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Yorodumi- PDB-1ajl: FIVE-NUCLEOTIDE BULGE LOOP FROM TETRAHYMENA THERMOPHILA GROUP I INTRON -
+Open data
-Basic information
Entry | Database: PDB / ID: 1ajl | ||||||
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Title | FIVE-NUCLEOTIDE BULGE LOOP FROM TETRAHYMENA THERMOPHILA GROUP I INTRON | ||||||
Components |
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Keywords | RNA / RNA BULGE LOOP / GROUP I INTRON / RIBONUCLEIC ACID | ||||||
Function / homology | RNA / RNA (> 10) Function and homology information | ||||||
Biological species | Tetrahymena thermophila (eukaryote) | ||||||
Method | SOLUTION NMR / RESTRAINED MOLECULAR DYNAMICS | ||||||
Authors | Luebke, K.J. / Landry, S.M. / Tinoco Junior, I. | ||||||
Citation | Journal: Biochemistry / Year: 1997 Title: Solution conformation of a five-nucleotide RNA bulge loop from a group I intron. Authors: Luebke, K.J. / Landry, S.M. / Tinoco, I. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1ajl.cif.gz | 19.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1ajl.ent.gz | 12.2 KB | Display | PDB format |
PDBx/mmJSON format | 1ajl.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1ajl_validation.pdf.gz | 295.1 KB | Display | wwPDB validaton report |
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Full document | 1ajl_full_validation.pdf.gz | 294.8 KB | Display | |
Data in XML | 1ajl_validation.xml.gz | 2 KB | Display | |
Data in CIF | 1ajl_validation.cif.gz | 2.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/aj/1ajl ftp://data.pdbj.org/pub/pdb/validation_reports/aj/1ajl | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 3836.344 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Details: FIVE-NUCLEOTIDE BULGE / Source: (gene. exp.) Tetrahymena thermophila (eukaryote) Description: IN VITRO TRANSCRIPT FROM OLIGONUCLEOTIDE TEMPLATE USING T7 RNA POLYMERASE |
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#2: RNA chain | Mass: 2220.395 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Details: FIVE-NUCLEOTIDE BULGE / Source: (gene. exp.) Tetrahymena thermophila (eukaryote) Description: IN VITRO TRANSCRIPT FROM OLIGONUCLEOTIDE TEMPLATE USING T7 RNA POLYMERASE |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Sample conditions | pH: 6.7 / Temperature: 298 K |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer |
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-Processing
Software |
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NMR software |
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Refinement | Method: RESTRAINED MOLECULAR DYNAMICS / Software ordinal: 1 Details: REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. | ||||||||||||||||
NMR ensemble | Conformer selection criteria: LEAST RESTRAINT VIOLATION / Conformers calculated total number: 20 / Conformers submitted total number: 1 |