[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 609 items for (author: hong & ss)

EMDB-72178:
Cereblon Ternary Complex with Blimp1 and compound 5
Method: single particle / : Watson ER, Lander GC

PDB-9q33:
Cereblon Ternary Complex with Blimp1 and compound 5
Method: single particle / : Watson ER

EMDB-63452:
Cryo-EM structure of the cytosolic ARMH2-EFCAB9-CATSPERz subcomplex of the mouse CatSpermasome
Method: single particle / : Zhao Q, Lin S, Xu Q, Wu J

PDB-9lwo:
Cryo-EM structure of the cytosolic ARMH2-EFCAB9-CATSPERz subcomplex of the mouse CatSpermasome
Method: single particle / : Zhao Q, Lin S, Xu Q, Wu J

EMDB-70143:
Cryo-EM structure of human SWELL1-PSA heterocomplex
Method: single particle / : Hagino T, Twomey EC, Qiu Z

PDB-9o5k:
Cryo-EM structure of human SWELL1-PSA heterocomplex
Method: single particle / : Hagino T, Twomey EC, Qiu Z

EMDB-49708:
cryo-EM structure of broad betacoronavirus binding antibody 1871 in complex with OC43 S2 subunit
Method: single particle / : Muthuraman K, Jackman MJ, Julien JP

PDB-9nqz:
cryo-EM structure of broad betacoronavirus binding antibody 1871 in complex with OC43 S2 subunit
Method: single particle / : Muthuraman K, Jackman MJ, Julien JP

EMDB-70077:
Plasmodium falciparum 20S proteasome bound to inhibitor 159
Method: single particle / : Han Y, Deng X, Ray S, Phillips M

EMDB-70078:
Plasmodium falciparum 20S proteasome bound to inhibitor 296
Method: single particle / : Han Y, Deng X, Ray S, Phillips M

PDB-9o3e:
Plasmodium falciparum 20S proteasome bound to inhibitor 159
Method: single particle / : Han Y, Deng X, Ray S, Phillips M

PDB-9o3f:
Plasmodium falciparum 20S proteasome bound to inhibitor 296
Method: single particle / : Han Y, Deng X, Ray S, Phillips M

EMDB-53474:
CryoEM structure of nanodisc-reconstituted human NTCP in complex with grafted NTCP_Nb1 and NabFab
Method: single particle / : Yoon D, Nosol K, Rasouli A, Bang-Soerensen R, Irobalieva RN, Liu H, Tajkhorshid E, Locher KP

PDB-9qzq:
CryoEM structure of nanodisc-reconstituted human NTCP in complex with grafted NTCP_Nb1 and NabFab
Method: single particle / : Yoon D, Nosol K, Rasouli A, Bang-Soerensen R, Irobalieva RN, Liu H, Tajkhorshid E, Locher KP

EMDB-72086:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BCL6-760 (LDD, local refined)
Method: single particle / : Zhu J, Fang W, Pagarigan B

PDB-9q03:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BCL6-760 (LDD, local refined)
Method: single particle / : Zhu J, Fang W, Pagarigan B

EMDB-46727:
Structure of AG11-2F01 Fab in complex with A/Solomon Islands/3/2006 (H1N1) influenza virus hemagglutinin
Method: single particle / : Mou Z, Lei R, Dai X, Wu N

PDB-9dbx:
Structure of AG11-2F01 Fab in complex with A/Solomon Islands/3/2006 (H1N1) influenza virus hemagglutinin
Method: single particle / : Mou Z, Lei R, Dai X, Wu N

EMDB-61859:
Cryo-EM structure of human XPR1 in apo state
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

EMDB-61860:
Cryo-EM structure of apo human XPR1, class 1, with one visible SPX domain
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

EMDB-61861:
Cryo-EM structure of apo human XPR1, class 2, with asymmetrically dimerized SPX domains
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

EMDB-61862:
Cryo-EM structure of apo human XPR1, class 3, with symmetrically dimerized SPX domains
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

EMDB-61863:
Cryo-EM structure of human XPR1 in complex with InsP8
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

EMDB-61864:
Cryo-EM structure of human XPR1 with InsP8 in an 'arch-like' intermediate state of the SPX domain
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

EMDB-61865:
Cryo-EM structure of human XPR1 in a closed state at both the extracellular and intracellular gates, obtained through local refinement
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

EMDB-61866:
Cryo-EM structure of human XPR1 in a closed state at the intracellular gate and an open state at the extracellular gate, obtained through local refinement
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

EMDB-61867:
Cryo-EM structure of human XPR1 in an open state at the intracellular gate and a closed state at the extracellular gate, obtained through local refinement
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

EMDB-61868:
Cryo-EM structure of one subunit of the human XPR1 homodimer with both the intracellular and extracellular gates in an open state, obtained through local refinement
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

EMDB-61869:
Cryo-EM structure of human XPR1-R459C
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

EMDB-61870:
Cryo-EM structure of human XPR1-G621A
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

EMDB-61871:
Cryo-EM structure of human XPR1-R570L
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

EMDB-61872:
Cryo-EM structure of XPR1-KIDINS220 complex
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

EMDB-61873:
Local refinement of SPX and ARs in XPR1-KIDINS220 complex
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

EMDB-61874:
Local refinement of additional KIDINS220 TM-helix in XPR1-KIDINS220 complex
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

EMDB-61875:
Complex of XPR1-KIDINS220
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

EMDB-61876:
Cryo-EM structure of XPR1-KIDINS220-InsP8 complex
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

EMDB-61877:
Cryo-EM structure of Drosophila melanogaster PXo-G604A
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

EMDB-61878:
Cryo-EM structure of Drosophila melanogaster PXo
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

EMDB-61879:
Cryo-EM structure of PHO1
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

PDB-9jxd:
Cryo-EM structure of human XPR1 in apo state
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

PDB-9jxe:
Cryo-EM structure of apo human XPR1, class 1, with one visible SPX domain
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

PDB-9jxf:
Cryo-EM structure of apo human XPR1, class 2, with asymmetrically dimerized SPX domains
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

PDB-9jxg:
Cryo-EM structure of apo human XPR1, class 3, with symmetrically dimerized SPX domains
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

PDB-9jxh:
Cryo-EM structure of human XPR1 in complex with InsP8
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

PDB-9jxi:
Cryo-EM structure of human XPR1 with InsP8 in an 'arch-like' intermediate state of the SPX domain
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

PDB-9jxj:
Cryo-EM structure of human XPR1 in a closed state at both the extracellular and intracellular gates, obtained through local refinement
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

PDB-9jxk:
Cryo-EM structure of human XPR1 in a closed state at the intracellular gate and an open state at the extracellular gate, obtained through local refinement
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

PDB-9jxl:
Cryo-EM structure of human XPR1 in an open state at the intracellular gate and a closed state at the extracellular gate, obtained through local refinement
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

PDB-9jxm:
Cryo-EM structure of one subunit of the human XPR1 homodimer with both the intracellular and extracellular gates in an open state, obtained through local refinement
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

PDB-9jxn:
Cryo-EM structure of human XPR1-R459C
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more