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Mine: Large structure entries

5XY3
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LARGE SUBUNIT OF TRICHOMONAS VAGINALIS RIBOSOME
Descriptor:25S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ...
Authors:Li, Z., Guo, Q., Zheng, L., Ji, Y., Xie, Y., Lai, D., Lun, Z., Suo, X., Gao, N.
Deposit date:2017-07-06
Release date:2017-08-30
Last modified:2017-09-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structures of the 80S ribosomes from human parasites Trichomonas vaginalis and Toxoplasma gondii
Cell Res., 2017
5XXB
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LARGE SUBUNIT OF TOXOPLASMA GONDII RIBOSOME
Descriptor:25S RNA, 5.8S RNA, 5S RNA, ...
Authors:Li, Z., Guo, Q., Zheng, L., Ji, Y., Xie, Y., Lai, D., Lun, Z., Suo, X., Gao, N.
Deposit date:2017-07-03
Release date:2017-08-30
Method:ELECTRON MICROSCOPY (3.17 Å)
Cite:Cryo-EM structures of the 80S ribosomes from human parasites Trichomonas vaginalis and Toxoplasma gondii
Cell Res., 2017
5XTI
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CRYO-EM ARCHITECTURE OF HUMAN RESPIRATORY CHAIN MEGACOMPLEX-I2III2IV2
Descriptor:(9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine, Acyl carrier protein, ...
Authors:Gu, J., Wu, M., Yang, M.
Deposit date:2017-06-19
Release date:2017-09-13
Method:ELECTRON MICROSCOPY (17.4 Å)
Cite:Architecture of Human Mitochondrial Respiratory Megacomplex I2III2IV2.
Cell, 2017
5XTH
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CRYO-EM STRUCTURE OF HUMAN RESPIRATORY SUPERCOMPLEX I1III2IV1
Descriptor:(9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine, Acyl carrier protein, ...
Authors:Gu, J., Wu, M., Yang, M.
Deposit date:2017-06-19
Release date:2017-09-13
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Architecture of Human Mitochondrial Respiratory Megacomplex I2III2IV2.
Cell, 2017
5W4K
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CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH KLEBSAZOLICIN AND BOUND TO MRNA AND A-, P- AND E-SITE TRNAS AT 2.7A RESOLUTION
Descriptor:16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Metelev, M., Osterman, I.A., Ghilarov, D., Khabibullina, N.F., Yakimov, A., Shabalin, K., Utkina, I., Travin, D.Y., Komarova, E.S., Serebryakova, M., Artamonova, T., Khodorkovskii, M., Konevega, A.L., Sergiev, P.V., Severinov, K., Polikanov, Y.S.
Deposit date:2017-06-12
Release date:2017-08-30
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Klebsazolicin inhibits 70S ribosome by obstructing the peptide exit tunnel.
Nat. Chem. Biol., 2017
5O61
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THE COMPLETE STRUCTURE OF THE MYCOBACTERIUM SMEGMATIS 70S RIBOSOME
Descriptor:16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Hentschel, J., Burnside, C., Mignot, I., Leibundgut, M., Boehringer, D., Ban, N.
Deposit date:2017-06-03
Release date:2017-07-12
Last modified:2017-07-19
Method:ELECTRON MICROSCOPY (3.31 Å)
Cite:The Complete Structure of the Mycobacterium smegmatis 70S Ribosome.
Cell Rep, 20, 2017
5VYC
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CRYSTAL STRUCTURE OF THE HUMAN 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH DENR-MCT-1.
Descriptor:40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, ...
Authors:Lomakin, I.B., Stolboushkina, E.A., Vaidya, A.T., Garber, M.B., Dmitriev, S.E., Steitz, T.A.
Deposit date:2017-05-24
Release date:2017-07-19
Last modified:2017-08-02
Method:X-RAY DIFFRACTION (6 Å)
Cite:Crystal Structure of the Human Ribosome in Complex with DENR-MCT-1.
Cell Rep, 20, 2017
5O2R
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CRYO-EM STRUCTURE OF THE PROLINE-RICH ANTIMICROBIAL PEPTIDE API137 BOUND TO THE TERMINATING RIBOSOME
Descriptor:16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Graf, M., Berninghausen, O., Beckmann, R., Wilson, D.N.
Deposit date:2017-05-22
Release date:2017-07-26
Last modified:2017-09-20
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:An antimicrobial peptide that inhibits translation by trapping release factors on the ribosome.
Nat. Struct. Mol. Biol., 24, 2017
5NWY
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2.9 A CRYO-EM STRUCTURE OF VEMP-STALLED RIBOSOME-NASCENT CHAIN COMPLEX
Descriptor:16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Su, T., Cheng, J., Sohmen, D., Hedman, R., Berninghausen, O., von Heijne, G., Wilson, D.N., Beckmann, R.
Deposit date:2017-05-08
Release date:2017-07-19
Method:ELECTRON MICROSCOPY (2.93 Å)
Cite:The force-sensing peptide VemP employs extreme compaction and secondary structure formation to induce ribosomal stalling.
Elife, 6, 2017
5VP2
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CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MADUMYCIN II AND BOUND TO MRNA AND A-, P- AND E-SITE TRNAS AT 2.8A RESOLUTION
Descriptor:16S ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Osterman, I.A., Khabibullina, N.F., Komarova, E.S., Kasatsky, P., Kartsev, V.G., Bogdanov, A.A., Dontsova, O.A., Konevega, A.L., Sergiev, P.V., Polikanov, Y.S.
Deposit date:2017-05-04
Release date:2017-06-28
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Madumycin II inhibits peptide bond formation by forcing the peptidyl transferase center into an inactive state.
Nucleic Acids Res., 45, 2017
5XJC
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CRYO-EM STRUCTURE OF THE HUMAN SPLICEOSOME JUST PRIOR TO EXON LIGATION AT 3.6 ANGSTROM
Descriptor:116 kDa U5 small nuclear ribonucleoprotein component, ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Zhang, X., Yan, C., Hang, J., Finci, I.L., Lei, J., Shi, Y.
Deposit date:2017-04-30
Release date:2017-07-05
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:An Atomic Structure of the Human Spliceosome
Cell, 169, 2017
5VKU
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AN ATOMIC STRUCTURE OF THE HUMAN CYTOMEGALOVIRUS (HCMV) CAPSID WITH ITS SECURING LAYER OF PP150 TEGUMENT PROTEIN
Descriptor:Major capsid protein, Small capsomere-interacting protein, Tegument protein pp150, ...
Authors:Yu, X., Jih, J., Jiang, J., Zhou, H.
Deposit date:2017-04-24
Release date:2017-06-28
Last modified:2017-09-13
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Atomic structure of the human cytomegalovirus capsid with its securing tegument layer of pp150.
Science, 356, 2017
5NRL
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STRUCTURE OF A PRE-CATALYTIC SPLICEOSOME
Descriptor:13 kDa ribonucleoprotein-associated protein, 23 kDa U4/U6.U5 small nuclear ribonucleoprotein component, 66 kDa U4/U6.U5 small nuclear ribonucleoprotein component, ...
Authors:Plaschka, C., Lin, P.-C., Nagai, K.
Deposit date:2017-04-24
Release date:2017-05-31
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (7.2 Å)
Cite:Structure of a pre-catalytic spliceosome.
Nature, 546, 2017
5NP6
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70S STRUCTURE PRIOR TO BYPASSING
Descriptor:16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Agirrezabala, X., Samatova, E., Klimova, M., Zamora, M., Gil-Carton, D., Rodnina, M., Valle, M.
Deposit date:2017-04-13
Release date:2017-06-14
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Ribosome rearrangements at the onset of translational bypassing.
Sci Adv, 3, 2017
5NMB
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STRUCTURE-ACTIVITY RELATIONSHIP STUDY OF VITAMIN D ANALOGS WITH OXOLANE GROUP IN THEIR SIDE CHAIN
Descriptor:(1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-7~{a}-methyl-1-[(1~{S})-1-[(2~{S},5~{R})-5-(2-oxidanylpropan-2-yl)oxolan-2-yl]ethyl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol, Nuclear receptor coactivator 1, Vitamin D3 receptor A
Authors:Rochel, N., Belorusova, A.Y.
Deposit date:2017-04-05
Release date:2017-05-24
Last modified:2017-09-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure-activity relationship study of vitamin D analogs with oxolane group in their side chain.
Eur J Med Chem, 134, 2017
5NJT
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STRUCTURE OF THE BACILLUS SUBTILIS HIBERNATING 100S RIBOSOME REVEALS THE BASIS FOR 70S DIMERIZATION.
Descriptor:16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Beckert, B., Abdelshahid, M., Schaefer, H., Steinchen, W., Arenz, S., Berninghausen, O., Beckmann, R., Bange, G., Turgay, K., Wilson, D.N.
Deposit date:2017-03-29
Release date:2017-06-14
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
EMBO J., 36, 2017
5V93
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CRYO-EM STRUCTURE OF THE 70S RIBOSOME FROM MYCOBACTERIUM TUBERCULOSIS BOUND WITH CAPREOMYCIN
Descriptor:16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Yang, K., Chang, J.-Y., Cui, Z., Li, X., Meng, R., Duan, L., Thongchol, J., Jakana, J., Huwe, C., Sacchettini, J., Zhang, J.
Deposit date:2017-03-22
Release date:2017-09-20
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural insights into species-specific features of the ribosome from the human pathogen Mycobacterium tuberculosis
Nucleic Acids Res., 2017
5V74
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STRUCTURE OF THE INTACT HALIANGIUM OCHRACEUM MICROCOMPARTMENT SHELL
Descriptor:Ethanolamine utilization protein EutN/carboxysome structural protein Ccml, Microcompartments protein
Authors:Sutter, M., Kerfeld, C.A.
Deposit date:2017-03-17
Release date:2017-06-21
Last modified:2017-07-05
Method:X-RAY DIFFRACTION (3.51015467477 Å)
Cite:Assembly principles and structure of a 6.5-MDa bacterial microcompartment shell.
Science, 356, 2017
5ND8
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HIBERNATING RIBOSOME FROM STAPHYLOCOCCUS AUREUS (UNROTATED STATE)
Descriptor:16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Khusainov, I., Vicens, Q., Ayupov, R., Usachev, K., Myasnikov, A., Simonetti, A., Validov, S., Kieffer, B., Yusupova, G., Yusupov, M., Hashem, Y.
Deposit date:2017-03-07
Release date:2017-06-28
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structures and dynamics of hibernating ribosomes from Staphylococcus aureus mediated by intermolecular interactions of HPF.
EMBO J., 36, 2017
5ND9
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HIBERNATING RIBOSOME FROM STAPHYLOCOCCUS AUREUS (ROTATED STATE)
Descriptor:16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Khusainov, I., Vicens, Q., Ayupov, R., Usachev, K., Myasnikov, A., Simonetti, A., Validov, S., Kieffer, B., Yusupova, G., Yusupov, M., Hashem, Y.
Deposit date:2017-03-07
Release date:2017-06-28
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structures and dynamics of hibernating ribosomes from Staphylococcus aureus mediated by intermolecular interactions of HPF.
EMBO J., 36, 2017
5NCO
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QUATERNARY COMPLEX BETWEEN SRP, SR, AND SECYEG BOUND TO THE TRANSLATING RIBOSOME
Descriptor:23S rRNA, 4.5S SRP RNA (Ffs), 50S ribosomal protein L10, ...
Authors:Jomaa, A., Hwang Fu, Y., Boerhinger, D., Leibundgut, M., Shan, S.o., Ban, N.
Deposit date:2017-03-06
Release date:2017-05-24
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Structure of the quaternary complex between SRP, SR, and translocon bound to the translating ribosome.
Nat Commun, 8, 2017
5X8P
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STRUCTURE OF THE 70S CHLOROPLAST RIBOSOME FROM SPINACH
Descriptor:16S rRNA, 23S rRNA, 30S ribosomal protein S1, ...
Authors:Ahmed, T., Shi, J., Bhushan, S.
Deposit date:2017-03-03
Release date:2017-06-14
Last modified:2017-09-13
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Unique localization of the plastid-specific ribosomal proteins in the chloroplast ribosome small subunit provides mechanistic insights into the chloroplastic translation
Nucleic Acids Res., 45, 2017
5UYK
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70S RIBOSOME BOUND WITH COGNATE TERNARY COMPLEX NOT BASE-PAIRED TO A SITE CODON (STRUCTURE I)
Descriptor:16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Loveland, A.B., Demo, G., Grigorieff, N., Korostelev, A.A.
Deposit date:2017-02-24
Release date:2017-06-07
Last modified:2017-09-13
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Ensemble cryo-EM elucidates the mechanism of translation fidelity
Nature, 546, 2017
5UYL
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70S RIBOSOME BOUND WITH COGNATE TERNARY COMPLEX BASE-PAIRED TO A SITE CODON (STRUCTURE II)
Descriptor:16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Loveland, A.B., Demo, G., Grigorieff, N., Korostelev, A.A.
Deposit date:2017-02-24
Release date:2017-06-14
Last modified:2017-09-13
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Ensemble cryo-EM elucidates the mechanism of translation fidelity.
Nature, 546, 2017
5UYQ
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70S RIBOSOME BOUND WITH NEAR-COGNATE TERNARY COMPLEX BASE-PAIRED TO A SITE CODON, CLOSED 30S (STRUCTURE III-NC)
Descriptor:16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Loveland, A.B., Demo, G., Grigorieff, N., Korostelev, A.A.
Deposit date:2017-02-24
Release date:2017-06-07
Last modified:2017-09-13
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Ensemble cryo-EM elucidates the mechanism of translation fidelity
Nature, 546, 2017
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