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- PDB-9pq3: Cryo-EM structure of HIV-1 459C-ALT DS-SOSIP RnS Env trimer -

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Basic information

Entry
Database: PDB / ID: 9pq3
TitleCryo-EM structure of HIV-1 459C-ALT DS-SOSIP RnS Env trimer
Components(HIV-1 459C-ALT RnS DS-SOSIP ...) x 2
KeywordsVIRAL PROTEIN / Envelope trimer / 459C-ALT / RnS DS-SOSIP immunogen
Biological speciesHuman immunodeficiency virus 1
MethodELECTRON MICROSCOPY / single particle reconstruction / cryo EM / Resolution: 3.94 Å
AuthorsWang, S. / Zhou, T. / Kwong, P.D. / Morano, N.C. / Shapiro, L.
Funding support United States, 1items
OrganizationGrant numberCountry
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) United States
CitationJournal: To Be Published
Title: Dual Vaccine Elicitation of HIV-1 Neutralizing Antibodies against V2 Apex and Fusion Peptide
Authors: Duan, H. / Nkolola, J.P. / Wang, S. / Kwong, P.D. / Barouch, D.H. / Zhou, T.
History
DepositionJul 22, 2025Deposition site: RCSB / Processing site: RCSB
Revision 1.0Dec 17, 2025Provider: repository / Type: Initial release
Revision 1.0Dec 17, 2025Data content type: EM metadata / Data content type: EM metadata / Provider: repository / Type: Initial release
Revision 1.0Dec 17, 2025Data content type: FSC / Data content type: FSC / Provider: repository / Type: Initial release
Revision 1.0Dec 17, 2025Data content type: Half map / Part number: 1 / Data content type: Half map / Provider: repository / Type: Initial release
Revision 1.0Dec 17, 2025Data content type: Half map / Part number: 2 / Data content type: Half map / Provider: repository / Type: Initial release
Revision 1.0Dec 17, 2025Data content type: Image / Data content type: Image / Provider: repository / Type: Initial release
Revision 1.0Dec 17, 2025Data content type: Primary map / Data content type: Primary map / Provider: repository / Type: Initial release

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Assembly

Deposited unit
A: HIV-1 459C-ALT RnS DS-SOSIP gp41
C: HIV-1 459C-ALT RnS DS-SOSIP gp120
B: HIV-1 459C-ALT RnS DS-SOSIP gp41
G: HIV-1 459C-ALT RnS DS-SOSIP gp120
F: HIV-1 459C-ALT RnS DS-SOSIP gp41
I: HIV-1 459C-ALT RnS DS-SOSIP gp120
hetero molecules


Theoretical massNumber of molelcules
Total (without water)240,75966
Polymers210,5606
Non-polymers30,19960
Water00
1


  • Idetical with deposited unit
  • defined by author&software
  • Evidence: electron microscopy, not applicable
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Noncrystallographic symmetry (NCS)NCS domain:
IDEns-IDDetails
d_1ens_1chain "A"
d_2ens_1chain "B"
d_3ens_1chain "F"
d_1ens_2chain "C"
d_2ens_2chain "G"
d_3ens_2chain "I"

NCS domain segments:
Dom-IDComponent-IDEns-IDBeg auth comp-IDBeg label comp-IDEnd auth comp-IDEnd label comp-IDAuth asym-IDLabel asym-IDAuth seq-IDLabel seq-ID
d_11ens_1VALVALASPASPAA518 - 6647 - 153
d_12ens_1NAGNAGNAGNAGAZA701
d_13ens_1NAGNAGNAGNAGAAB702
d_21ens_1VALVALASPASPBC518 - 6647 - 153
d_22ens_1NAGNAGNAGNAGBEB701
d_23ens_1NAGNAGNAGNAGBFB702
d_31ens_1VALVALASPASPFE518 - 6647 - 153
d_32ens_1NAGNAGNAGNAGFJB701
d_33ens_1NAGNAGNAGNAGFKB702
d_11ens_2GLYGLYVALVALCB32 - 5051 - 466
d_12ens_2NAGNAGNAGNAGDG1
d_13ens_2NAGNAGNAGNAGDG2
d_14ens_2NAGNAGNAGNAGCBB601
d_15ens_2NAGNAGNAGNAGEH1
d_16ens_2NAGNAGNAGNAGEH2
d_17ens_2NAGNAGNAGNAGCCB602
d_18ens_2NAGNAGNAGNAGHI1
d_19ens_2NAGNAGNAGNAGHI2
d_110ens_2BMABMABMABMAHI3
d_111ens_2NAGNAGNAGNAGJJ1
d_112ens_2NAGNAGNAGNAGJJ2
d_113ens_2BMABMABMABMAJJ3
d_114ens_2MANMANMANMANJJ4
d_115ens_2MANMANMANMANJJ5
d_116ens_2MANMANMANMANJJ6
d_117ens_2NAGNAGNAGNAGKK1
d_118ens_2NAGNAGNAGNAGKK2
d_119ens_2BMABMABMABMAKK3
d_120ens_2NAGNAGNAGNAGLL1
d_121ens_2NAGNAGNAGNAGLL2
d_122ens_2NAGNAGNAGNAGCDB603
d_123ens_2NAGNAGNAGNAGMM1
d_124ens_2NAGNAGNAGNAGMM2
d_125ens_2BMABMABMABMAMM3
d_126ens_2MANMANMANMANMM4
d_127ens_2NAGNAGNAGNAGNN1
d_128ens_2NAGNAGNAGNAGNN2
d_129ens_2BMABMABMABMANN3
d_130ens_2MANMANMANMANNN4
d_131ens_2MANMANMANMANNN5
d_132ens_2NAGNAGNAGNAGOO1
d_133ens_2NAGNAGNAGNAGOO2
d_134ens_2NAGNAGNAGNAGPP1
d_135ens_2NAGNAGNAGNAGPP2
d_136ens_2BMABMABMABMAPP3
d_137ens_2NAGNAGNAGNAGQQ1
d_138ens_2NAGNAGNAGNAGQQ2
d_139ens_2BMABMABMABMAQQ3
d_140ens_2NAGNAGNAGNAGRR1
d_141ens_2NAGNAGNAGNAGRR2
d_142ens_2BMABMABMABMARR3
d_143ens_2NAGNAGNAGNAGSS1
d_144ens_2NAGNAGNAGNAGSS2
d_145ens_2BMABMABMABMASS3
d_146ens_2NAGNAGNAGNAGTT1
d_147ens_2NAGNAGNAGNAGTT2
d_148ens_2NAGNAGNAGNAGUU1
d_149ens_2NAGNAGNAGNAGUU2
d_150ens_2BMABMABMABMAUU3
d_21ens_2GLYGLYVALVALGD32 - 5051 - 466
d_22ens_2NAGNAGNAGNAGVV1
d_23ens_2NAGNAGNAGNAGVV2
d_24ens_2NAGNAGNAGNAGGGB601
d_25ens_2NAGNAGNAGNAGWW1
d_26ens_2NAGNAGNAGNAGWW2
d_27ens_2NAGNAGNAGNAGGHB602
d_28ens_2NAGNAGNAGNAGXX1
d_29ens_2NAGNAGNAGNAGXX2
d_210ens_2BMABMABMABMAXX3
d_211ens_2NAGNAGNAGNAGYY1
d_212ens_2NAGNAGNAGNAGYY2
d_213ens_2BMABMABMABMAYY3
d_214ens_2MANMANMANMANYY4
d_215ens_2MANMANMANMANYY5
d_216ens_2MANMANMANMANYY6
d_217ens_2NAGNAGNAGNAGZZ1
d_218ens_2NAGNAGNAGNAGZZ2
d_219ens_2BMABMABMABMAZZ3
d_220ens_2NAGNAGNAGNAGaAA1
d_221ens_2NAGNAGNAGNAGaAA2
d_222ens_2NAGNAGNAGNAGGIB603
d_223ens_2NAGNAGNAGNAGbBA1
d_224ens_2NAGNAGNAGNAGbBA2
d_225ens_2BMABMABMABMAbBA3
d_226ens_2MANMANMANMANbBA4
d_227ens_2NAGNAGNAGNAGcCA1
d_228ens_2NAGNAGNAGNAGcCA2
d_229ens_2BMABMABMABMAcCA3
d_230ens_2MANMANMANMANcCA4
d_231ens_2MANMANMANMANcCA5
d_232ens_2NAGNAGNAGNAGdDA1
d_233ens_2NAGNAGNAGNAGdDA2
d_234ens_2NAGNAGNAGNAGeEA1
d_235ens_2NAGNAGNAGNAGeEA2
d_236ens_2BMABMABMABMAeEA3
d_237ens_2NAGNAGNAGNAGfFA1
d_238ens_2NAGNAGNAGNAGfFA2
d_239ens_2BMABMABMABMAfFA3
d_240ens_2NAGNAGNAGNAGgGA1
d_241ens_2NAGNAGNAGNAGgGA2
d_242ens_2BMABMABMABMAgGA3
d_243ens_2NAGNAGNAGNAGhHA1
d_244ens_2NAGNAGNAGNAGhHA2
d_245ens_2BMABMABMABMAhHA3
d_246ens_2NAGNAGNAGNAGiIA1
d_247ens_2NAGNAGNAGNAGiIA2
d_248ens_2NAGNAGNAGNAGjJA1
d_249ens_2NAGNAGNAGNAGjJA2
d_250ens_2BMABMABMABMAjJA3
d_31ens_2GLYGLYVALVALIF32 - 5051 - 466
d_32ens_2NAGNAGNAGNAGkKA1
d_33ens_2NAGNAGNAGNAGkKA2
d_34ens_2NAGNAGNAGNAGILB601
d_35ens_2NAGNAGNAGNAGlLA1
d_36ens_2NAGNAGNAGNAGlLA2
d_37ens_2NAGNAGNAGNAGIMB602
d_38ens_2NAGNAGNAGNAGmMA1
d_39ens_2NAGNAGNAGNAGmMA2
d_310ens_2BMABMABMABMAmMA3
d_311ens_2NAGNAGNAGNAGnNA1
d_312ens_2NAGNAGNAGNAGnNA2
d_313ens_2BMABMABMABMAnNA3
d_314ens_2MANMANMANMANnNA4
d_315ens_2MANMANMANMANnNA5
d_316ens_2MANMANMANMANnNA6
d_317ens_2NAGNAGNAGNAGoOA1
d_318ens_2NAGNAGNAGNAGoOA2
d_319ens_2BMABMABMABMAoOA3
d_320ens_2NAGNAGNAGNAGpPA1
d_321ens_2NAGNAGNAGNAGpPA2
d_322ens_2NAGNAGNAGNAGINB603
d_323ens_2NAGNAGNAGNAGqQA1
d_324ens_2NAGNAGNAGNAGqQA2
d_325ens_2BMABMABMABMAqQA3
d_326ens_2MANMANMANMANqQA4
d_327ens_2NAGNAGNAGNAGrRA1
d_328ens_2NAGNAGNAGNAGrRA2
d_329ens_2BMABMABMABMArRA3
d_330ens_2MANMANMANMANrRA4
d_331ens_2MANMANMANMANrRA5
d_332ens_2NAGNAGNAGNAGsSA1
d_333ens_2NAGNAGNAGNAGsSA2
d_334ens_2NAGNAGNAGNAGtTA1
d_335ens_2NAGNAGNAGNAGtTA2
d_336ens_2BMABMABMABMAtTA3
d_337ens_2NAGNAGNAGNAGuUA1
d_338ens_2NAGNAGNAGNAGuUA2
d_339ens_2BMABMABMABMAuUA3
d_340ens_2NAGNAGNAGNAGvVA1
d_341ens_2NAGNAGNAGNAGvVA2
d_342ens_2BMABMABMABMAvVA3
d_343ens_2NAGNAGNAGNAGwWA1
d_344ens_2NAGNAGNAGNAGwWA2
d_345ens_2BMABMABMABMAwWA3
d_346ens_2NAGNAGNAGNAGxXA1
d_347ens_2NAGNAGNAGNAGxXA2
d_348ens_2NAGNAGNAGNAGyYA1
d_349ens_2NAGNAGNAGNAGyYA2
d_350ens_2BMABMABMABMAyYA3

NCS ensembles :
ID
ens_1
ens_2

NCS oper:
IDCodeMatrixVector
1given(-0.502994695309, -0.86428657994, -0.00224593543163), (0.864288911771, -0.50298962899, -0.00247186528976), (0.00100671776787, -0.00318447221838, 0.999994422812)422.169377484, 114.101442387, 0.309834208659
2given(-0.509881902655, 0.860243197293, 0.00144459548547), (-0.860234298097, -0.509883332418, 0.00399245550024), (0.0041710578447, 0.000792990223249, 0.999990986681)115.489791385, 421.603751134, -0.845615977092
3given(-0.498607612752, -0.866827354049, -0.000887005124785), (0.866826984745, -0.49860546805, -0.00188831900851), (0.00119458096434, -0.00171041021072, 0.999997823734)421.693953188, 112.985614769, 0.0422399632589
4given(-0.499854552917, 0.866109265007, 0.000408652393572), (-0.866109359174, -0.499854529912, -0.000163942674241), (6.22744809961E-5, -0.000435885154859, 0.999999903063)112.85894256, 421.659911154, 0.0386864152997

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Components

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HIV-1 459C-ALT RnS DS-SOSIP ... , 2 types, 6 molecules ABFCGI

#1: Protein HIV-1 459C-ALT RnS DS-SOSIP gp41


Mass: 17137.424 Da / Num. of mol.: 3
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Human immunodeficiency virus 1 / Cell line (production host): HEK-Expi293 / Production host: Homo sapiens (human)
#2: Protein HIV-1 459C-ALT RnS DS-SOSIP gp120


Mass: 53049.219 Da / Num. of mol.: 3
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Human immunodeficiency virus 1 / Cell line (production host): HEK-Expi293 / Production host: Homo sapiens (human)

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Sugars , 6 types, 60 molecules

#3: Polysaccharide
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose


Type: oligosaccharide / Mass: 424.401 Da / Num. of mol.: 15
Source method: isolated from a genetically manipulated source
DescriptorTypeProgram
DGlcpNAcb1-4DGlcpNAcb1-Glycam Condensed SequenceGMML 1.0
WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1WURCSPDB2Glycan 1.1.0
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}LINUCSPDB-CARE
#4: Polysaccharide...
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta- ...beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose


Type: oligosaccharide / Mass: 586.542 Da / Num. of mol.: 21
Source method: isolated from a genetically manipulated source
DescriptorTypeProgram
DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-Glycam Condensed SequenceGMML 1.0
WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1WURCSPDB2Glycan 1.1.0
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}LINUCSPDB-CARE
#5: Polysaccharide alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D- ...alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose


Type: oligosaccharide / Mass: 1072.964 Da / Num. of mol.: 3
Source method: isolated from a genetically manipulated source
DescriptorTypeProgram
DManpa1-2DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-Glycam Condensed SequenceGMML 1.0
WURCS=2.0/3,6,5/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-3-3/a4-b1_b4-c1_c3-d1_c6-f1_d2-e1WURCSPDB2Glycan 1.1.0
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{[(2+1)][a-D-Manp]{}}[(6+1)][a-D-Manp]{}}}}}LINUCSPDB-CARE
#6: Polysaccharide alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1- ...alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose


Type: oligosaccharide / Mass: 748.682 Da / Num. of mol.: 3
Source method: isolated from a genetically manipulated source
DescriptorTypeProgram
DManpa1-3DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-Glycam Condensed SequenceGMML 1.0
WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3/a4-b1_b4-c1_c3-d1WURCSPDB2Glycan 1.1.0
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}}}}}LINUCSPDB-CARE
#7: Polysaccharide alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2- ...alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose


Type: oligosaccharide / Mass: 910.823 Da / Num. of mol.: 3
Source method: isolated from a genetically manipulated source
DescriptorTypeProgram
DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-Glycam Condensed SequenceGMML 1.0
WURCS=2.0/3,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-3/a4-b1_b4-c1_c3-d1_c6-e1WURCSPDB2Glycan 1.1.0
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}}}LINUCSPDB-CARE
#8: Sugar
ChemComp-NAG / 2-acetamido-2-deoxy-beta-D-glucopyranose / N-acetyl-beta-D-glucosamine / 2-acetamido-2-deoxy-beta-D-glucose / 2-acetamido-2-deoxy-D-glucose / 2-acetamido-2-deoxy-glucose / N-ACETYL-D-GLUCOSAMINE


Type: D-saccharide, beta linking / Mass: 221.208 Da / Num. of mol.: 15 / Source method: obtained synthetically / Formula: C8H15NO6
IdentifierTypeProgram
DGlcpNAcbCONDENSED IUPAC CARBOHYDRATE SYMBOLGMML 1.0
N-acetyl-b-D-glucopyranosamineCOMMON NAMEGMML 1.0
b-D-GlcpNAcIUPAC CARBOHYDRATE SYMBOLPDB-CARE 1.0
GlcNAcSNFG CARBOHYDRATE SYMBOLGMML 1.0

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Details

Has ligand of interestN
Has protein modificationY

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Experimental details

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Experiment

ExperimentMethod: ELECTRON MICROSCOPY
EM experimentAggregation state: PARTICLE / 3D reconstruction method: single particle reconstruction

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Sample preparation

ComponentName: HIV-1 Env 459C-ALT RnS DS-SOSIP / Type: COMPLEX / Entity ID: #1-#2 / Source: RECOMBINANT
Source (natural)Organism: Human immunodeficiency virus 1
Source (recombinant)Organism: Homo sapiens (human) / Cell: HEK-Expi293
Buffer solutionpH: 7.4 / Details: PBS + 0.005% (w/v) DDM
SpecimenEmbedding applied: NO / Shadowing applied: NO / Staining applied: NO / Vitrification applied: YES
Specimen supportGrid material: COPPER / Grid mesh size: 300 divisions/in. / Grid type: Quantifoil R1.2/1.3
VitrificationInstrument: FEI VITROBOT MARK IV / Cryogen name: ETHANE / Humidity: 95 % / Chamber temperature: 277 K

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Electron microscopy imaging

Experimental equipment
Model: Titan Krios / Image courtesy: FEI Company
MicroscopyModel: TFS KRIOS
Electron gunElectron source: FIELD EMISSION GUN / Accelerating voltage: 300 kV / Illumination mode: FLOOD BEAM
Electron lensMode: BRIGHT FIELD / Nominal defocus max: 2000 nm / Nominal defocus min: 800 nm / Cs: 2.7 mm
Image recordingElectron dose: 58 e/Å2 / Film or detector model: GATAN K3 BIOQUANTUM (6k x 4k)

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Processing

EM software
IDNameVersionCategory
1cryoSPARC4.4.1particle selection
4cryoSPARC4.4.1CTF correction
7UCSF ChimeraX1.9model fitting
9PHENIX1.21.2_5419model refinement
10UCSF ChimeraX1.9initial Euler assignment
12cryoSPARC4.4.1classification
13cryoSPARC4.4.13D reconstruction
CTF correctionType: PHASE FLIPPING AND AMPLITUDE CORRECTION
SymmetryPoint symmetry: C3 (3 fold cyclic)
3D reconstructionResolution: 3.94 Å / Resolution method: FSC 0.143 CUT-OFF / Num. of particles: 158204 / Symmetry type: POINT
Atomic model buildingProtocol: RIGID BODY FIT
RefinementCross valid method: NONE
Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
Displacement parametersBiso mean: 163.25 Å2
Refine LS restraints
Refine-IDTypeDev idealNumber
ELECTRON MICROSCOPYf_bond_d0.003515972
ELECTRON MICROSCOPYf_angle_d0.858321699
ELECTRON MICROSCOPYf_chiral_restr0.05272916
ELECTRON MICROSCOPYf_plane_restr0.00532532
ELECTRON MICROSCOPYf_dihedral_angle_d14.43947869
Refine LS restraints NCS
Ens-IDDom-IDAsym-IDAuth asym-IDRefine-IDTypeRms dev position (Å)
ens_1d_2AAELECTRON MICROSCOPYNCS constraints0.000876743865562
ens_1d_3AAELECTRON MICROSCOPYNCS constraints0.000718701221601
ens_2d_2BCELECTRON MICROSCOPYNCS constraints0.000706080801748
ens_2d_3BCELECTRON MICROSCOPYNCS constraints0.000698623151859

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External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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Yorodumi

Thousand views of thousand structures

  • Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
  • This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
  • The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

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