo-EM structure of yeast ALG3 with Dol25-PP-GlcNAc2Man5, Dol25-P-Man, and Fab
Method: single particle / : Alexander JAN, Chen SY, Mukherjee S, de Capitani M, Irobalieva RN, Rossi L, Agrawal P, Kowal J, Meirelles MA, Aebi M, Reymond JL, Kossiakoff AA, Riniker S, Locher KP

PDB-9s6s:
Ternary cryo-EM structure of human ALG9 with Dol25-PP-GlcNAc2Man6, Dol25-P-Man and Fab
Method: single particle / : Alexander JAN, Chen SY, Mukherjee S, de Capitani M, Irobalieva RN, Rossi L, Agrawal P, Kowal J, Meirelles MA, Aebi M, Reymond JL, Kossiakoff AA, Riniker S, Locher KP

PDB-9s6t:
Ternary cryo-EM structure of chicken ALG12 with Dol25-PP-GlcNAc2Man7, Dol25-P-Man, and Fab
Method: single particle / : Alexander JAN, Chen SY, Mukherjee S, de Capitani M, Irobalieva RN, Rossi L, Agrawal P, Kowal J, Meirelles MA, Aebi M, Reymond JL, Kossiakoff AA, Riniker S, Locher KP

PDB-9s6u:
Ternary cryo-EM structure of human ALG9 with Dol25-PP-GlcNAc2Man8, Dol25-P-Man and Fab
Method: single particle / : Alexander JAN, Chen SY, Mukherjee S, de Capitani M, Irobalieva RN, Rossi L, Agrawal P, Kowal J, Meirelles MA, Aebi M, Reymond JL, Kossiakoff AA, Riniker S, Locher KP

EMDB-50014:
Structure of the small subunit of the flowering plant mitoribosome with the maturation factor RsgA
Method: single particle / : Waltz F, Skaltsogiannis V, Giege P

PDB-9evt:
Structure of the small subunit of the flowering plant mitoribosome with the maturation factor RsgA
Method: single particle / : Waltz F, Skaltsogiannis V, Giege P

EMDB-53563:
Non-uniform refine map MiDAC complex
Method: single particle / : Fairall L, Schwabe JWR

EMDB-53564:
Focussed map (top) MiDAC complex
Method: single particle / : Fairall L, Schwabe JWR

EMDB-53565:
Focussed map (bottom) MiDAC complex
Method: single particle / : Fairall L, Schwabe JWR

EMDB-53566:
Focussed map (middle) MiDAC complex
Method: single particle / : Fairall L, Schwabe JWR

EMDB-45484:
Transferrin Binding Protein A in complex with transferrin (iron bound in N lobe only)
Method: single particle / : Dubey S, Noinaj N

EMDB-45730:
Transferrin Binding Protein A in complex with transferrin binding protein B and transferrin (iron bound to N lobe only)
Method: single particle / : Dubey S, Noinaj N

PDB-9cdq:
Transferrin Binding Protein A in complex with transferrin (iron bound in N lobe only)
Method: single particle / : Dubey S, Noinaj N

PDB-9clt:
Transferrin Binding Protein A in complex with transferrin binding protein B and transferrin (iron bound to N lobe only)
Method: single particle / : Dubey S, Noinaj N

EMDB-47752:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

EMDB-47805:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

PDB-9e93:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

PDB-9e9v:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

EMDB-70083:
Human 80S ribosome stalled on MYC nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more