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Structure paper

タイトルGroup deposition of SARS-CoV-2 NSP3 Macrodomain in complex with inhibitors from the ASAP AViDD centre
ジャーナル・号・ページTo Be Published
掲載日2024年1月23日 (構造データの登録日)
著者Aschenbrenner, J.C. / Fearon, D. / Tomlinson, C.W.E. / Marples, P.G. / Fairhead, M. / Balcomb, B.H. / Chandran, A.V. / Godoy, A.S. / Koekemoer, L. / Lithgo, R.M. ...Aschenbrenner, J.C. / Fearon, D. / Tomlinson, C.W.E. / Marples, P.G. / Fairhead, M. / Balcomb, B.H. / Chandran, A.V. / Godoy, A.S. / Koekemoer, L. / Lithgo, R.M. / Ni, X. / Thompson, W. / Wang, S. / Wild, C. / Williams, E.P. / Winokan, M. / Walsh, M.A. / von Delft, F.
リンクPubMedで検索
手法X線回折
解像度1.05 - 1.89 Å
構造データ

PDB-7gyy:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000006-001
手法: X-RAY DIFFRACTION / 解像度: 1.2 Å

PDB-7gyz:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000035-001
手法: X-RAY DIFFRACTION / 解像度: 1.123 Å

PDB-7gz0:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000051-001
手法: X-RAY DIFFRACTION / 解像度: 1.155 Å

PDB-7gz1:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000061-001
手法: X-RAY DIFFRACTION / 解像度: 1.171 Å

PDB-7gz2:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000072-001
手法: X-RAY DIFFRACTION / 解像度: 1.137 Å

PDB-7gz3:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000090-001
手法: X-RAY DIFFRACTION / 解像度: 1.06 Å

PDB-7gz4:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000018-001
手法: X-RAY DIFFRACTION / 解像度: 1.119 Å

PDB-7gz5:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000050-002
手法: X-RAY DIFFRACTION / 解像度: 1.05 Å

PDB-7gz6:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000243-001
手法: X-RAY DIFFRACTION / 解像度: 1.15 Å

PDB-7gz7:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000131-001
手法: X-RAY DIFFRACTION / 解像度: 1.293 Å

PDB-7gz8:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000453-001
手法: X-RAY DIFFRACTION / 解像度: 1.15 Å

PDB-7gz9:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000462-001
手法: X-RAY DIFFRACTION / 解像度: 1.16 Å

PDB-7gza:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000479-001
手法: X-RAY DIFFRACTION / 解像度: 1.14 Å

PDB-7gzb:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000495-001
手法: X-RAY DIFFRACTION / 解像度: 1.16 Å

PDB-7gzc:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000588-001
手法: X-RAY DIFFRACTION / 解像度: 1.185 Å

PDB-7gzd:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000593-001
手法: X-RAY DIFFRACTION / 解像度: 1.16 Å

PDB-7gze:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000601-001
手法: X-RAY DIFFRACTION / 解像度: 1.14 Å

PDB-7gzf:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000605-001
手法: X-RAY DIFFRACTION / 解像度: 1.18 Å

PDB-7gzg:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000620-001
手法: X-RAY DIFFRACTION / 解像度: 1.251 Å

PDB-7gzh:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000670-001
手法: X-RAY DIFFRACTION / 解像度: 1.25 Å

PDB-7gzi:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000753-001
手法: X-RAY DIFFRACTION / 解像度: 1.3 Å

PDB-7gzj:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000789-001
手法: X-RAY DIFFRACTION / 解像度: 1.475 Å

PDB-7gzk:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000877-001
手法: X-RAY DIFFRACTION / 解像度: 1.163 Å

PDB-7gzl:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0008304-001
手法: X-RAY DIFFRACTION / 解像度: 1.16 Å

PDB-7gzm:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0008324-001
手法: X-RAY DIFFRACTION / 解像度: 1.16 Å

PDB-7gzn:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0008351-001
手法: X-RAY DIFFRACTION / 解像度: 1.26 Å

PDB-7gzo:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0008338-001
手法: X-RAY DIFFRACTION / 解像度: 1.2 Å

PDB-7gzq:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0008379-001
手法: X-RAY DIFFRACTION / 解像度: 1.43 Å

PDB-7gzr:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0008273-001
手法: X-RAY DIFFRACTION / 解像度: 1.455 Å

PDB-7gzs:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0008340-001
手法: X-RAY DIFFRACTION / 解像度: 1.85 Å

PDB-7gzt:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0008348-001
手法: X-RAY DIFFRACTION / 解像度: 1.89 Å

PDB-7gzu:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0008674-001
手法: X-RAY DIFFRACTION / 解像度: 1.19 Å

PDB-7gzv:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0012336-001
手法: X-RAY DIFFRACTION / 解像度: 1.18 Å

PDB-7gzw:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0012338-001
手法: X-RAY DIFFRACTION / 解像度: 1.15 Å

PDB-7gzx:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0011176-001
手法: X-RAY DIFFRACTION / 解像度: 1.15 Å

PDB-7gzy:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0011144-001
手法: X-RAY DIFFRACTION / 解像度: 1.15 Å

PDB-7gzz:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0011184-001
手法: X-RAY DIFFRACTION / 解像度: 1.166 Å

PDB-7h00:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0011221-001
手法: X-RAY DIFFRACTION / 解像度: 1.18 Å

PDB-7h01:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0011192-001
手法: X-RAY DIFFRACTION / 解像度: 1.38 Å

PDB-7h02:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000455-001
手法: X-RAY DIFFRACTION / 解像度: 1.15 Å

PDB-7h03:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000452-001
手法: X-RAY DIFFRACTION / 解像度: 1.22 Å

PDB-7h04:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000453-001
手法: X-RAY DIFFRACTION / 解像度: 1.15 Å

PDB-7h05:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0008287-001
手法: X-RAY DIFFRACTION / 解像度: 1.15 Å

PDB-7h06:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0010739-001
手法: X-RAY DIFFRACTION / 解像度: 1.24 Å

PDB-7h07:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0010744-001
手法: X-RAY DIFFRACTION / 解像度: 1.19 Å

PDB-7h08:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0012346-001
手法: X-RAY DIFFRACTION / 解像度: 1.3 Å

PDB-7h09:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0011177-001
手法: X-RAY DIFFRACTION / 解像度: 1.39 Å

PDB-7h0a:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0008485-001
手法: X-RAY DIFFRACTION / 解像度: 1.16 Å

PDB-7h0b:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0010716-001
手法: X-RAY DIFFRACTION / 解像度: 1.5 Å

PDB-7h0c:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0012349-001
手法: X-RAY DIFFRACTION / 解像度: 1.429 Å

PDB-7h0d:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0011446-001
手法: X-RAY DIFFRACTION / 解像度: 1.298 Å

PDB-7h0e:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0011153-001
手法: X-RAY DIFFRACTION / 解像度: 1.37 Å

PDB-7h0f:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0011207-001
手法: X-RAY DIFFRACTION / 解像度: 1.26 Å

PDB-7h0g:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0011210-001
手法: X-RAY DIFFRACTION / 解像度: 1.18 Å

PDB-7h0h:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0011204-001
手法: X-RAY DIFFRACTION / 解像度: 1.31 Å

PDB-7h0i:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0012317-001
手法: X-RAY DIFFRACTION / 解像度: 1.19 Å

PDB-7h0j:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0012318-001
手法: X-RAY DIFFRACTION / 解像度: 1.15 Å

PDB-7h0k:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0011076-001
手法: X-RAY DIFFRACTION / 解像度: 1.3 Å

PDB-7h0l:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0011436-001
手法: X-RAY DIFFRACTION / 解像度: 1.59 Å

PDB-7h0m:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0011428-001
手法: X-RAY DIFFRACTION / 解像度: 1.46 Å

PDB-7h0n:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0011215-001
手法: X-RAY DIFFRACTION / 解像度: 1.41 Å

PDB-7h0o:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0012310-001
手法: X-RAY DIFFRACTION / 解像度: 1.18 Å

PDB-7h0p:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0008445-001
手法: X-RAY DIFFRACTION / 解像度: 1.31 Å

PDB-7h0q:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0013821-001
手法: X-RAY DIFFRACTION / 解像度: 1.15 Å

PDB-7h0r:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0013730-001
手法: X-RAY DIFFRACTION / 解像度: 1.21 Å

PDB-7h0s:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0013769-001
手法: X-RAY DIFFRACTION / 解像度: 1.29 Å

PDB-7h0t:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0013772-001
手法: X-RAY DIFFRACTION / 解像度: 1.66 Å

PDB-7h0u:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0013775-001
手法: X-RAY DIFFRACTION / 解像度: 1.47 Å

PDB-7h0v:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0013318-001
手法: X-RAY DIFFRACTION / 解像度: 1.28 Å

PDB-7h0w:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0013738-001
手法: X-RAY DIFFRACTION / 解像度: 1.158 Å

PDB-7h0x:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0013255-001
手法: X-RAY DIFFRACTION / 解像度: 1.3 Å

PDB-7h0y:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0013258-001
手法: X-RAY DIFFRACTION / 解像度: 1.51 Å

PDB-7h0z:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0013269-001
手法: X-RAY DIFFRACTION / 解像度: 1.23 Å

PDB-7h10:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0013259-001
手法: X-RAY DIFFRACTION / 解像度: 1.18 Å

PDB-7h11:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0013392-001
手法: X-RAY DIFFRACTION / 解像度: 1.3 Å

PDB-7h12:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0013388-001
手法: X-RAY DIFFRACTION / 解像度: 1.15 Å

PDB-7h13:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0013385-001
手法: X-RAY DIFFRACTION / 解像度: 1.22 Å

PDB-7h14:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0013383-001
手法: X-RAY DIFFRACTION / 解像度: 1.15 Å

PDB-7h15:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0013387-001
手法: X-RAY DIFFRACTION / 解像度: 1.18 Å

PDB-7h16:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0015776-001
手法: X-RAY DIFFRACTION / 解像度: 1.18 Å

PDB-7h17:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0013389-001
手法: X-RAY DIFFRACTION / 解像度: 1.19 Å

PDB-7h18:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0013390-001
手法: X-RAY DIFFRACTION / 解像度: 1.166 Å

PDB-7h19:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0013827-001
手法: X-RAY DIFFRACTION / 解像度: 1.15 Å

PDB-7h1a:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0013833-001
手法: X-RAY DIFFRACTION / 解像度: 1.15 Å

PDB-7h1b:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0013839-001
手法: X-RAY DIFFRACTION / 解像度: 1.47 Å

PDB-7h1c:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0014597-001
手法: X-RAY DIFFRACTION / 解像度: 1.44 Å

PDB-7h1d:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0011198-001
手法: X-RAY DIFFRACTION / 解像度: 1.19 Å

PDB-7h1e:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0008674-001
手法: X-RAY DIFFRACTION / 解像度: 1.14 Å

PDB-7h1f:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0015381-001
手法: X-RAY DIFFRACTION / 解像度: 1.15 Å

PDB-7h1g:
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0012329-001
手法: X-RAY DIFFRACTION / 解像度: 1.24 Å

化合物

PDB-1ajf:
SOLUTION STRUCTURE OF THE P5B STEM LOOP FROM A GROUP I INTRON COMPLEXED WITH COBALT (III) HEXAMMINE, NMR, MINIMIZED AVERAGE STRUCTURE

ChemComp-HOH:
WATER

PDB-1ai6:
PENICILLIN ACYLASE WITH P-HYDROXYPHENYLACETIC ACID

PDB-1ai7:
PENICILLIN ACYLASE COMPLEXED WITH PHENOL

PDB-1ajg:
CARBONMONOXY MYOGLOBIN AT 40 K

PDB-1ajh:
PHOTOPRODUCT OF CARBONMONOXY MYOGLOBIN AT 40 K

PDB-1aji:
Unknown entry

PDB-1ajj:
LDL RECEPTOR LIGAND-BINDING MODULE 5, CALCIUM-COORDINATING

PDB-1ajk:
CIRCULARLY PERMUTED (1-3,1-4)-BETA-D-GLUCAN 4-GLUCANOHYDROLASE CPA16M-84

PDB-1ajl:
FIVE-NUCLEOTIDE BULGE LOOP FROM TETRAHYMENA THERMOPHILA GROUP I INTRON

ChemComp-QL6:
3-{[4-(cyclopropylcarbamamido)benzamido]methyl}-1H-indole-2-carboxylic acid

PDB-1ajw:
STRUCTURE OF RHOGDI: A C-TERMINAL BINDING DOMAIN TARGETS AN N-TERMINAL INHIBITORY PEPTIDE TO GTPASES, NMR, 20 STRUCTURES

PDB-1ajx:
HIV-1 PROTEASE IN COMPLEX WITH THE CYCLIC UREA INHIBITOR AHA001

PDB-1akd:
CYTOCHROME P450CAM FROM PSEUDOMONAS PUTIDA, COMPLEXED WITH 1S-CAMPHOR

PDB-1ake:
STRUCTURE OF THE COMPLEX BETWEEN ADENYLATE KINASE FROM ESCHERICHIA COLI AND THE INHIBITOR AP5A REFINED AT 1.9 ANGSTROMS RESOLUTION: A MODEL FOR A CATALYTIC TRANSITION STATE

PDB-1akf:
Unknown entry

PDB-1akg:
ALPHA-CONOTOXIN PNIB FROM CONUS PENNACEUS

PDB-1akh:
MAT A1/ALPHA2/DNA TERNARY COMPLEX

PDB-1aki:
THE STRUCTURE OF THE ORTHORHOMBIC FORM OF HEN EGG-WHITE LYSOZYME AT 1.5 ANGSTROMS RESOLUTION

PDB-1akp:
SEQUENTIAL 1H,13C AND 15N NMR ASSIGNMENTS AND SOLUTION CONFORMATION OF APOKEDARCIDIN

PDB-1akq:
D95A OXIDIZED FLAVODOXIN MUTANT FROM D. VULGARIS

PDB-1akr:
G61A OXIDIZED FLAVODOXIN MUTANT

PDB-1aks:
CRYSTAL STRUCTURE OF THE FIRST ACTIVE AUTOLYSATE FORM OF THE PORCINE ALPHA TRYPSIN

PDB-1ai8:
HUMAN ALPHA-THROMBIN TERNARY COMPLEX WITH THE EXOSITE INHIBITOR HIRUGEN AND ACTIVE SITE INHIBITOR PHCH2OCO-D-DPA-PRO-BOROMPG

PDB-1ai9:
CANDIDA ALBICANS DIHYDROFOLATE REDUCTASE

PDB-1akt:
G61N OXIDIZED FLAVODOXIN MUTANT

PDB-1aku:
D95A HYDROQUINONE FLAVODOXIN MUTANT FROM D. VULGARIS

PDB-1akv:
D95A SEMIQUINONE FLAVODOXIN MUTANT FROM D. VULGARIS

PDB-1akz:
HUMAN URACIL-DNA GLYCOSYLASE

PDB-1ak0:
P1 NUCLEASE IN COMPLEX WITH A SUBSTRATE ANALOG

PDB-1ak1:
FERROCHELATASE FROM BACILLUS SUBTILIS

PDB-1ak2:
ADENYLATE KINASE ISOENZYME-2


PDB 未公開エントリ

PDB-1ak3: Unknown entry

PDB-1ak4:
HUMAN CYCLOPHILIN A BOUND TO THE AMINO-TERMINAL DOMAIN OF HIV-1 CAPSID

PDB-1ak5:
INOSINE MONOPHOSPHATE DEHYDROGENASE (IMPDH) FROM TRITRICHOMONAS FOETUS

PDB-1ak6:
DESTRIN, NMR, MINIMIZED AVERAGE STRUCTURE

PDB-1ak7:
DESTRIN, NMR, 20 STRUCTURES

PDB-1alq:
CIRCULARLY PERMUTED BETA-LACTAMASE FROM STAPHYLOCOCCUS AUREUS PC1


PDB 未公開エントリ

PDB-1alr: Unknown entry

PDB-1als:
Unknown entry

PDB-1aly:
CRYSTAL STRUCTURE OF HUMAN CD40 LIGAND

ChemComp-MES:
2-(N-MORPHOLINO)-ETHANESULFONIC ACID / 2-モルホリノエタンスルホン酸 / pH緩衝剤*YM

PDB-1al0:
PROCAPSID OF BACTERIOPHAGE PHIX174

PDB-1al1:
CRYSTAL STRUCTURE OF ALPHA1: IMPLICATIONS FOR PROTEIN DESIGN

PDB-1al4:
GRAMICIDIN D FROM BACILLUS BREVIS (N-PROPANOL SOLVATE)

PDB-1al5:
A-TRACT RNA DODECAMER, NMR, 12 STRUCTURES

PDB-1al6:
CHICKEN CITRATE SYNTHASE COMPLEX WITH N-HYDROXYAMIDO-COA AND OXALOACETATE

PDB-1al7:
THREE-DIMENSIONAL STRUCTURES OF GLYCOLATE OXIDASE WITH BOUND ACTIVE-SITE INHIBITORS

PDB-1amd:
NMR STUDY OF DNA (5'-D(*TP*GP*TP*AP*CP*A)-3') SELF-COMPLEMENTARY DUPLEX COMPLEXED WITH A BIS-DAUNORUBICIN WP-652, MINIMIZED AVERAGE STRUCTURE

PDB-1ame:
CRYSTAL STRUCTURE OF TYPE III ANTIFREEZE PROTEIN AT 4 C

PDB-1aip:
EF-TU EF-TS COMPLEX FROM THERMUS THERMOPHILUS

PDB-1amf:
CRYSTAL STRUCTURE OF MODA, A MOLYBDATE TRANSPORT PROTEIN, COMPLEXED WITH MOLYBDATE

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER / ジエチレングリコ-ル


PDB 未公開エントリ

PDB-1amg: Unknown entry

PDB-1ami:
STERIC AND CONFORMATIONAL FEATURES OF THE ACONITASE MECHANISM

PDB-1amj:
STERIC AND CONFORMATIONAL FEATURES OF THE ACONITASE MECHANISM

PDB-1amk:
LEISHMANIA MEXICANA TRIOSE PHOSPHATE ISOMERASE

PDB-1aml:
THE ALZHEIMER`S DISEASE AMYLOID A4 PEPTIDE (RESIDUES 1-40)

PDB-1amp:
CRYSTAL STRUCTURE OF AEROMONAS PROTEOLYTICA AMINOPEPTIDASE: A PROTOTYPICAL MEMBER OF THE CO-CATALYTIC ZINC ENZYME FAMILY

PDB-1amq:
X-RAY CRYSTALLOGRAPHIC STUDY OF PYRIDOXAMINE 5'-PHOSPHATE-TYPE ASPARTATE AMINOTRANSFERASES FROM ESCHERICHIA COLI IN THREE FORMS

PDB-1amr:
X-RAY CRYSTALLOGRAPHIC STUDY OF PYRIDOXAMINE 5'-PHOSPHATE-TYPE ASPARTATE AMINOTRANSFERASES FROM ESCHERICHIA COLI IN THREE FORMS

PDB-1ams:
X-RAY CRYSTALLOGRAPHIC STUDY OF PYRIDOXAMINE 5'-PHOSPHATE-TYPE ASPARTATE AMINOTRANSFERASES FROM ESCHERICHIA COLI IN THREE FORMS

PDB-1amt:
Crystal structure of alamethicin at 1.5 angstrom resolution

PDB-1amu:
PHENYLALANINE ACTIVATING DOMAIN OF GRAMICIDIN SYNTHETASE 1 IN A COMPLEX WITH AMP AND PHENYLALANINE


PDB 未公開エントリ

PDB-1amv: Unknown entry

PDB-1amw:
ADP BINDING SITE IN THE HSP90 MOLECULAR CHAPERONE

PDB-1ani:
ALKALINE PHOSPHATASE (D153H, K328H)

PDB-1anj:
ALKALINE PHOSPHATASE (K328H)

PDB-1ank:
THE CLOSED CONFORMATION OF A HIGHLY FLEXIBLE PROTEIN: THE STRUCTURE OF E. COLI ADENYLATE KINASE WITH BOUND AMP AND AMPPNP

PDB-1anl:
Unknown entry

PDB-1anp:
SOLUTION CONFORMATION OF AN ATRIAL NATRIURETIC PEPTIDE VARIANT SELECTIVE FOR THE TYPE-A RECEPTOR

PDB-1anq:
Unknown entry

PDB-1anr:
CIS-ACTING RNA REGULATORY ELEMENT (HIV-1 TAR), NMR, 20 STRUCTURES

PDB-1ans:
THREE-DIMENSIONAL STRUCTURE IN SOLUTION OF NEUROTOXIN III FROM THE SEA ANEMONE ANEMONIA SULCATA

PDB-1anv:
ADENOVIRUS 5 DBP/URANYL FLUORIDE SOAK

PDB-1anw:
THE EFFECT OF METAL BINDING ON THE STRUCTURE OF ANNEXIN V AND IMPLICATIONS FOR MEMBRANE BINDING

PDB-1anx:
THE CRYSTAL STRUCTURE OF A NEW HIGH-CALCIUM FORM OF ANNEXIN V

PDB-1anu:
COHESIN-2 DOMAIN OF THE CELLULOSOME FROM CLOSTRIDIUM THERMOCELLUM

PDB-1any:
Unknown entry

PDB-1anz:
Unknown entry

PDB-1an0:
CDC42HS-GDP COMPLEX

PDB-1an2:
RECOGNITION BY MAX OF ITS COGNATE DNA THROUGH A DIMERIC B/HLH/Z DOMAIN

PDB-1an3:
Unknown entry

PDB-1an4:
STRUCTURE AND FUNCTION OF THE B/HLH/Z DOMAIN OF USF

PDB-1an5:
E. COLI THYMIDYLATE SYNTHASE IN COMPLEX WITH CB3717

PDB-1aoa:
N-TERMINAL ACTIN-CROSSLINKING DOMAIN FROM HUMAN FIMBRIN

PDB-1aob:
E. COLI THYMIDYLATE SYNTHASE COMPLEXED WITH DDURD

PDB-1aoc:
JAPANESE HORSESHOE CRAB COAGULOGEN

由来
  • severe acute respiratory syndrome coronavirus 2 (ウイルス)
  • severe acute respiratory syndrome coronavirus 2 (2019-ncov) (sars-cov-2) (ウイルス)
キーワードVIRAL PROTEIN / Hydrolase / ASAP / AViDD / Diamond I04-1 / crystallographic fragment screening / PanDDA / XChemExplorer / SARS-CoV-2

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万見文献について

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お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月：コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか？ / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例：em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見文献

EMDB/PDB/SASBDBから引用されている文献のデータベース

  • EMDB/PDB/SASBDBのエントリから引用されている文献のデータベースです
  • Pubmedのデータを利用しています

関連情報:EMDB / PDB / SASBDB / 万見 (Yorodumi) / EMN文献 / 新しいEM Navigatorと万見の変更点

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