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Yorodumi- PDB-1jox: NMR Structure of the LP5.1 Hairpin from Bacillus RNase P RNA Refi... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1jox | ||||||||||||||||||
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Title | NMR Structure of the LP5.1 Hairpin from Bacillus RNase P RNA Refined with Residual Dipolar Couplings | ||||||||||||||||||
Components | 5'-R(*Keywords | RNA / RIBONUCLEIC ACID / RNASE P / HAIRPIN / RESIDUAL DIPOLAR COUPLING REFINEMENT / UGNRAU | Function / homology | RNA / RNA (> 10) | Function and homology information Method | SOLUTION NMR / torsion angle dynamics | Authors | Leeper, T.C. / Schmidt, F.J. / Van Doren, S.R. | Citation | Journal: Nat.Struct.Biol. / Year: 2002 | Title: Structure of the UGAGAU hexaloop that braces Bacillus RNase P for action. Authors: Leeper, T.C. / Martin, M.B. / Kim, H. / Cox, S. / Semenchenko, V. / Schmidt, F.J. / Van Doren, S.R. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1jox.cif.gz | 310.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1jox.ent.gz | 260.3 KB | Display | PDB format |
PDBx/mmJSON format | 1jox.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1jox_validation.pdf.gz | 322.4 KB | Display | wwPDB validaton report |
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Full document | 1jox_full_validation.pdf.gz | 460.4 KB | Display | |
Data in XML | 1jox_validation.xml.gz | 35.5 KB | Display | |
Data in CIF | 1jox_validation.cif.gz | 54.1 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/jo/1jox ftp://data.pdbj.org/pub/pdb/validation_reports/jo/1jox | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 6776.060 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: IN VITRO TRANSCRIPTION |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M | |||||||||||||||
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Radiation wavelength | Relative weight: 1 | |||||||||||||||
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: torsion angle dynamics / Software ordinal: 1 / Details: residual dipolar coupling refinement | ||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 24 |