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PDB: 124 results
2H1M
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BU of 2h1m by Molmil
Synthesis, Oxidation Behavior, Crystallization and Structure of 2'-Methylseleno Guanosine Containing RNAs
Descriptor: 5'-R(*GP*CP*AP*(XUG)P*AP*GP*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3', SULFATE ION
Authors:Serganov, A.A.
Deposit date:2006-05-16
Release date:2006-07-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Synthesis, Oxidation Behavior, Crystallization and Structure of 2'-Methylseleno Guanosine Containing RNAs.
J.Am.Chem.Soc., 128, 2006
7SP3
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BU of 7sp3 by Molmil
E. coli RppH bound to Ap4A
Descriptor: BIS(ADENOSINE)-5'-TETRAPHOSPHATE, CHLORIDE ION, FLUORIDE ION, ...
Authors:Serganov, A.A, Vasilyev, N, Nuthanakanti, A.
Deposit date:2021-11-02
Release date:2022-03-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A distinct RNA recognition mechanism governs Np 4 decapping by RppH.
Proc.Natl.Acad.Sci.USA, 119, 2022
2GDI
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BU of 2gdi by Molmil
Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate
Descriptor: MAGNESIUM ION, POTASSIUM ION, SODIUM ION, ...
Authors:Serganov, A.
Deposit date:2006-03-16
Release date:2006-07-04
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch.
Nature, 441, 2006
1YKV
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BU of 1ykv by Molmil
Crystal structure of the Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene
Descriptor: (3AS,9AS)-2-PENTYL-4-HYDROXYMETHYL-3A,4,9,9A-TETRAHYDRO-4,9[1',2']-BENZENO-1H-BENZ[F]ISOINDOLE-1,3(2H)-DIONE, Diels-Alder ribozyme, MAGNESIUM ION
Authors:Serganov, A, Keiper, S, Malinina, L, Tereshko, V, Skripkin, E, Hobartner, C, Polonskaia, A, Phan, A.T, Wombacher, R, Micura, R, Dauter, Z, Jaschke, A, Patel, D.J.
Deposit date:2005-01-18
Release date:2005-02-22
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural basis for Diels-Alder ribozyme-catalyzed carbon-carbon bond formation.
Nat.Struct.Mol.Biol., 12, 2005
1YKQ
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BU of 1ykq by Molmil
Crystal structure of Diels-Alder ribozyme
Descriptor: CADMIUM ION, Diels-Alder ribozyme, MAGNESIUM ION
Authors:Serganov, A, Keiper, S, Malinina, L, Tereshko, V, Skripkin, E, Hobartner, C, Polonskaia, A, Phan, A.T, Wombacher, R, Micura, R, Dauter, Z, Jaschke, A, Patel, D.J.
Deposit date:2005-01-18
Release date:2005-02-22
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural basis for Diels-Alder ribozyme-catalyzed carbon-carbon bond formation.
Nat.Struct.Mol.Biol., 12, 2005
1YLS
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BU of 1yls by Molmil
Crystal structure of selenium-modified Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene
Descriptor: (3AS,9AS)-2-PENTYL-4-HYDROXYMETHYL-3A,4,9,9A-TETRAHYDRO-4,9[1',2']-BENZENO-1H-BENZ[F]ISOINDOLE-1,3(2H)-DIONE, MAGNESIUM ION, RNA Diels-Alder ribozyme
Authors:Serganov, A, Keiper, S, Malinina, L, Tereshko, V, Skripkin, E, Hobartner, C, Polonskaia, A, Phan, A.T, Wombacher, R, Micura, R, Dauter, Z, Jaschke, A, Patel, D.J.
Deposit date:2005-01-19
Release date:2005-02-22
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis for Diels-Alder ribozyme-catalyzed carbon-carbon bond formation.
Nat.Struct.Mol.Biol., 12, 2005
4GXY
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BU of 4gxy by Molmil
RNA structure
Descriptor: Adenosylcobalamin, Adenosylcobalamin riboswitch, IRIDIUM HEXAMMINE ION, ...
Authors:Serganov, A, Peselis, A.
Deposit date:2012-09-04
Release date:2012-10-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Structural insights into ligand binding and gene expression control by an adenosylcobalamin riboswitch.
Nat.Struct.Mol.Biol., 19, 2012
1Y26
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BU of 1y26 by Molmil
A-riboswitch-adenine complex
Descriptor: ADENINE, MAGNESIUM ION, Vibrio vulnificus A-riboswitch
Authors:Serganov, A, Yuan, Y.R, Patel, D.J.
Deposit date:2004-11-20
Release date:2004-12-28
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Basis for Discriminative Regulation of Gene Expression by Adenine- and Guanine-Sensing mRNAs
Chem.Biol., 11, 2004
1Y27
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BU of 1y27 by Molmil
G-riboswitch-guanine complex
Descriptor: Bacillus subtilis xpt, GUANINE
Authors:Serganov, A, Yuan, Y.R, Patel, D.J.
Deposit date:2004-11-20
Release date:2004-12-28
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Basis for Discriminative Regulation of Gene Expression by Adenine- and Guanine-Sensing mRNAs
Chem.Biol., 11, 2004
3DIM
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BU of 3dim by Molmil
Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, Cs+ Soak
Descriptor: CESIUM ION, ISOPROPYL ALCOHOL, LYSINE, ...
Authors:Serganov, A.A.
Deposit date:2008-06-20
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature, 455, 2008
3DJ2
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BU of 3dj2 by Molmil
Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, Tl+ Soak
Descriptor: ISOPROPYL ALCOHOL, LYSINE, RNA (174-MER), ...
Authors:Serganov, A.A.
Deposit date:2008-06-21
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature, 455, 2008
3DIX
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BU of 3dix by Molmil
Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, K+ anomalous data
Descriptor: LYSINE, POTASSIUM ION, RNA (174-MER), ...
Authors:Serganov, A.A.
Deposit date:2008-06-21
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature, 455, 2008
3DIR
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BU of 3dir by Molmil
Crystallization of the Thermotoga maritima lysine riboswitch bound to N6-1-iminoethyl-L-Lysine
Descriptor: N~6~-[(1Z)-ethanimidoyl]-L-lysine, POTASSIUM ION, RNA (174-MER), ...
Authors:Serganov, A.A.
Deposit date:2008-06-20
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature, 455, 2008
3DIL
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BU of 3dil by Molmil
Crystal structure of the Thermotoga maritima lysine riboswitch bound to lysine
Descriptor: ISOPROPYL ALCOHOL, LYSINE, MAGNESIUM ION, ...
Authors:Serganov, A.A.
Deposit date:2008-06-20
Release date:2008-09-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature, 455, 2008
3DJ0
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BU of 3dj0 by Molmil
Crystallization of the Thermotoga maritima lysine riboswitch bound to L-4-oxalysine
Descriptor: O-(2-aminoethyl)-L-serine, POTASSIUM ION, RNA (174-MER), ...
Authors:Serganov, A.A.
Deposit date:2008-06-21
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature, 455, 2008
3DIS
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BU of 3dis by Molmil
Crystallization of the Thermotoga maritima lysine riboswitch in free form
Descriptor: ISOPROPYL ALCOHOL, RNA (174-MER), SODIUM ION
Authors:Serganov, A.A.
Deposit date:2008-06-20
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature, 455, 2008
3DIY
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BU of 3diy by Molmil
Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, Mn2+ soak
Descriptor: LYSINE, MANGANESE (II) ION, POTASSIUM ION, ...
Authors:Serganov, A.A.
Deposit date:2008-06-21
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature, 455, 2008
3DIQ
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BU of 3diq by Molmil
Crystallization of the Thermotoga maritima lysine riboswitch bound to homoarginine
Descriptor: L-HOMOARGININE, PENTAETHYLENE GLYCOL, POTASSIUM ION, ...
Authors:serganov, A.A.
Deposit date:2008-06-20
Release date:2008-09-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature, 455, 2008
3DIZ
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BU of 3diz by Molmil
Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine in the Absence of Mg2+
Descriptor: LYSINE, POTASSIUM ION, RNA (174-MER), ...
Authors:Serganov, A.A.
Deposit date:2008-06-21
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature, 455, 2008
3DIG
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BU of 3dig by Molmil
CRYSTAL STRUCTURE OF THE THERMOTOGA MARITIMA LYSINE RIBOSWITCH BOUND TO S-(2-aminoethyl)-L-cysteine
Descriptor: ISOPROPYL ALCOHOL, L-THIALYSINE, POTASSIUM ION, ...
Authors:Serganov, A.A.
Deposit date:2008-06-20
Release date:2008-09-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature, 455, 2008
3DIO
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BU of 3dio by Molmil
Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, IRIDIUM HEXAMINE SOAK
Descriptor: IRIDIUM HEXAMMINE ION, LYSINE, PENTAETHYLENE GLYCOL, ...
Authors:Serganov, A.A.
Deposit date:2008-06-20
Release date:2008-09-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature, 455, 2008
3F30
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BU of 3f30 by Molmil
Crystal structure of the FMN riboswitch bound to FMN, cobalt hexammine soak.
Descriptor: COBALT HEXAMMINE(III), FLAVIN MONONUCLEOTIDE, FMN riboswitch, ...
Authors:Serganov, A.A, Huang, L.
Deposit date:2008-10-30
Release date:2009-01-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Coenzyme recognition and gene regulation by a flavin mononucleotide riboswitch.
Nature, 458, 2009
3F4E
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BU of 3f4e by Molmil
Crystal structure of the FMN riboswitch bound to FMN, split RNA.
Descriptor: FLAVIN MONONUCLEOTIDE, FMN riboswitch, MAGNESIUM ION, ...
Authors:Serganov, A.A, Huang, L.
Deposit date:2008-10-31
Release date:2009-01-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Coenzyme recognition and gene regulation by a flavin mononucleotide riboswitch.
Nature, 458, 2009
3F2W
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BU of 3f2w by Molmil
Crystal structure of the FMn riboswitch bound to FMN, Ba2+ soak.
Descriptor: BARIUM ION, FLAVIN MONONUCLEOTIDE, FMN riboswitch, ...
Authors:Serganov, A.A, Huang, L.
Deposit date:2008-10-30
Release date:2009-01-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Coenzyme recognition and gene regulation by a flavin mononucleotide riboswitch.
Nature, 458, 2009
3F4H
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BU of 3f4h by Molmil
Crystal structure of the FMN riboswitch bound to roseoflavin
Descriptor: 1-deoxy-1-[8-(dimethylamino)-7-methyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl]-D-ribitol, FMN riboswitch, MAGNESIUM ION, ...
Authors:Serganov, A.A, Huang, L.
Deposit date:2008-10-31
Release date:2009-01-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3 Å)
Cite:Coenzyme recognition and gene regulation by a flavin mononucleotide riboswitch.
Nature, 458, 2009

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PDB entries from 2024-04-24

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