PDB: 681 resultsInfo pagesStatus searchChemie searchBIRD

---

7ZEK	Structure of a hybrid-type G-quadruplex with a snapback loop (hybrid 1R') Descriptor: DNA (5'-D(*(DG5)P*GP*CP*TP*AP*(BG)P*GP*GP*TP*CP*AP*GP*GP*GP*TP*GP*GP*GP*TP*CP*AP*(DG3))-3') Authors: Jana, J, Vianney, Y.M, Schroeder, N, Weisz, K. Deposit date: 2022-03-31 Release date: 2022-06-22 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: Guiding the folding of G-quadruplexes through loop residue interactions. Nucleic Acids Res., 50, 2022
7ZUR	Four carbons pendant pyridine derivative of the natural alkaloid Berberine as Human Telomeric G-quadruplex Binder Descriptor: 16,17-dimethoxy-21-(4-pyridin-4-ylbutyl)-5,7-dioxa-13$l^{4}-azapentacyclo[11.8.0.0^{2,10}.0^{4,8}.0^{15,20}]henicosa-1(21),2(10),3,8,13,15,17,19-octaene, DNA TAGGGTTAGGGT, POTASSIUM ION Authors: Bazzicalupi, C, Ferraroni, M, Gratteri, P, Papi, F. Deposit date: 2022-05-13 Release date: 2022-12-07 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Probing the Efficiency of 13-Pyridylalkyl Berberine Derivatives to Human Telomeric G-Quadruplexes Binding: Spectroscopic, Solid State and In Silico Analysis. Int J Mol Sci, 23, 2022
8AAD	Two carbons pendant pyridine derivative of the natural alkaloid Berberine as Human Telomeric G-quadruplex Binder Descriptor: 16,17-dimethoxy-21-(2-pyridin-4-ylethyl)-5,7-dioxa-13$l^{4}-azapentacyclo[11.8.0.0^{2,10}.0^{4,8}.0^{15,20}]henicosa-1(13),2,4(8),9,14,16,18,20-octaene, DNA TAGGGTTAGGGT, POTASSIUM ION Authors: Ferraroni, M, Bazzicalupi, C, Gratteri, P, Papi, F. Deposit date: 2022-07-01 Release date: 2022-12-07 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.04 Å) Cite: Probing the Efficiency of 13-Pyridylalkyl Berberine Derivatives to Human Telomeric G-Quadruplexes Binding: Spectroscopic, Solid State and In Silico Analysis. Int J Mol Sci, 23, 2022
2MB2	parallel-stranded G-quadruplex in DNA poly-G stretches Descriptor: DNA_(5'-D(*TP*TP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*T)-3') Authors: Sengar, A, Heddi, B, Phan, A.T. Deposit date: 2013-07-24 Release date: 2014-12-03 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Formation of g-quadruplexes in poly-g sequences: structure of a propeller-type parallel-stranded g-quadruplex formed by a g15 stretch. Biochemistry, 53, 2014
2JPZ	Human telomere DNA quadruplex structure in K+ solution hybrid-2 form Descriptor: DNA (26-MER) Authors: Dai, J, Carver, M, Punchihewa, C, Jones, R, Yang, D. Deposit date: 2007-05-25 Release date: 2007-12-04 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structure of the Hybrid-2 type intramolecular human telomeric G-quadruplex in K+ solution: insights into structure polymorphism of the human telomeric sequence Nucleic Acids Res., 35, 2007
2AWE	Base-Tetrad Swapping Results in Dimerization of RNA Quadruplexes: Implications for Formation of I-Motif RNA Octaplex Descriptor: 5'-R(*UP*(BGM)P*GP*UP*GP*U)-3', POTASSIUM ION, STRONTIUM ION Authors: Pan, B, Shi, K, Sundaralingam, M. Deposit date: 2005-08-31 Release date: 2006-02-07 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Base-tetrad swapping results in dimerization of RNA quadruplexes: implications for formation of the i-motif RNA octaplex. Proc.Natl.Acad.Sci.Usa, 103, 2006
2MB3	Solution structure of an intramolecular (3+1) human telomeric G-quadruplex bound to a telomestatin derivative Descriptor: (12S,27S)-12,27-bis(4-aminobutyl)-4,30-dimethyl-3,7,14,18,22,29-hexaoxa-11,26,31,32,33,34,35,36-octaazaheptacyclo[26.2. 1.1~2,5~.1~6,9~.1~13,16~.1~17,20~.1~21,24~]hexatriaconta-1(30),2(36),4,6(35),8,13(34),15,17(33),19,21(32),23,28(31)-dode caene-10,25-dione, DNA_(5'-D(*TP*TP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*A)-3') Authors: Chung, W.J, Heddi, B, Tera, M, Iida, K, Nagasawa, K, Phan, A.T. Deposit date: 2013-07-24 Release date: 2013-08-28 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution structure of an intramolecular (3 + 1) human telomeric g-quadruplex bound to a telomestatin derivative. J.Am.Chem.Soc., 135, 2013
2L7V	Quindoline/G-quadruplex complex Descriptor: DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3'), N,N-diethyl-N'-(10H-indolo[3,2-b]quinolin-11-yl)ethane-1,2-diamine, POTASSIUM ION Authors: Dai, J, Carver, M, Mathad, R, Yang, D. Deposit date: 2010-12-23 Release date: 2011-11-09 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Solution Structure of a 2:1 Quindoline-c-MYC G-Quadruplex: Insights into G-Quadruplex-Interactive Small Molecule Drug Design. J.Am.Chem.Soc., 133, 2011
2KYO	Dimeric human ckit-2 proto-oncogene promoter quadruplex DNA NMR, 10 structures Descriptor: 5'-D(*CP*GP*GP*GP*CP*GP*GP*GP*CP*GP*CP*GP*AP*GP*GP*GP*AP*GP*GP*GP*T)-3' Authors: Kuryavyi, V, Phan, A.T, Patel, D.J. Deposit date: 2010-06-05 Release date: 2010-06-30 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Solution structures of all parallel-stranded monomeric and dimeric G-quadruplex scaffolds of the human c-kit2 promoter. Nucleic Acids Res., 38, 2010
2KYP	Monomeric Human CKIT-2 proto-oncogene promoter quadruplex DNA NMR, 12 structures Descriptor: 5'-D(*CP*GP*GP*GP*CP*GP*GP*GP*CP*GP*CP*TP*AP*GP*GP*GP*AP*GP*GP*GP*T)-3' Authors: Kuryavyi, V, Phan, A.T, Patel, D.J. Deposit date: 2010-06-06 Release date: 2010-06-30 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Solution structures of all parallel-stranded monomeric and dimeric G-quadruplex scaffolds of the human c-kit2 promoter. Nucleic Acids Res., 38, 2010
2MB4	Solution structure of a stacked dimeric G-quadruplex formed by a segment of the human CEB1 minisatellite Descriptor: DNA_(5'-D(*AP*GP*GP*GP*GP*GP*GP*AP*GP*GP*GP*AP*GP*GP*GP*TP*GP*G)-3') Authors: Adrian, M, Ang, D.J, Lech, C, Heddi, B, Nicolas, A, Phan, A.T. Deposit date: 2013-07-25 Release date: 2014-05-28 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structure and Conformational Dynamics of a Stacked Dimeric G-Quadruplex Formed by the Human CEB1 Minisatellite. J.Am.Chem.Soc., 136, 2014
2KF7	Structure of a two-G-tetrad basket-type intramolecular G-quadruplex formed by human telomeric repeats in K+ solution (with G7-to-BRG substitution) Descriptor: HUMAN TELOMERE DNA Authors: Lim, K.W, Amrane, S, Bouaziz, S, Xu, W, Mu, Y, Patel, D.J, Luu, K.N, Phan, A.T. Deposit date: 2009-02-12 Release date: 2009-03-24 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structure of the human telomere in K+ solution: a stable basket-type G-quadruplex with only two G-tetrad layers J.Am.Chem.Soc., 131, 2009
2KF8	Structure of a two-G-tetrad basket-type intramolecular G-quadruplex formed by human telomeric repeats in K+ solution Descriptor: HUMAN TELOMERE DNA Authors: Lim, K.W, Amrane, S, Bouaziz, S, Xu, W, Mu, Y, Patel, D.J, Luu, K.N, Phan, A.T. Deposit date: 2009-02-12 Release date: 2009-03-24 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structure of the human telomere in K+ solution: a stable basket-type G-quadruplex with only two G-tetrad layers J.Am.Chem.Soc., 131, 2009
7E5P	Aptamer enhancing peroxidase activity of myoglobin Descriptor: DNA (5'-D(*GP*GP*GP*TP*GP*GP*GP*TP*TP*GP*GP*GP*AP*GP*GP*G)-3') Authors: Tsukakoshi, K, Matsugami, A, Khunathai, K, Kanazashi, M, Yamagishi, Y, Nakama, K, Oshikawa, D, Hayashi, F, Kuno, H, Ikebukuro, K. Deposit date: 2021-02-19 Release date: 2021-06-16 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: G-quadruplex-forming aptamer enhances the peroxidase activity of myoglobin against luminol. Nucleic Acids Res., 49, 2021
7DO1	Solution structure of a heteromolecular telomeric (3+1) G-quadruplex containing right loop progression Descriptor: DNA (5'-D(*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3'), DNA (5'-D(*TP*TP*AP*GP*GP*G)-3') Authors: Fu, W.Q, Jing, H.T, Zhang, N. Deposit date: 2020-12-11 Release date: 2021-09-29 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Two coexisting pseudo-mirror heteromolecular telomeric G-quadruplexes in opposite loop progressions differentially recognized by a low equivalent of Thioflavin T. Nucleic Acids Res., 49, 2021
2M18	Structure of stacked G-quadruplex formed by human TERRA sequence in potassium solution Descriptor: RNA (5'-R(*GP*GP*GP*UP*UP*AP*GP*GP*GP*U)-3') Authors: Martadinata, H, Phan, A.T. Deposit date: 2012-11-20 Release date: 2013-04-17 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structure of Human Telomeric RNA (TERRA): Stacking of Two G-Quadruplex Blocks in K(+) Solution Biochemistry, 52, 2013
2LED	Unique structural features of interconverting monomeric and dimeric G-quadruplexes adopted by a sequence from intron of N-myc gene Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*CP*GP*GP*GP*AP*GP*GP*GP*AP*GP*GP*GP*AP*A)-3') Authors: Trajkovski, M, Plavec, J, Webba da Silva, M. Deposit date: 2011-06-15 Release date: 2012-03-14 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Unique Structural Features of Interconverting Monomeric and Dimeric G-Quadruplexes Adopted by a Sequence from the Intron of the N-myc Gene. J.Am.Chem.Soc., 134, 2012
2LEE	Unique structural features of interconverting monomeric and dimeric G-quadruplexes adopted by a sequence from intron of N-myc gene Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*CP*GP*GP*GP*AP*GP*GP*GP*AP*GP*GP*GP*AP*A)-3') Authors: Trajkovski, M, Plavec, J, Webba da Silva, M. Deposit date: 2011-06-15 Release date: 2012-03-14 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Unique Structural Features of Interconverting Monomeric and Dimeric G-Quadruplexes Adopted by a Sequence from the Intron of the N-myc Gene. J.Am.Chem.Soc., 134, 2012
2KBP	Solution structure of a G-quadruplex of human telomeric RNA Descriptor: 5'-R(*UP*AP*GP*GP*GP*UP*UP*AP*GP*GP*GP*U)-3' Authors: Phan, A.T, Martadinata, H. Deposit date: 2008-12-05 Release date: 2009-03-24 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Structure of propeller-type parallel-stranded RNA G-quadruplexes, formed by human telomeric RNA sequences in K+ solution. J.Am.Chem.Soc., 131, 2009
2KZD	Structure of a (3+1) G-quadruplex formed by hTERT promoter sequence Descriptor: DNA (5'-D(*AP*GP*GP*GP*IP*AP*GP*GP*GP*GP*CP*TP*GP*GP*GP*AP*GP*GP*GP*C)-3') Authors: Lim, K.W, Lacroix, L, Yue, D.J.E, Lim, J.K.C, Lim, J.M.W, Phan, A.T. Deposit date: 2010-06-16 Release date: 2010-10-06 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Coexistence of two distinct G-quadruplex conformations in the hTERT promoter J.Am.Chem.Soc., 132, 2010
2KZE	Structure of an all-parallel-stranded G-quadruplex formed by hTERT promoter sequence Descriptor: DNA (5'-D(*AP*IP*GP*GP*GP*AP*GP*GP*GP*IP*CP*TP*GP*GP*GP*AP*GP*GP*GP*C)-3') Authors: Lim, K.W, Lacroix, L, Yue, D.J.E, Lim, J.K.C, Lim, J.M.W, Phan, A.T. Deposit date: 2010-06-16 Release date: 2010-10-06 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Coexistence of two distinct G-quadruplex conformations in the hTERT promoter J.Am.Chem.Soc., 132, 2010
2LE6	Structure of a dimeric all-parallel-stranded G-quadruplex stacked via the 5'-to-5' interface Descriptor: DNA (5'-D(*GP*IP*GP*TP*GP*GP*GP*TP*GP*GP*GP*TP*GP*GP*GP*T)-3') Authors: Do, N.Q, Lim, K.W, Teo, M.H, Heddi, B, Phan, A.T. Deposit date: 2011-06-10 Release date: 2011-08-31 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Stacking of G-quadruplexes: NMR structure of a G-rich oligonucleotide with potential anti-HIV and anticancer activity Nucleic Acids Res., 2011
2LXV	Dimeric pil-e g-quadruplex dna from neisseria gonorrhoeae, NMR 11 structures Descriptor: 5'-D(*GP*GP*GP*TP*GP*GP*GP*TP*TP*GP*GP*GP*TP*GP*GP Authors: Kuryavyi, V, Patel, D.J. Deposit date: 2012-08-31 Release date: 2012-11-28 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: RecA-Binding pilE G4 Sequence Essential for Pilin Antigenic Variation Forms Monomeric and 5' End-Stacked Dimeric Parallel G-Quadruplexes. Structure, 20, 2012
2LXQ	Monomeric PilE G-Quadruplex DNA from Neisseria Gonorrhoeae Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*TP*GP*GP*GP*TP*GP*GP*GP*GP*AP*AP*T)-3') Authors: Kuryavyi, V.V, Patel, D.J. Deposit date: 2012-08-30 Release date: 2012-11-28 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: RecA-Binding pilE G4 Sequence Essential for Pilin Antigenic Variation Forms Monomeric and 5' End-Stacked Dimeric Parallel G-Quadruplexes. Structure, 20, 2012
2LA5	RNA Duplex-Quadruplex Junction Complex with FMRP RGG peptide Descriptor: Fragile X mental retardation 1 protein, RNA (36-MER) Authors: Phan, A, Kuryavyi, V, Darnell, J, Serganov, A, Majumdar, A, Ilin, S, Darnell, R, Patel, D. Deposit date: 2011-03-03 Release date: 2011-06-08 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structure-function studies of FMRP RGG peptide recognition of an RNA duplex-quadruplex junction. Nat.Struct.Mol.Biol., 18, 2011

<567891011121314151617181920>