?

Mine: Large structure entries

3K1Q
  • Download 3k1q
  • View 3k1q
Molmil generated image of 3k1q
BACKBONE MODEL OF AN AQUAREOVIRUS VIRION BY CRYO-ELECTRON MICROSCOPY AND BIOINFORMATICS
Descriptor:Core protein VP6, Outer capsid VP5, Outer capsid VP7, ...
Authors:Cheng, L.P., Zhu, J., Hiu, W.H., Zhang, X.K., Honig, B., Fang, Q., Zhou, Z.H.
Deposit date:2009-09-28
Release date:2010-03-23
Last modified:2015-01-14
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Backbone Model of an Aquareovirus Virion by Cryo-Electron Microscopy and Bioinformatics
J.Mol.Biol., 397, 2010
3J3Y
  • Download 3j3y
  • View 3j3y
Molmil generated image of 3j3y
ATOMIC-LEVEL STRUCTURE OF THE ENTIRE HIV-1 CAPSID (186 HEXAMERS + 12 PENTAMERS)
Descriptor:capsid protein
Authors:Perilla, J.R., Zhao, G., Zhang, P., Schulten, K.J.
Deposit date:2013-05-06
Release date:2013-05-29
Last modified:2014-12-10
Method:ELECTRON MICROSCOPY
Cite:Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics.
Nature, 497, 2013
3J3Q
  • Download 3j3q
  • View 3j3q
Molmil generated image of 3j3q
ATOMIC-LEVEL STRUCTURE OF THE ENTIRE HIV-1 CAPSID
Descriptor:capsid protein
Authors:Perilla, J.R., Zhao, G., Zhang, P., Schulten, K.J.
Deposit date:2013-04-12
Release date:2013-05-29
Last modified:2014-12-10
Method:ELECTRON MICROSCOPY
Cite:Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics.
Nature, 497, 2013
4BP7
  • Download 4bp7
  • View 4bp7
Molmil generated image of 4bp7
ASYMMETRIC STRUCTURE OF A VIRUS-RECEPTOR COMPLEX
Descriptor:COAT PROTEIN
Authors:Dent, K.C., Thompson, R., Barker, A.M., Barr, J.N., Hiscox, J.A., Stockley, P.G., Ranson, N.A.
Deposit date:2013-05-23
Release date:2013-07-17
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (39 Å)
Cite:The Asymmetric Structure of an Icosahedral Virus Bound its Receptor Suggests a Mechanism for Genome Release.
Structure, 21, 2013
4BTS
  • Download 4bts
  • View 4bts
Molmil generated image of 4bts
THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A
Descriptor:18S RRNA, 40S RIBOSOMAL PROTEIN RACK1, 40S RIBOSOMAL PROTEIN RPS10E, ...
Authors:Weisser, M., Voigts-Hoffmann, F., Rabl, J., Leibundgut, M., Ban, N.
Deposit date:2013-06-19
Release date:2013-07-17
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3.703 Å)
Cite:The Crystal Structure of the Eukaryotic 40S Ribosomal Subunit in Complex with Eif1 and Eif1A
Nat.Struct.Mol.Biol., 20, 2013
4O9Y
  • Download 4o9y
  • View 4o9y
Molmil generated image of 4o9y
CRYSTAL STRUCTURE OF TCDA1
Descriptor:TcdA1
Authors:Meusch, D., Gatsogiannis, C., Efremov, R.G., Lang, A.E., Hofnagel, O., Vetter, I.R., Aktories, K., Raunser, S.
Deposit date:2014-01-03
Release date:2014-02-26
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3.502 Å)
Cite:Mechanism of Tc toxin action revealed in molecular detail.
Nature, 508, 2014
3J6B
  • Download 3j6b
  • View 3j6b
Molmil generated image of 3j6b
STRUCTURE OF THE YEAST MITOCHONDRIAL LARGE RIBOSOMAL SUBUNIT
Descriptor:21S ribosomal RNA, 54S ribosomal protein IMG1, mitochondrial, ...
Authors:Amunts, A., Brown, A., Bai, X.C., Llacer, J.L., Hussain, T., Emsley, P., Long, F., Murshudov, G., Scheres, S.H.W., Ramakrishnan, V.
Deposit date:2014-01-22
Release date:2014-04-09
Last modified:2014-12-17
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of the yeast mitochondrial large ribosomal subunit.
Science, 343, 2014
4CTG
  • Download 4ctg
  • View 4ctg
Molmil generated image of 4ctg
THE LIMITS OF STRUCTURAL PLASTICITY IN A PICORNAVIRUS CAPSID REVEALED BY A MASSIVELY EXPANDED EQUINE RHINITIS A VIRUS PARTICLE
Descriptor:P1
Authors:Bakker, S.E., Groppelli, E., Pearson, A.R., Stockley, P.G., Rowlands, D.J., Ranson, N.A.
Deposit date:2014-03-13
Release date:2014-05-21
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (17 Å)
Cite:Limits of Structural Plasticity in a Picornavirus Capsid Revealed by a Massively Expanded Equine Rhinitis a Virus Particle.
J.Virol., 88, 2014
4CTF
  • Download 4ctf
  • View 4ctf
Molmil generated image of 4ctf
THE LIMITS OF STRUCTURAL PLASTICITY IN A PICORNAVIRUS CAPSID REVEALED BY A MASSIVELY EXPANDED EQUINE RHINITIS A VIRUS PARTICLE
Descriptor:EQUINE RHINITIS A VIRUS, P1, VP1
Authors:Bakker, S.E., Groppelli, E., Pearson, A.R., Stockley, P.G., Rowlands, D.J., Ranson, N.A.
Deposit date:2014-03-13
Release date:2014-05-21
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (17 Å)
Cite:Limits of Structural Plasticity in a Picornavirus Capsid Revealed by a Massively Expanded Equine Rhinitis a Virus Particle.
J.Virol., 88, 2014
4NWR
  • Download 4nwr
  • View 4nwr
Molmil generated image of 4nwr
COMPUTATIONALLY DESIGNED TWO-COMPONENT SELF-ASSEMBLING TETRAHEDRAL CAGE T33-28
Descriptor:Macrophage migration inhibitory factor-like protein, integron gene cassette protein
Authors:McNamara, D.E., King, N.P., Bale, J.B., Sheffler, W., Baker, D., Yeates, T.O.
Deposit date:2013-12-06
Release date:2014-05-28
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Accurate design of co-assembling multi-component protein nanomaterials.
Nature, 510, 2014
3J6Y
  • Download 3j6y
  • View 3j6y
Molmil generated image of 3j6y
S. CEREVISIAE 80S RIBOSOME BOUND WITH TAURA SYNDROME VIRUS (TSV) IRES, 2 DEGREE ROTATION (CLASS I)
Descriptor:18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0, ...
Authors:Koh, C.S., Brilot, A.F., Grigorieff, N., Korostelev, A.A.
Deposit date:2014-04-16
Release date:2014-06-11
Last modified:2014-12-17
Method:ELECTRON MICROSCOPY (6.1 Å)
Cite:Taura syndrome virus IRES initiates translation by binding its tRNA-mRNA-like structural element in the ribosomal decoding center.
Proc.Natl.Acad.Sci.USA, 111, 2014
3J6X
  • Download 3j6x
  • View 3j6x
Molmil generated image of 3j6x
S. CEREVISIAE 80S RIBOSOME BOUND WITH TAURA SYNDROME VIRUS (TSV) IRES, 5 DEGREE ROTATION (CLASS II)
Descriptor:18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0, ...
Authors:Koh, C.S., Brilot, A.F., Grigorieff, N., Korostelev, A.A.
Deposit date:2014-04-16
Release date:2014-06-11
Last modified:2014-12-17
Method:ELECTRON MICROSCOPY (6.1 Å)
Cite:Taura syndrome virus IRES initiates translation by binding its tRNA-mRNA-like structural element in the ribosomal decoding center.
Proc.Natl.Acad.Sci.USA, 111, 2014
4V46
  • Download 4v46
  • View 4v46
Molmil generated image of 4v46
CRYSTAL STRUCTURE OF THE BAFF-BAFF-R COMPLEX
Descriptor:MAGNESIUM ION, Tumor necrosis factor ligand superfamily member 13B, Tumor necrosis factor receptor superfamily member 13C
Authors:Kim, H.M., Yu, K.S., Lee, M.E., Shin, D.R., Kim, Y.S., Paik, S.G., Yoo, O.J., Lee, H., Lee, J.-O.
Deposit date:2003-03-23
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystal structure of the BAFF-BAFF-R complex and its implications for receptor activation
NAT.STRUCT.BIOL., 10, 2003
4V47
  • Download 4v47
  • View 4v47
Molmil generated image of 4v47
REAL SPACE REFINED COORDINATES OF THE 30S AND 50S SUBUNITS FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE EF-G.GTP STATE OF E. COLI 70S RIBOSOME
Descriptor:16S RIBOSOMAL RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ...
Authors:Gao, H., Sengupta, J., Valle, M., Korostelev, A, Eswar, N., Stagg, S.M., Van Roey, P., Agrawal, R.K., Harvey, S.T., Sali, A., Chapman, M.S., Frank, J.
Deposit date:2003-05-06
Release date:2014-07-09
Last modified:2015-03-18
Method:ELECTRON MICROSCOPY (12.3 Å)
Cite:Study of the structural dynamics of the E. coli 70S ribosome using real space refinement
Cell(Cambridge,Mass.), 113, 2003
4V45
  • Download 4v45
  • View 4v45
Molmil generated image of 4v45
E. COLI (LACZ) BETA-GALACTOSIDASE-TRAPPED 2-F-GALACTOSYL-ENZYME INTERMEDIATE
Descriptor:2-FLUORO-2-DEOXY-BETA-D-GALACTOPYRANOSE, Beta-Galactosidase, MAGNESIUM ION, ...
Authors:Juers, D.H., McCarter, J.D., Withers, S.G., Matthews, B.W.
Deposit date:2001-09-13
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A Structural View of the Action of Escherichia Coli (Lacz) Beta-Galactosidase
Biochemistry, 40, 2001
4V48
  • Download 4v48
  • View 4v48
Molmil generated image of 4v48
REAL SPACE REFINED COORDINATES OF THE 30S AND 50S SUBUNITS FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE INITIATION-LIKE STATE OF E. COLI 70S RIBOSOME
Descriptor:16S RIBOSOMAL RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ...
Authors:Gao, H., Sengupta, J., Valle, M., Korostelev, A, Eswar, N., Stagg, S.M., Van Roey, P., Agrawal, R.K., Harvey, S.T., Sali, A., Chapman, M.S., Frank, J.
Deposit date:2003-05-06
Release date:2014-07-09
Last modified:2015-03-18
Method:ELECTRON MICROSCOPY (11.5 Å)
Cite:Study of the structural dynamics of the E. coli 70S ribosome using real space refinement
Cell(Cambridge,Mass.), 113, 2003
4V4A
  • Download 4v4a
  • View 4v4a
Molmil generated image of 4v4a
CRYSTAL STRUCTURE OF THE WILD TYPE RIBOSOME FROM E. COLI 70S RIBOSOME.
Descriptor:16S RIBOSOMAL RNA, 23S RIBOSOMAL RNA, 30S ribosomal protein S10, ...
Authors:Vila-Sanjurjo, A., Ridgeway, W.K., Seymaner, V., Zhang, W., Santoso, S., Yu, K., Cate, J.H.D.
Deposit date:2003-06-13
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (9.5 Å)
Cite:X-ray crystal structures of the WT and a hyper-accurate ribosome from Escherichia coli
Proc.Natl.Acad.Sci.USA, 100, 2003
4V42
  • Download 4v42
  • View 4v42
Molmil generated image of 4v42
CRYSTAL STRUCTURE OF THE RIBOSOME AT 5.5 A RESOLUTION.
Descriptor:30S 16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
Authors:Yusupov, M.M., Yusupova, G.Z., Baucom, A., Lieberman, K., Earnest, T.N., Cate, J.H.D., Noller, H.F.
Deposit date:2001-03-30
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (5.5 Å)
Cite:Crystal structure of the ribosome at 5.5 A resolution
Science, 292, 2001
4V43
  • Download 4v43
  • View 4v43
Molmil generated image of 4v43
STRUCTURAL AND MECHANISTIC BASIS FOR ALLOSTERY IN THE BACTERIAL CHAPERONIN GROEL
Descriptor:GROEL PROTEIN
Authors:Wang, J.
Deposit date:2002-01-02
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3.52 Å)
Cite:A GroEL/GroES complex structure revisited: the structure-based mechanism of ATP hydrolysis
To be Published
4V40
  • Download 4v40
  • View 4v40
Molmil generated image of 4v40
BETA-GALACTOSIDASE
Descriptor:BETA-GALACTOSIDASE, MAGNESIUM ION
Authors:Jacobson, R.H., Zhang, X., Dubose, R.F., Matthews, B.W.
Deposit date:1994-07-18
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Three-dimensional structure of beta-galactosidase from E. coli.
Nature, 369, 1994
4V41
  • Download 4v41
  • View 4v41
Molmil generated image of 4v41
E. COLI (LAC Z) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-MONOCLINIC)
Descriptor:BETA-GALACTOSIDASE, MAGNESIUM ION
Authors:Juers, D.H., Jacobson, R.H., Wigley, D., Zhang, X.J., Huber, R.E., Tronrud, D.E., Matthews, B.W.
Deposit date:2000-06-07
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:High resolution refinement of beta-galactosidase in a new crystal form reveals multiple metal-binding sites and provides a structural basis for alpha-complementation.
Protein Sci., 9, 2000
4V44
  • Download 4v44
  • View 4v44
Molmil generated image of 4v44
E. COLI (LACZ) BETA-GALACTOSIDASE IN COMPLEX WITH 2-F-LACTOSE
Descriptor:2-FLUORO-2-DEOXY-LACTOSE, Beta-Galactosidase, MAGNESIUM ION, ...
Authors:Juers, D.H., McCarter, J.D., Withers, S.G., Matthews, B.W.
Deposit date:2001-09-13
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A Structural View of the Action of Escherichia Coli (Lacz) Beta-Galactosidase
Biochemistry, 40, 2001
4V49
  • Download 4v49
  • View 4v49
Molmil generated image of 4v49
CRYSTAL STRUCTURE OF A STREPTOMYCIN DEPENDENT RIBOSOME FROM E. COLI 70S RIBOSOME.
Descriptor:16S RIBOSOMAL RNA, 23S RIBOSOMAL RNA, 30S ribosomal protein S10, ...
Authors:Vila-Sanjurjo, A., Ridgeway, W.K., Seymaner, V., Zhang, W., Santoso, S., Yu, K., Cate, J.H.D.
Deposit date:2003-06-13
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (8.7 Å)
Cite:X-ray Crystal Structures of the WT and a Hyper-Accurate Ribosome From Escherichia Coli
Proc.Natl.Acad.Sci.USA, 100, 2003
4V4C
  • Download 4v4c
  • View 4v4c
Molmil generated image of 4v4c
CRYSTAL STRUCTURE OF PYROGALLOL-PHLOROGLUCINOL TRANSHYDROXYLASE FROM PELOBACTER ACIDIGALLICI
Descriptor:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, ACETATE ION, CALCIUM ION, ...
Authors:Messerschmidt, A., Niessen, H., Abt, D., Einsle, O., Schink, B., Kroneck, P.M.H.
Deposit date:2004-06-02
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structure of pyrogallol-phloroglucinol transhydroxylase, an Mo enzyme capable of intermolecular hydroxyl transfer between phenols
PROC.NATL.ACAD.SCI.USA, 101, 2004
4V4B
  • Download 4v4b
  • View 4v4b
Molmil generated image of 4v4b
STRUCTURE OF THE RIBOSOMAL 80S-EEF2-SORDARIN COMPLEX FROM YEAST OBTAINED BY DOCKING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO A 11.7 A CRYO-EM MAP.
Descriptor:18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S11, ...
Authors:Spahn, C.M., Gomez-Lorenzo, M.G., Grassucci, R.A., Jorgensen, R., Andersen, G.R., Beckmann, R., Penczek, P.A., Ballesta, J.P.G., Frank, J.
Deposit date:2004-01-06
Release date:2014-07-09
Last modified:2015-03-18
Method:ELECTRON MICROSCOPY (11.7 Å)
Cite:Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation.
Embo J., 23, 2004
PDBj@FacebookPDBj@TwitterwwPDBwwPDB FoundationEM DataBank

Copyright © 2013-2017 Protein Data Bank Japan