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Mine: Large structure entries

3K1Q
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BACKBONE MODEL OF AN AQUAREOVIRUS VIRION BY CRYO-ELECTRON MICROSCOPY AND BIOINFORMATICS
Descriptor:VP1, the protein that forms the mRNA-capping machine, VP3A, the building block protein of inner shell, VP3B, the building block protein of inner shell, VP6A and VP6B, the clamping proteins, VP7: protector protein (outer shell), VP5: membrane-penetration protein (outer shell)
Authors:Cheng, L.P., Zhu, J., Hiu, W.H., Zhang, X.K., Honig, B., Fang, Q., Zhou, Z.H.
Deposit date:2009-09-28
Release date:2010-03-23
Last modified:2015-01-14
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Backbone Model of an Aquareovirus Virion by Cryo-Electron Microscopy and Bioinformatics
J.Mol.Biol., 397, 2010
3J3Y
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ATOMIC-LEVEL STRUCTURE OF THE ENTIRE HIV-1 CAPSID (186 HEXAMERS + 12 PENTAMERS)
Descriptor:HIV-1 capsid
Authors:Perilla, J.R., Zhao, G., Zhang, P., Schulten, K.J.
Deposit date:2013-05-06
Release date:2013-05-29
Last modified:2014-12-10
Method:ELECTRON MICROSCOPY
Cite:Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics.
Nature, 497, 2013
3J3Q
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ATOMIC-LEVEL STRUCTURE OF THE ENTIRE HIV-1 CAPSID
Descriptor:HIV-1 capsid
Authors:Perilla, J.R., Zhao, G., Zhang, P., Schulten, K.J.
Deposit date:2013-04-12
Release date:2013-05-29
Last modified:2014-12-10
Method:ELECTRON MICROSCOPY
Cite:Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics.
Nature, 497, 2013
4BP7
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ASYMMETRIC STRUCTURE OF A VIRUS-RECEPTOR COMPLEX
Descriptor:COAT PROTEIN
Authors:Dent, K.C., Thompson, R., Barker, A.M., Barr, J.N., Hiscox, J.A., Stockley, P.G., Ranson, N.A.
Deposit date:2013-07-17
Release date:2013-07-17
Last modified:2014-12-10
Method:ELECTRON MICROSCOPY (39 Å)
Cite:The Asymmetric Structure of an Icosahedral Virus Bound its Receptor Suggests a Mechanism for Genome Release.
Structure, 21, 2013
4BTS
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THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A
Descriptor:TRANSLATION INITIATION FACTOR EIF-1A FAMILY PROTEIN, 40S RIBOSOMAL PROTEIN RPS28E, 40S RIBOSOMAL PROTEIN S8, 40S RIBOSOMAL PROTEIN RPS7E, 40S RIBOSOMAL PROTEIN S3A, 40S RIBOSOMAL PROTEIN RPS26E, 40S RIBOSOMAL PROTEIN S27, 40S RIBOSOMAL PROTEIN RPS10E, 40S RIBOSOMAL PROTEIN RPS25E, 40S RIBOSOMAL PROTEIN RPS31E, 40S RIBOSOMAL PROTEIN SA, 40S RIBOSOMAL PROTEIN RPS3E, 40S RIBOSOMAL PROTEIN RPS9E, 40S RIBOSOMAL PROTEIN RPS2E, EIF1, 40S RIBOSOMAL PROTEIN RPS5E, 40S RIBOSOMAL PROTEIN RPS22E, 40S RIBOSOMAL PROTEIN RPS16E, 40S RIBOSOMAL PROTEIN RPS20E, 40S RIBOSOMAL PROTEIN RPS14E, 40S RIBOSOMAL PROTEIN S12, 40S RIBOSOMAL PROTEIN RPS18E, 40S RIBOSOMAL PROTEIN RPS29E, 40S RIBOSOMAL PROTEIN RPS13E, 40S RIBOSOMAL PROTEIN S24, 40S RIBOSOMAL PROTEIN RPS11E, 40S RIBOSOMAL PROTEIN RACK1, 40S RIBOSOMAL PROTEIN RPS15E, 40S RIBOSOMAL PROTEIN RPS19E, 40S RIBOSOMAL PROTEIN RPS12E, 40S RIBOSOMAL PROTEIN RPS17E, 40S RIBOSOMAL PROTEIN RPS4E, 40S RIBOSOMAL PROTEIN RPS30E, 40S RIBOSOMAL PROTEIN S6, 40S RIBOSOMAL PROTEIN RPS21E
Authors:Weisser, M., Voigts-Hoffmann, F., Rabl, J., Leibundgut, M., Ban, N.
Deposit date:2013-07-17
Release date:2013-07-17
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3.703 Å)
Cite:The Crystal Structure of the Eukaryotic 40S Ribosomal Subunit in Complex with Eif1 and Eif1A
Nat.Struct.Mol.Biol., 20, 2013
4O9Y
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CRYSTAL STRUCTURE OF TCDA1
Descriptor:TcdA1
Authors:Meusch, D., Gatsogiannis, C., Efremov, R.G., Lang, A.E., Hofnagel, O., Vetter, I.R., Aktories, K., Raunser, S.
Deposit date:2014-01-03
Release date:2014-02-26
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3.502 Å)
Cite:Mechanism of Tc toxin action revealed in molecular detail.
Nature, 508, 2014
3J6B
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STRUCTURE OF THE YEAST MITOCHONDRIAL LARGE RIBOSOMAL SUBUNIT
Descriptor:PROTEIN/RNA Complex
Authors:Amunts, A., Brown, A., Bai, X.C., Llacer, J.L., Hussain, T., Emsley, P., Long, F., Murshudov, G., Scheres, S.H.W., Ramakrishnan, V.
Deposit date:2014-01-22
Release date:2014-04-09
Last modified:2014-12-17
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of the yeast mitochondrial large ribosomal subunit.
Science, 343, 2014
4CTG
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THE LIMITS OF STRUCTURAL PLASTICITY IN A PICORNAVIRUS CAPSID REVEALED BY A MASSIVELY EXPANDED EQUINE RHINITIS A VIRUS PARTICLE
Descriptor:P1
Authors:Bakker, S.E., Groppelli, E., Pearson, A.R., Stockley, P.G., Rowlands, D.J., Ranson, N.A.
Deposit date:2014-05-21
Release date:2014-05-21
Last modified:2014-12-10
Method:ELECTRON MICROSCOPY (17 Å)
Cite:Limits of Structural Plasticity in a Picornavirus Capsid Revealed by a Massively Expanded Equine Rhinitis a Virus Particle.
J.Virol., 88, 2014
4CTF
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THE LIMITS OF STRUCTURAL PLASTICITY IN A PICORNAVIRUS CAPSID REVEALED BY A MASSIVELY EXPANDED EQUINE RHINITIS A VIRUS PARTICLE
Descriptor:VP1
Authors:Bakker, S.E., Groppelli, E., Pearson, A.R., Stockley, P.G., Rowlands, D.J., Ranson, N.A.
Deposit date:2014-04-02
Release date:2014-05-21
Last modified:2014-12-10
Method:ELECTRON MICROSCOPY (17 Å)
Cite:Limits of Structural Plasticity in a Picornavirus Capsid Revealed by a Massively Expanded Equine Rhinitis a Virus Particle.
J.Virol., 88, 2014
4NWR
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COMPUTATIONALLY DESIGNED TWO-COMPONENT SELF-ASSEMBLING TETRAHEDRAL CAGE T33-28
Descriptor:integron gene cassette protein, Macrophage migration inhibitory factor-like protein
Authors:McNamara, D.E., King, N.P., Bale, J.B., Sheffler, W., Baker, D., Yeates, T.O.
Deposit date:2013-12-06
Release date:2014-05-28
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Accurate design of co-assembling multi-component protein nanomaterials.
Nature, 510, 2014
3J6Y
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S. CEREVISIAE 80S RIBOSOME BOUND WITH TAURA SYNDROME VIRUS (TSV) IRES, 2 DEGREE ROTATION (CLASS I)
Descriptor:PROTEIN/RNA Complex
Authors:Koh, C.S., Brilot, A.F., Grigorieff, N., Korostelev, A.A.
Deposit date:2014-04-16
Release date:2014-06-11
Last modified:2014-12-17
Method:ELECTRON MICROSCOPY (6.1 Å)
Cite:Taura syndrome virus IRES initiates translation by binding its tRNA-mRNA-like structural element in the ribosomal decoding center.
Proc.Natl.Acad.Sci.USA, 111, 2014
3J6X
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S. CEREVISIAE 80S RIBOSOME BOUND WITH TAURA SYNDROME VIRUS (TSV) IRES, 5 DEGREE ROTATION (CLASS II)
Descriptor:PROTEIN/RNA Complex
Authors:Koh, C.S., Brilot, A.F., Grigorieff, N., Korostelev, A.A.
Deposit date:2014-04-16
Release date:2014-06-11
Last modified:2014-12-17
Method:ELECTRON MICROSCOPY (6.1 Å)
Cite:Taura syndrome virus IRES initiates translation by binding its tRNA-mRNA-like structural element in the ribosomal decoding center.
Proc.Natl.Acad.Sci.USA, 111, 2014
4V5D
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STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA, PAROMOMYCIN, ACYLATED A- AND P-SITE TRNAS, AND E-SITE TRNA.
Descriptor:70S Ribosome, paromycin
Authors:Voorhees, R.M., Weixlbaumer, A., Loakes, D., Kelley, A.C., Ramakrishnan, V.
Deposit date:2009-03-24
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Insights Into Substrate Stabilization from Snapshots of the Peptidyl Transferase Center of the Intact 70S Ribosome
Nat.Struct.Mol.Biol., 16, 2009
4V5Q
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THE CRYSTAL STRUCTURE OF EF-TU AND G24A-TRNA-TRP BOUND TO A NEAR- COGNATE CODON ON THE 70S RIBOSOME
Descriptor:70S ribosome
Authors:Schmeing, T.M., Voorhees, R.M., Ramakrishnan, V.
Deposit date:2010-12-07
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:How Mutations in tRNA Distant from the Anticodon Affect the Fidelity of Decoding.
Nat.Struct.Mol.Biol., 18, 2011
4V5R
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THE CRYSTAL STRUCTURE OF EF-TU AND TRP-TRNA-TRP BOUND TO A COGNATE CODON ON THE 70S RIBOSOME.
Descriptor:70S ribosome
Authors:Schmeing, T.M., Voorhees, R.M., Ramakrishnan, V.
Deposit date:2010-12-07
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:How Mutations in tRNA Distant from the Anticodon Affect the Fidelity of Decoding.
Nat.Struct.Mol.Biol., 18, 2011
4V5G
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THE CRYSTAL STRUCTURE OF THE 70S RIBOSOME BOUND TO EF-TU AND TRNA
Descriptor:70S ribosome, EF-Tu, tRNA
Authors:Schmeing, T.M., Voorhees, R.M., Ramakrishnan, V.
Deposit date:2009-09-01
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:The Crystal Structure of the Ribosome Bound to EF-TU and Aminoacyl-tRNA.
Science, 326, 2009
4V71
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E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN INTERMEDIATE PRE-TRANSLOCATION STATE (PRE2)
Descriptor:Ribosome
Authors:Blau, C., Bock, L.V., Schroder, G.F., Davydov, I., Fischer, N., Stark, H., Rodnina, M.V., Vaiana, A.C., Grubmuller, H.
Deposit date:2013-10-14
Release date:2014-07-09
Last modified:2014-12-10
Method:ELECTRON MICROSCOPY (20 Å)
Cite:Energy barriers and driving forces in tRNA translocation through the ribosome.
Nat.Struct.Mol.Biol., 20, 2013
4V72
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E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN HYBRID PRE-TRANSLOCATION STATE (PRE4)
Descriptor:Ribosome
Authors:Blau, C., Bock, L.V., Schroder, G.F., Davydov, I., Fischer, N., Stark, H., Rodnina, M.V., Vaiana, A.C., Grubmuller, H.
Deposit date:2013-10-14
Release date:2014-07-09
Last modified:2014-12-10
Method:ELECTRON MICROSCOPY (13 Å)
Cite:Energy barriers and driving forces in tRNA translocation through the ribosome.
Nat.Struct.Mol.Biol., 20, 2013
4V5M
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TRNA TRANLOCATION ON THE 70S RIBOSOME: THE PRE-TRANSLOCATIONAL TRANSLOCATION INTERMEDIATE TI(PRE)
Descriptor:Ribosome
Authors:Ratje, A.H., Loerke, J., Mikolajka, A., Bruenner, M., Hildebrand, P.W., Starosta, A.L., Doenhoefer, A., Connell, S.R., Fucini, P., Mielke, T., Whitford, P.C., Onuchic, J.N., Yu, Y., Sanbonmatsu, K.Y., Hartmann, R.K., Penczek, P.A., Wilson, D.N., Spahn, C.M.T.
Deposit date:2010-10-01
Release date:2014-07-09
Last modified:2014-12-10
Method:ELECTRON MICROSCOPY (7.8 Å)
Cite:Head Swivel on the Ribosome Facilitates Translocation by Means of Intra-Subunit tRNA Hybrid Sites.
Nature, 468, 2010
4V5I
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STRUCTURE OF THE PHAGE P2 BASEPLATE IN ITS ACTIVATED CONFORMATION WITH CA
Descriptor:ORF16, PUTATIVE RECEPTOR BINDING PROTEIN, ORF15
Authors:Sciara, G., Bebeacua, C., Bron, P., Tremblay, D., Ortiz-Lombardia, M., Lichiere, J., vanHeel, M., Campanacci, V., Moineau, S., Cambillau, C.
Deposit date:2010-02-05
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (5.464 Å)
Cite:Structure of Lactococcal Phage P2 Baseplate and its Mechanism of Activation.
Proc.Natl.Acad.Sci.USA, 107, 2010
4V9O
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CONTROL OF RIBOSOMAL SUBUNIT ROTATION BY ELONGATION FACTOR G
Descriptor:PROTEIN/RNA Complex
Authors:Pulk, A., Cate, J.H.D.
Deposit date:2013-05-03
Release date:2014-07-09
Last modified:2014-12-17
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Control of ribosomal subunit rotation by elongation factor G.
Science, 340, 2013
4V5J
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STRUCTURE OF THE 70S RIBOSOME BOUND TO RELEASE FACTOR 2 AND A SUBSTRATE ANALOG PROVIDES INSIGHTS INTO CATALYSIS OF PEPTIDE RELEASE
Descriptor:70S Ribosome
Authors:Jin, H., Kelley, A.C., Loakes, D., Ramakrishnan, V.
Deposit date:2010-03-24
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of the 70S Ribosome Bound to Release Factor 2 and a Substrate Analog Provides Insights Into Catalysis of Peptide Release.
Proc.Natl.Acad.Sci.USA, 107, 2010
4V5F
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THE STRUCTURE OF THE RIBOSOME WITH ELONGATION FACTOR G TRAPPED IN THE POST-TRANSLOCATIONAL STATE
Descriptor:Ribosome
Authors:Gao, Y.-G., Selmer, M., Dunham, C.M., Weixlbaumer, A., Kelley, A.C., Ramakrishnan, V.
Deposit date:2009-09-01
Release date:2014-07-09
Last modified:2015-10-07
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:The Structure of the Ribosome with Elongation Factor G Trapped in the Posttranslocational State.
Science, 326, 2009
4V5C
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STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA, PAROMOMYCIN, ACYLATED A-SITE TRNA, DEACYLATED P-SITE TRNA, AND E-SITE TRNA.
Descriptor:Ribosome
Authors:Voorhees, R.M., Weixlbaumer, A., Loakes, D., Kelley, A.C., Ramakrishnan, V.
Deposit date:2009-03-24
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Insights Into Substrate Stabilization from Snapshots of the Peptidyl Transferase Center of the Intact 70S Ribosome
Nat.Struct.Mol.Biol., 16, 2009
4V73
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E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN HYBRID PRE-TRANSLOCATION STATE (PRE5A)
Descriptor:Ribosome
Authors:Blau, C., Bock, L.V., Schroder, G.F., Davydov, I., Fischer, N., Stark, H., Rodnina, M.V., Vaiana, A.C., Grubmuller, H.
Deposit date:2013-10-14
Release date:2014-07-09
Last modified:2014-12-10
Method:ELECTRON MICROSCOPY (15 Å)
Cite:Energy barriers and driving forces in tRNA translocation through the ribosome.
Nat.Struct.Mol.Biol., 20, 2013
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