[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 3,635 items for (author: peter & v)

EMDB-77061:
95-bp double-stranded DNA minicircle: poly(A:T) model
Method: single particle / : Liu Y, Qin PZ

PDB-13gq:
95-bp double-stranded DNA minicircle: poly(A:T) model
Method: single particle / : Liu Y, Qin PZ

EMDB-18469:
Asymmetric structure of Satellite Tobacco Necrosis Virus-Like Particle with PS2/3 gRNA
Method: single particle / : Javed A, Mata PC, Stockley P

PDB-8qkp:
Asymmetric structure of Satellite Tobacco Necrosis Virus-Like Particle with PS2/3 gRNA
Method: single particle / : Javed A, Mata PC, Stockley P

EMDB-72790:
Neurotensin Receptor 1 (NTSR1) bound to Octotensin in complex with Gi3 in the Non-Canonical Orientation
Method: single particle / : Robertson MJ

EMDB-72791:
Neurotensin Receptor 1 (NTSR1) bound to Octotensin in complex with Gi3 in the Canonical Orientation
Method: single particle / : Robertson MJ

EMDB-73770:
CryoEM Structure of VEEV VLP treated with 0.5 biFABs/Spike
Method: single particle / : Morano NC, Pletnev S, Shapiro L, Kwong PD

EMDB-77155:
VIPR Binary Complex - Consensus Conformation
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77156:
VIPR Binary Complex with one filament
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77157:
VIPR Binary Complex with two filaments
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77176:
VIPR Ternary Complex with a pre-unwound dsDNA substrate, 11 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77183:
VIPR Ternary Complex with a pre-unwound dsDNA substrate, 12 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77184:
VIPR Ternary Complex with an ssRNA substrate, Closed Conformation
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77185:
VIPR Ternary Complex with an ssRNA substrate, Closed Conformation, 11 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77731:
VIPR Ternary Complex with an ssDNA substrate, 10 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77732:
VIPR Ternary Complex with an ssDNA substrate, 11 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77733:
P. fulva VIPR Ternary Complex with four subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77734:
VIPR Ternary Complex with an ssDNA substrate, 12 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77735:
VIPR Ternary Complex with a duplex dsDNA substrate, 5 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77736:
VIPR Ternary Complex with a duplex dsDNA substrate, 11 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77738:
VIPR Ternary Complex with a duplex dsDNA substrate, 7 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77739:
VIPR Ternary Complex with a duplex dsDNA substrate, 10 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77740:
VIPR Ternary Complex with a duplex dsDNA substrate, 9 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77742:
VIPR Ternary Complex with a duplex dsDNA substrate, 8 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77745:
P. fulva VIPR Ternary Complex Consensus Conformation
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-35se:
VIPR Binary Complex - Consensus Conformation
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-35sf:
VIPR Binary Complex with one filament
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-35sg:
VIPR Binary Complex with two filaments
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-35sy:
VIPR Ternary Complex with a pre-unwound dsDNA substrate, 11 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-35tr:
VIPR Ternary Complex with a pre-unwound dsDNA substrate, 12 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-35tw:
VIPR Ternary Complex with an ssRNA substrate, Closed Conformation
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-35tx:
VIPR Ternary Complex with an ssRNA substrate, Closed Conformation, 11 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-36pb:
VIPR Ternary Complex with an ssDNA substrate, 10 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-36pc:
VIPR Ternary Complex with an ssDNA substrate, 11 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-36pd:
P. fulva VIPR Ternary Complex with four subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-36pe:
VIPR Ternary Complex with an ssDNA substrate, 12 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-36pf:
VIPR Ternary Complex with a duplex dsDNA substrate, 5 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-36pg:
VIPR Ternary Complex with a duplex dsDNA substrate, 11 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-36pj:
VIPR Ternary Complex with a duplex dsDNA substrate, 7 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-36pk:
VIPR Ternary Complex with a duplex dsDNA substrate, 10 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-36pm:
VIPR Ternary Complex with a duplex dsDNA substrate, 9 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-36po:
VIPR Ternary Complex with a duplex dsDNA substrate, 8 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-36pr:
P. fulva VIPR Ternary Complex Consensus Conformation
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-74629:
Shigella flexneri type III secretion system (T3SS) protein IpaD bound to hemolysis blocking Fab D02-F2 and hemolysis enhancing Fab D02-E4
Method: single particle / : Gilman MSA, Kruse AC, Schmidt HR

EMDB-74630:
Shigella flexneri type III secretion system (T3SS) protein IpaD bound to hemolysis blocking antibody fragment D13r-34
Method: single particle / : Gilman MSA, Kruse AC, Schmidt HR

PDB-9zrs:
Shigella flexneri type III secretion system (T3SS) protein IpaD bound to hemolysis blocking Fab D02-F2 and hemolysis enhancing Fab D02-E4
Method: single particle / : Gilman MSA, Kruse AC, Schmidt HR

PDB-9zrt:
Shigella flexneri type III secretion system (T3SS) protein IpaD bound to hemolysis blocking antibody fragment D13r-34
Method: single particle / : Gilman MSA, Kruse AC, Schmidt HR

EMDB-73556:
the structure of ERMA complex with ATPrS and Mg++
Method: single particle / : Shi N, Jiang Y

EMDB-73630:
the structure of ERMA Mg2+ bound form
Method: single particle / : Shi N, Jiang Y

PDB-9ywq:
the structure of ERMA complex with ATPrS and Mg++
Method: single particle / : Shi N, Jiang Y

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more