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Structure paper

TitleIntracellular carotenoids enhance the pump activation of microbial rhodopsin in two ways: The light-harvesting antenna and the photocycle acceleration
Journal, issue, pagesTo Be Published
Publish dateSep 25, 2024 (structure data deposition date)
AuthorsFujiwara T / Hosaka T / Hasegawa-Takano M / Nishimura Y / Tominaga K / Mori K / Nishino S / Kawasaki Y / Takahashi Y / Uchikubo-Kamo T ...Fujiwara T / Hosaka T / Hasegawa-Takano M / Nishimura Y / Tominaga K / Mori K / Nishino S / Kawasaki Y / Takahashi Y / Uchikubo-Kamo T / Hanada K / Takaichi S / Inoue K / Shirouzu M / Yoshizawa S
External linksSearch PubMed
MethodsEM (single particle)
Resolution2.27 - 2.5 Å
Structure data

61685

9jou

EMDB-61685, PDB-9jou:
Cryo-EM structure of the zeaxanthin-bound light-driven proton pumping rhodopsin, NM-R1
Method: EM (single particle) / Resolution: 2.46 Å

61686

9jov

EMDB-61686, PDB-9jov:
Cryo-EM structure of the myxol-bound light-driven proton pumping rhodopsin, NM-R1
Method: EM (single particle) / Resolution: 2.27 Å

61687

9jow

EMDB-61687, PDB-9jow:
Cryo-EM structure of the myxol-bound light-driven chloride ion-pumping rhodopsin, NM-R3
Method: EM (single particle) / Resolution: 2.48 Å

61688

9jox

EMDB-61688, PDB-9jox:
Cryo-EM structure of the light-driven chloride ion-pumping rhodopsin, NM-R3
Method: EM (single particle) / Resolution: 2.5 Å

Chemicals

ChemComp-RET:
RETINAL

ChemComp-R16:
HEXADECANE

ChemComp-D12:
DODECANE

ChemComp-K3I:
Zeaxanthin

ChemComp-HOH:
WATER

PDB-1l4o:
Unknown entry

ChemComp-CL:
Unknown entry

ChemComp-PC1:
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE / phospholipid*YM

ChemComp-PLC:
DIUNDECYL PHOSPHATIDYL CHOLINE / phospholipid*YM

ChemComp-8K6:
Octadecane

ChemComp-C14:
TETRADECANE

ChemComp-D10:
DECANE

Source
  • nonlabens marinus s1-08 (bacteria)
KeywordsMEMBRANE PROTEIN / proton pump rhodopsin RETINAL CELL-FREE SYNTHESIS Bacterial type rhodopsin / zeaxanthin / chloride ion-pumping rhodopsin RETINAL CELL-FREE SYNTHESIS Bacterial type rhodopsin

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