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- PDB-1akp: SEQUENTIAL 1H,13C AND 15N NMR ASSIGNMENTS AND SOLUTION CONFORMATI... -

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Entry
Database: PDB / ID: 1akp
TitleSEQUENTIAL 1H,13C AND 15N NMR ASSIGNMENTS AND SOLUTION CONFORMATION OF APOKEDARCIDIN
ComponentsAPOKEDARCIDIN
KeywordsANTIBIOTIC CHROMOPROTEIN
Function / homology
Function and homology information


defense response to bacterium / DNA binding
Similarity search - Function
Neocarzinostatin-like / Neocarzinostatin family / Neocarzinostatin family / Neocarzinostatin-like / Immunoglobulin-like / Sandwich / Mainly Beta
Similarity search - Domain/homology
Biological speciesactinomycete ATCC 53650 (bacteria)
MethodSOLUTION NMR
AuthorsConstantine, K.L. / Colson, K.L. / Wittekind, M. / Friedrichs, M.S. / Zein, N. / Tuttle, J. / Langley, D.R. / Leet, J.E. / Schroeder, D.R. / Lam, K.S. ...Constantine, K.L. / Colson, K.L. / Wittekind, M. / Friedrichs, M.S. / Zein, N. / Tuttle, J. / Langley, D.R. / Leet, J.E. / Schroeder, D.R. / Lam, K.S. / Farmer II, B.T. / Metzler, W.J. / Bruccoleri, R.E. / Mueller, L.
Citation
Journal: Biochemistry / Year: 1994
Title: Sequential 1H, 13C, and 15N NMR assignments and solution conformation of apokedarcidin.
Authors: Constantine, K.L. / Colson, K.L. / Wittekind, M. / Friedrichs, M.S. / Zein, N. / Tuttle, J. / Langley, D.R. / Leet, J.E. / Schroeder, D.R. / Lam, K.S. / Farmer III, B.T. / Metzler, W.J. / ...Authors: Constantine, K.L. / Colson, K.L. / Wittekind, M. / Friedrichs, M.S. / Zein, N. / Tuttle, J. / Langley, D.R. / Leet, J.E. / Schroeder, D.R. / Lam, K.S. / Farmer III, B.T. / Metzler, W.J. / Bruccoleri, R.E. / Mueller, L.
#1: Journal: J.Am.Chem.Soc. / Year: 1993
Title: Chemistry and Structure Elucidation of the Kedarcidin Chromophore
Authors: Leet, J.E. / Schroeder, D.R. / Langley, D.R. / Colson, K.L. / Huang, S. / Klohr, S.E. / Lee, M.S. / Golik, J. / Hofstead, S.J. / Doyle, T.W. / Matson, J.A.
#2: Journal: Proc.Natl.Acad.Sci.USA / Year: 1993
Title: Kedarcidin Chromophore: An Enediyne that Cleaves DNA in a Sequence-Specific Manner
Authors: Zein, N. / Colson, K.L. / Leet, J.E. / Schroeder, D.R. / Solomon, W. / Doyle, T.W. / Casazza, A.M.
#3: Journal: Proc.Natl.Acad.Sci.USA / Year: 1993
Title: Selective Proteolytic Activity of the Antitumor Agent Kedarcidin
Authors: Zein, N. / Casazza, A.M. / Doyle, T.W. / Leet, J.E. / Scheoeder, D.R. / Solomon, W. / Nadler, S.G.
#4: Journal: J.Antibiot. / Year: 1992
Title: Kedarcidin, a New Chromoprotein Antitumor Antibiotic. II. Isolation, Purification and Physico-Chemical Properties
Authors: Hofstead, S.J. / Matson, J.A. / Malacko, A.R. / Marquart, H.
#5: Journal: J.Antibiot. / Year: 1991
Title: Kedarcidin, a New Chromoprotein Antitumor Antibiotic I. Taxonomy of Producing Organism, Fermentation and Biological Activity
Authors: Lam, K.S. / Hesler, G.A. / Gustavson, D.R. / Crosswell, A.R. / Veitch, J.M. / Forenza, S. / Tomita, K.
History
DepositionJun 20, 1994Processing site: BNL
Revision 1.0Aug 31, 1994Provider: repository / Type: Initial release
Revision 1.1Mar 3, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Feb 22, 2012Group: Database references
Revision 1.4Nov 29, 2017Group: Derived calculations / Other
Category: pdbx_database_status / struct_conf / struct_conf_type
Item: _pdbx_database_status.process_site
Revision 1.5Oct 16, 2024Group: Data collection / Database references / Structure summary
Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_entry_details / pdbx_modification_feature
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: APOKEDARCIDIN


Theoretical massNumber of molelcules
Total (without water)10,9731
Polymers10,9731
Non-polymers00
Water00
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Atom site foot note1: CIS PROLINE - PRO 9 / 2: CIS PROLINE - PRO 81
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)15 / -
Representative

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Components

#1: Protein APOKEDARCIDIN


Mass: 10972.936 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) actinomycete ATCC 53650 (bacteria) / Strain: L585-6 / ATCC 53650 / References: UniProt: P41249
Has protein modificationY

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR

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Sample preparation

Crystal grow
*PLUS
Method: other / Details: NMR

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Processing

Software
NameClassification
X-PLORmodel building
X-PLORrefinement
X-PLORphasing
NMR softwareName: X-PLOR / Developer: BRUNGER / Classification: refinement
NMR ensembleConformers submitted total number: 15

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