1YKQ

Crystal structure of Diels-Alder ribozyme

Summary for 1YKQ

Related1ykv 1yls
DescriptorDiels-Alder ribozyme, CADMIUM ION, MAGNESIUM ION, ... (4 entities in total)
Functional Keywordscarbon-carbon bond, catalytic mechanism, rna crystal structure, diels-alder reaction, ribozyme, rna
Total number of polymer chains4
Total molecular weight32251.15
Authors
Serganov, A.,Keiper, S.,Malinina, L.,Tereshko, V.,Skripkin, E.,Hobartner, C.,Polonskaia, A.,Phan, A.T.,Wombacher, R.,Micura, R.,Dauter, Z.,Jaschke, A.,Patel, D.J. (deposition date: 2005-01-18, release date: 2005-02-22, Last modification date: 2011-07-13)
Primary citation
Serganov, A.,Keiper, S.,Malinina, L.,Tereshko, V.,Skripkin, E.,Hobartner, C.,Polonskaia, A.,Phan, A.T.,Wombacher, R.,Micura, R.,Dauter, Z.,Jaschke, A.,Patel, D.J.
Structural basis for Diels-Alder ribozyme-catalyzed carbon-carbon bond formation.
Nat.Struct.Mol.Biol., 12:218-224, 2005
PubMed: 15723077 (PDB entries with the same primary citation)
DOI: 10.1038/nsmb906
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (3.5 Å)
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Structure validation

RfreeClashscoreRSRZ outliersRNA backbone0.3353700.23MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 1ykq
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Molmil generated image of 1ykq
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Molmil generated image of 1ykq
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More Biological unit images

Molmil generated image of 1ykq
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Molmil generated image of 1ykq
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Molmil generated image of 1ykq
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(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (1ykq.pdb2.gz [18.8 KB])
Coordinate files for Biological unit (1ykq.pdb1.gz [18.79 KB])
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