[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 234 items for (author: lange & f)

EMDB-48313:
PARP1 ART in complex with HPF1 and EB47
Method: single particle / : Sverzhinsky A, Pascal JM

EMDB-45530:
STRUCTURE OF CD4 MIMETIC CJF-III-288 IN COMPLEX WITH BG505 SOSIP.664 HIV-1ENV TRIMER AND 17B FAB
Method: single particle / : Niu L, Tolbert WD, Pazgier M

PDB-9cf5:
STRUCTURE OF CD4 MIMETIC CJF-III-288 IN COMPLEX WITH BG505 SOSIP.664 HIV-1ENV TRIMER AND 17B FAB
Method: single particle / : Niu L, Tolbert WD, Pazgier M

EMDB-53032:
Cryo-EM structure of Upf1-Nmd4-Ebs1 in complex with RNA
Method: single particle / : Iermak I, Wilson Eisele NR, Kurscheidt K, Loukeri MJ, Basquin J, Bonneau F, Langer LM, Keidel A, Conti E

PDB-9qdq:
Cryo-EM structure of Upf1-Nmd4-Ebs1 in complex with RNA
Method: single particle / : Iermak I, Wilson Eisele NR, Kurscheidt K, Loukeri MJ, Basquin J, Bonneau F, Langer LM, Keidel A, Conti E

EMDB-53528:
Tomogram of a PSD95-containing glutamatergic synapse from 'ultra fresh' prepared mouse.
Method: electron tomography / : Peukes J, Frank R, Briggs JAG

EMDB-54246:
Subtomogram average of an ionotropic glutamate receptor within mammalian glutamatergic synapses
Method: subtomogram averaging / : Peukes J, Frank R, Briggs JAG

EMDB-47099:
Structure of a Tick-Borne Flavivirus xrRNA
Method: single particle / : Langeberg CJ, Kieft JS, Sherlock ME, Szucs MJ, Vicens Q

PDB-9dp9:
Structure of a Tick-Borne Flavivirus xrRNA
Method: single particle / : Langeberg CJ, Kieft JS, Sherlock ME, Szucs MJ, Vicens Q

EMDB-45307:
Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome
Method: single particle / : Sherlock ME, Kieft JS

PDB-9c8k:
Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome
Method: single particle / : Sherlock ME, Kieft JS

EMDB-42060:
Cryo-EM structure of prefusion-stabilized influenza B hemagglutinin
Method: single particle / : Juraszek J, Milder FJ, Yu X, Blokland S, Overveld D, Tamara S, Bakkers MJG, Rutten L, Sharma S, Langedijk JPM

EMDB-43273:
Prefusion-stabilized trimer of FluB-HA under low pH conditions
Method: single particle / : Juraszek J, Milder FJ, Yu X, Blokland S, Overveld D, Tamara S, Bakkers MJG, Rutten L, Sharma S, Langedijk JPM

PDB-8uad:
Cryo-EM structure of prefusion-stabilized influenza B hemagglutinin
Method: single particle / : Juraszek J, Milder FJ, Yu X, Blokland S, Overveld D, Tamara S, Bakkers MJG, Rutten L, Sharma S, Langedijk JPM

EMDB-19459:
The human prohibitin complex
Method: subtomogram averaging / : Lange F, Ratz M, Dohrke JN, Wenzel D, Riedel D, Ilgen P, Jakobs S

PDB-8rrh:
The human prohibitin complex
Method: subtomogram averaging / : Lange F, Ratz M, Dohrke JN, Wenzel D, Riedel D, Ilgen P, Jakobs S

EMDB-42794:
Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2
Method: single particle / : Zeinert R, Zhou F, Cavalcanti Franco PH, Zoeller J, Lessen H, Iyer A, Langer JD, Sodt AJ, Storz G, Matthies D

EMDB-42795:
Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2 in C1
Method: single particle / : Zeinert R, Zhou F, Cavalcanti Franco PH, Zoeller J, Lessen H, Iyer A, Langer JD, Sodt AJ, Storz G, Matthies D

EMDB-42796:
Magnesium transporter MgtA monomer from E. coli in 5 mM MgCl2
Method: single particle / : Zeinert R, Zhou F, Cavalcanti Franco PH, Zoeller J, Lessen H, Iyer A, Langer JD, Sodt AJ, Storz G, Matthies D

EMDB-42797:
Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2 and 5 mM ATP
Method: single particle / : Zeinert R, Zhou F, Cavalcanti Franco PH, Zoeller J, Lessen H, Iyer A, Langer JD, Sodt AJ, Storz G, Matthies D

EMDB-42798:
Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2 and 5 mM ATPyS
Method: single particle / : Zeinert R, Zhou F, Cavalcanti Franco PH, Zoeller J, Lessen H, Iyer A, Langer JD, Sodt AJ, Storz G, Matthies D

EMDB-42799:
Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2 and 5 mM ADP
Method: single particle / : Zeinert R, Zhou F, Cavalcanti Franco PH, Zoeller J, Lessen H, Iyer A, Langer JD, Sodt AJ, Storz G, Matthies D

PDB-8uy7:
Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2
Method: single particle / : Zeinert R, Zhou F, Cavalcanti Franco PH, Zoeller J, Lessen H, Iyer A, Langer JD, Sodt AJ, Storz G, Matthies D

PDB-8uy8:
Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2 in C1
Method: single particle / : Zeinert R, Zhou F, Cavalcanti Franco PH, Zoeller J, Lessen H, Iyer A, Langer JD, Sodt AJ, Storz G, Matthies D

PDB-8uy9:
Magnesium transporter MgtA monomer from E. coli in 5 mM MgCl2
Method: single particle / : Zeinert R, Zhou F, Cavalcanti Franco PH, Zoeller J, Lessen H, Iyer A, Langer JD, Sodt AJ, Storz G, Matthies D

PDB-8uya:
Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2 and 5 mM ATP
Method: single particle / : Zeinert R, Zhou F, Cavalcanti Franco PH, Zoeller J, Lessen H, Iyer A, Langer JD, Sodt AJ, Storz G, Matthies D

PDB-8uyb:
Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2 and 5 mM ATPyS
Method: single particle / : Zeinert R, Zhou F, Cavalcanti Franco PH, Zoeller J, Lessen H, Iyer A, Langer JD, Sodt AJ, Storz G, Matthies D

PDB-8uyc:
Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2 and 5 mM ADP
Method: single particle / : Zeinert R, Zhou F, Cavalcanti Franco PH, Zoeller J, Lessen H, Iyer A, Langer JD, Sodt AJ, Storz G, Matthies D

EMDB-51139:
human 80S ribosome bound by a SKI2-exosome complex (60S signal subtracted)
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

EMDB-51132:
human 80S ribosome bound by a SKI2-exosome complex
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

PDB-9g8m:
human 80S ribosome bound by a SKI2-exosome complex
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

EMDB-44117:
Cryo-EM structure of Prefusion RSV F (RSV220975)
Method: single particle / : Yu X, Langedijk JPM

PDB-9b2x:
Cryo-EM structure of Prefusion RSV F (RSV220975)
Method: single particle / : Yu X, Langedijk JPM

EMDB-51133:
80S-bound human Ski2-exosome complex
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

EMDB-51134:
human 40S ribosome bound by a SKI238-exosome complex
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

EMDB-51135:
40S-bound human SKI2-exosome complex
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

EMDB-51136:
40S-bound human SKI238 complex in the open state (Gatekeeping module)
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

EMDB-51137:
human SKI7-SKI238 complex in the open state
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

PDB-9g8n:
80S-bound human Ski2-exosome complex
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

PDB-9g8o:
human 40S ribosome bound by a SKI238-exosome complex
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

PDB-9g8p:
40S-bound human SKI2-exosome complex
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

PDB-9g8q:
40S-bound human SKI238 complex in the open state (Gatekeeping module)
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

PDB-9g8r:
human SKI7-SKI238 complex in the open state
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

EMDB-46646:
HIV-1 BaL Env in complex with CD4 mimetic CJF-III-288 and 17b IgG
Method: subtomogram averaging / : Grunst MW

EMDB-19653:
Structure of the E3 ubiquitin ligase RNF213, determined by cryoEM
Method: single particle / : Naydenova K, Randow F

EMDB-19654:
Human RNF213 (consensus refinement without accounting for flexibility)
Method: single particle / : Naydenova K, Randow F

EMDB-19655:
Human RNF213: focused refinement of ATPase domain
Method: single particle / : Naydenova K, Randow F

EMDB-19656:
Human RNF213: focused refinement of stalk domain
Method: single particle / : Naydenova K, Randow F

EMDB-19657:
Human RNF213: focused refinement of carbohydrate binding module (CBM) domain
Method: single particle / : Naydenova K, Randow F

EMDB-19658:
Human RNF213: focused refinement of E3 ligase domain
Method: single particle / : Naydenova K, Randow F

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more