[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 193 items for (author: kubo & s)

EMDB-64036:
Cryo-EM structure of the Lhcp trimer from Ostreococcus tauri at 1.94 angstrom resolution
Method: single particle / : Seki S, Kubota M, Ishii A, Kim E, Tanaka H, Miyata T, Namba K, Kurisu G, Minagawa J, Fujii R

PDB-9uc6:
Cryo-EM structure of the Lhcp trimer from Ostreococcus tauri at 1.94 angstrom resolution
Method: single particle / : Seki S, Kubota M, Ishii A, Kim E, Tanaka H, Miyata T, Namba K, Kurisu G, Minagawa J, Fujii R

EMDB-66326:
Tomogram of doublet microtubules with bound dynein-2 molecules
Method: electron tomography / : He HK, Chen X, Lv QH, Ichikawa M

EMDB-63636:
Octopamine receptor b2 with bound DPMF
Method: single particle / : Hori T, Katsuta K, Shirouzu M

EMDB-63638:
octopamine b2 receptor with bound octopamine
Method: single particle / : Hori T, Katsuta K, Shirouzu M

EMDB-62399:
CryoEM structure of Pleurocybella porrigens lectin (PPL) in complex with GalNAc
Method: single particle / : Ishimoto N, Adachi D, Kawabata H, Park SY, Tame JRH, Kamata K

PDB-9kl3:
CryoEM structure of Pleurocybella porrigens lectin (PPL) in complex with GalNAc
Method: single particle / : Ishimoto N, Adachi D, Kawabata H, Park SY, Tame JRH, Kamata K

EMDB-61685:
Cryo-EM structure of the zeaxanthin-bound light-driven proton pumping rhodopsin, NM-R1
Method: single particle / : Hosaka T, Shirouzu M

EMDB-61686:
Cryo-EM structure of the myxol-bound light-driven proton pumping rhodopsin, NM-R1
Method: single particle / : Hosaka T, Shirouzu M

EMDB-61687:
Cryo-EM structure of the myxol-bound light-driven chloride ion-pumping rhodopsin, NM-R3
Method: single particle / : Hosaka T, Shirouzu M

EMDB-61688:
Cryo-EM structure of the light-driven chloride ion-pumping rhodopsin, NM-R3
Method: single particle / : Hosaka T, Shirouzu M

EMDB-62659:
Cryo-EM structure of the LGI1 LRR-LGI1 EPTP-ADAM22 ECD complex
Method: single particle / : Yamaguchi T, Okatsu K, Kubota M, Mitsumori A, Yamagata A, Fukai S

EMDB-62668:
Cryo-EM structure of the 3:3 LGI1-ADAM22 complex
Method: single particle / : Yamaguchi T, Okatsu K, Kubota M, Mistumori A, Yamagata A, Fukai S

PDB-9kzc:
Cryo-EM structure of the LGI1 LRR-LGI1 EPTP-ADAM22 ECD complex
Method: single particle / : Yamaguchi T, Okatsu K, Kubota M, Mitsumori A, Yamagata A, Fukai S

PDB-9kzt:
Cryo-EM structure of the 3:3 LGI1-ADAM22 complex
Method: single particle / : Yamaguchi T, Okatsu K, Kubota M, Mistumori A, Yamagata A, Fukai S

EMDB-45039:
Cryo-EM structure of amyloid fibril extracted from nerve of a variant ATTR V30M amyloidosis patient
Method: helical / : Nguyen AB, Afrin S, Yakubovska A, Saelices L

EMDB-45074:
Cryo-EM structure of cardiac amyloid fibril from a variant ATTR V30M amyloidosis patient
Method: helical / : Nguyen AB, Afrin S, Yakubovska A, Saelices L

PDB-9byn:
Cryo-EM structure of amyloid fibril extracted from nerve of a variant ATTR V30M amyloidosis patient
Method: helical / : Nguyen AB, Afrin S, Yakubovska A, Saelices L

PDB-9bzs:
Cryo-EM structure of cardiac amyloid fibril from a variant ATTR V30M amyloidosis patient
Method: helical / : Nguyen AB, Afrin S, Yakubovska A, Saelices L

EMDB-61095:
Structure of photosynthetic LH1-RC complex from the purple bacterium Blastochloris tepida
Method: single particle / : Kimura Y, Kanno R, Mori K, Matsuda Y, Seto R, Takenaka S, Mino H, Ohkubo T, Honda M, Sasaki YC, Kishikawa J, Mitsuoka K, Mio K, Hall M, Purba ER, Mochizuki T, Mizoguchi A, Humbel BM, Madigan MT, Wang-Otomo ZY, Tani K

PDB-9j2f:
Structure of photosynthetic LH1-RC complex from the purple bacterium Blastochloris tepida
Method: single particle / : Kimura Y, Kanno R, Mori K, Matsuda Y, Seto R, Takenaka S, Mino H, Ohkubo T, Honda M, Sasaki YC, Kishikawa J, Mitsuoka K, Mio K, Hall M, Purba ER, Mochizuki T, Mizoguchi A, Humbel BM, Madigan MT, Wang-Otomo ZY, Tani K

EMDB-60685:
Structure of influenza A virus RNA polymerase PB1 and nuclear import host factor RanBP5 complex
Method: single particle / : Uchikubo-Kamo T, Ishimoto N, Park SY

PDB-9im6:
Structure of influenza A virus RNA polymerase PB1 and nuclear import host factor RanBP5 complex
Method: single particle / : Uchikubo-Kamo T, Ishimoto N, Park SY

EMDB-37751:
Cryo-EM structure of T. pseudonana PyShell helical tube
Method: helical / : Kawamoto A, Tohda R, Gerle C, Kurisu G

PDB-8wqp:
Cryo-EM structure of T. pseudonana PyShell helical tube
Method: helical / : Kawamoto A, Tohda R, Gerle C, Kurisu G

EMDB-18709:
Subtomogram average of the T. pseudonana PyShell
Method: subtomogram averaging / : Demulder M, Righetto RD, Wietrzynski W, Lamm L, Engel BD

EMDB-18710:
Tomogram of P. tricornutum pyrenoid
Method: electron tomography / : Demulder M, Righetto RD, Wietrzynski W, Lamm L, Engel BD

EMDB-18711:
Tomogram of T. pseudonana pyrenoid
Method: electron tomography / : Demulder M, Righetto RD, Wietrzynski W, Lamm L, Engel BD

EMDB-18712:
Tomogram of PyShell mutant (M1) T. pseudonana
Method: electron tomography / : Demulder M, Righetto RD, Wietrzynski W, Lamm L, Engel BD

EMDB-18713:
Tomogram of PyShell mutant (M2) T. pseudonana
Method: electron tomography / : Demulder M, Righetto RD, Wietrzynski W, Lamm L, Engel BD

EMDB-18841:
Tomogram of T. pseudonana pyrenoid used for subtomogram avergaing
Method: electron tomography / : Demulder M, Righetto RD, Wietrzynski W, Lamm L, Engel BD

EMDB-36989:
Full agonist-bound mu-type opioid receptor-G protein complex
Method: single particle / : Uchikubo-Kamo T, Shirouzu M, Hisano T, Imai S, Kaneko S, Shimada I

EMDB-36990:
Full agonist- and positive allosteric modulator-bound mu-type opioid receptor-G protein complex
Method: single particle / : Uchikubo-Kamo T, Shirouzu M, Hisano T, Imai S, Kaneko S, Shimada I

PDB-8k9k:
Full agonist-bound mu-type opioid receptor-G protein complex
Method: single particle / : Hisano T, Uchikubo-Kamo T, Shirouzu M, Imai S, Kaneko S, Shimada I

PDB-8k9l:
Full agonist- and positive allosteric modulator-bound mu-type opioid receptor-G protein complex
Method: single particle / : Hisano T, Uchikubo-Kamo T, Shirouzu M, Imai S, Kaneko S, Shimada I

EMDB-40436:
48-nm doublet microtubule from Tetrahymena thermophila strain MEC17
Method: single particle / : Black CS, Kubo S, Yang SK, Bui KH

PDB-8sf7:
48-nm doublet microtubule from Tetrahymena thermophila strain MEC17
Method: single particle / : Black CS, Kubo S, Yang SK, Bui KH

EMDB-36223:
Cryo-EM structure of the GI.4 Chiba VLP complexed with the CV-1A1 Fv-clasp
Method: single particle / : Hosaka T, Katsura K, Kimura-Someya T, Someya Y, Shirouzu M

PDB-8jg5:
Cryo-EM structure of the GI.4 Chiba VLP complexed with the CV-1A1 Fv-clasp
Method: single particle / : Hosaka T, Katsura K, Kimura-Someya T, Someya Y, Shirouzu M

EMDB-17171:
CTE typeI tau filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17173:
CTE typeIII tau filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17174:
CTE typeII tau filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17175:
TMEM106B Fold1-s filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17176:
TMEM106B Fold I-d filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17177:
Ab typeII filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17178:
CTE typeI tau filament from Kii ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17179:
TypeII tau filament from Kii ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17180:
CTE typeIII tau filament
Method: helical / : Tetter S, Qi C, Ryskeldi-Falcon B, Scheres SHW, Goedert M

EMDB-17181:
PHF tau filament from Kii ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8ot6:
CTE typeI tau filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more