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Yorodumi- PDB-1rbn: THE STRUCTURE OF RIBONUCLEASE A DERIVATIVE II AT 2.1 ANGSTROMS RE... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1rbn | ||||||
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Title | THE STRUCTURE OF RIBONUCLEASE A DERIVATIVE II AT 2.1 ANGSTROMS RESOLUTION | ||||||
Components | RIBONUCLEASE A | ||||||
Keywords | HYDROLASE(NUCLEIC ACID / RNA) | ||||||
Function / homology | Function and homology information pancreatic ribonuclease / ribonuclease A activity / RNA nuclease activity / nucleic acid binding / lyase activity / defense response to Gram-positive bacterium / extracellular region Similarity search - Function | ||||||
Biological species | Bos taurus (cattle) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.1 Å | ||||||
Authors | Boque, L. / Fita, I. | ||||||
Citation | Journal: J.Biol.Chem. / Year: 1994 Title: Structure of ribonuclease A derivative II at 2.1-A resolution. Authors: Boque, L. / Gracia Coll, M. / Vilanova, M. / Cuchillo, C.M. / Fita, I. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1rbn.cif.gz | 39 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1rbn.ent.gz | 26.9 KB | Display | PDB format |
PDBx/mmJSON format | 1rbn.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1rbn_validation.pdf.gz | 443.9 KB | Display | wwPDB validaton report |
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Full document | 1rbn_full_validation.pdf.gz | 447.5 KB | Display | |
Data in XML | 1rbn_validation.xml.gz | 4.6 KB | Display | |
Data in CIF | 1rbn_validation.cif.gz | 7 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/rb/1rbn ftp://data.pdbj.org/pub/pdb/validation_reports/rb/1rbn | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Atom site foot note | 1: CIS PROLINE - PRO 93 / 2: CIS PROLINE - PRO 114 |
-Components
#1: Protein | Mass: 13708.326 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Bos taurus (cattle) / Tissue: LIVER / Organ: LIVER / References: UniProt: P61823, EC: 3.1.27.5 |
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#2: Chemical | ChemComp-P5P / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.13 Å3/Da / Density % sol: 42.17 % | ||||||||||||
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Crystal | *PLUS Density % sol: 42 % | ||||||||||||
Crystal grow | *PLUS pH: 3.8 / Method: vapor diffusion, hanging drop | ||||||||||||
Components of the solutions | *PLUS
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-Data collection
Reflection | *PLUS Highest resolution: 2.1 Å / Lowest resolution: 8 Å / Num. obs: 6538 / % possible obs: 92.1 % / Observed criterion σ(I): 2 / Rmerge(I) obs: 0.093 |
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Reflection shell | *PLUS Highest resolution: 2.1 Å / Lowest resolution: 2.2 Å |
-Processing
Software |
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Refinement | Resolution: 2.1→8 Å / σ(I): 2 /
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Refinement step | Cycle: LAST / Resolution: 2.1→8 Å
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Refine LS restraints |
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