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- PDB-1jp0: NMR Structure of the LP5.1 Hairpin from Bacillus RNase P RNA Refi... -
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Basic information
Entry | Database: PDB / ID: 1jp0 | ||||||||||||||||||
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Title | NMR Structure of the LP5.1 Hairpin from Bacillus RNase P RNA Refined WITHOUT Residual Dipolar Couplings | ||||||||||||||||||
![]() | 5'-R(*![]() RNA / RIBONUCLEIC ACID / RNASE P / HAIRPIN / RESIDUAL DIPOLAR COUPLING REFINEMENT / UGNRAU | Function / homology | RNA / RNA (> 10) | ![]() Method | SOLUTION NMR / torsion angle dynamics | ![]() Leeper, T.C. / Schmidt, F.J. / Van Doren, S.R. | ![]() ![]() Title: Structure of the UGAGAU hexaloop that braces Bacillus RNase P for action. Authors: Leeper, T.C. / Martin, M.B. / Kim, H. / Cox, S. / Semenchenko, V. / Schmidt, F.J. / Van Doren, S.R. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 359.9 KB | Display | ![]() |
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PDB format | ![]() | 303.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Summary document | ![]() | 321.7 KB | Display | ![]() |
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Full document | ![]() | 478.6 KB | Display | |
Data in XML | ![]() | 32 KB | Display | |
Data in CIF | ![]() | 51 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: RNA chain | Mass: 6776.060 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: IN VITRO TRANSCRIPTION |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details |
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Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M | |||||||||||||||
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Radiation wavelength | Relative weight: 1 | |||||||||||||||
NMR spectrometer |
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Processing
NMR software |
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Refinement | Method: torsion angle dynamics / Software ordinal: 1 Details: residual dipolar coupling refinement were NOT used for this structure, see 1JOX. | ||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 28 |