Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1DKS
DownloadVisualize
BU of 1dks by Molmil
CKSHS1: HUMAN CYCLIN DEPENDENT KINASE SUBUNIT, TYPE 1 IN COMPLEX WITH PHOSPHATE
Descriptor: CYCLIN DEPENDENT KINASE SUBUNIT, TYPE 1, PHOSPHATE ION
Authors:Bourne, Y, Arvai, A.S, Tainer, J.A.
Deposit date:1995-11-22
Release date:1996-03-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of the human cell cycle protein CksHs1: single domain fold with similarity to kinase N-lobe domain.
J.Mol.Biol., 249, 1995
7USL
DownloadVisualize
BU of 7usl by Molmil
Integrin alphaM/beta2 ectodomain in complex with adenylate cyclase toxin RTX751 and M1F5 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Goldsmith, J.A, McLellan, J.S.
Deposit date:2022-04-25
Release date:2022-08-17
Last modified:2022-09-14
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structural basis for non-canonical integrin engagement by Bordetella adenylate cyclase toxin.
Cell Rep, 40, 2022
7USM
DownloadVisualize
BU of 7usm by Molmil
Integrin alphaM/beta2 ectodomain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Goldsmith, J.A, McLellan, J.S.
Deposit date:2022-04-25
Release date:2022-08-17
Last modified:2022-09-14
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structural basis for non-canonical integrin engagement by Bordetella adenylate cyclase toxin.
Cell Rep, 40, 2022
1E4I
DownloadVisualize
BU of 1e4i by Molmil
2-deoxy-2-fluoro-beta-D-glucosyl/enzyme intermediate complex of the beta-glucosidase from Bacillus polymyxa
Descriptor: 2,4-dinitrophenyl 2-deoxy-2-fluoro-beta-D-glucopyranoside, 2-deoxy-2-fluoro-alpha-D-glucopyranose, BETA-GLUCOSIDASE
Authors:Sanz-Aparicio, J, Gonzalez, B, Hermoso, J.A, Arribas, J.C, Canada, F.J, Polaina, J.
Deposit date:2000-07-06
Release date:2001-07-05
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis of Increased Resistance to Thermal Denaturation Induced by Single Amino Acid Substitution in the Sequence of Beta-Glucosidase a from Bacillus Polymyxa.
Proteins: Struct.,Funct., Genet., 33, 1998
1DRS
DownloadVisualize
BU of 1drs by Molmil
THREE-DIMENSIONAL STRUCTURE OF THE RGD-CONTAINING NEUROTOXIN HOMOLOGUE, DENDROASPIN
Descriptor: DENDROASPIN
Authors:Sutcliffe, M.J, Jaseja, M, Hyde, E.I, Lu, X, Williams, J.A.
Deposit date:1994-09-29
Release date:1994-12-20
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Three-dimensional structure of the RGD-containing neurotoxin homologue dendroaspin.
Nat.Struct.Biol., 1, 1994
1DCO
DownloadVisualize
BU of 1dco by Molmil
DCOH, A BIFUNCTIONAL PROTEIN-BINDING TRANSCRIPTIONAL COACTIVATOR
Descriptor: DCOH
Authors:Cronk, J.D, Endrizzi, J.A, Alber, T.
Deposit date:1996-05-16
Release date:1996-12-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:High-resolution structures of the bifunctional enzyme and transcriptional coactivator DCoH and its complex with a product analogue.
Protein Sci., 5, 1996
1DCP
DownloadVisualize
BU of 1dcp by Molmil
DCOH, A BIFUNCTIONAL PROTEIN-BINDING TRANSCRIPTIONAL COACTIVATOR, COMPLEXED WITH BIOPTERIN
Descriptor: 7,8-DIHYDROBIOPTERIN, DCOH
Authors:Cronk, J.D, Endrizzi, J.A, Alber, T.
Deposit date:1996-05-16
Release date:1996-12-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:High-resolution structures of the bifunctional enzyme and transcriptional coactivator DCoH and its complex with a product analogue.
Protein Sci., 5, 1996
1EC7
DownloadVisualize
BU of 1ec7 by Molmil
E. COLI GLUCARATE DEHYDRATASE NATIVE ENZYME
Descriptor: GLUCARATE DEHYDRATASE, ISOPROPYL ALCOHOL, MAGNESIUM ION
Authors:Gulick, A.M, Hubbard, B.K, Gerlt, J.A, Rayment, I.
Deposit date:2000-01-25
Release date:2000-05-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Evolution of enzymatic activities in the enolase superfamily: crystallographic and mutagenesis studies of the reaction catalyzed by D-glucarate dehydratase from Escherichia coli.
Biochemistry, 39, 2000
1ECQ
DownloadVisualize
BU of 1ecq by Molmil
E. COLI GLUCARATE DEHYDRATASE BOUND TO 4-DEOXYGLUCARATE
Descriptor: 4-DEOXYGLUCARATE, GLUCARATE DEHYDRATASE, ISOPROPYL ALCOHOL, ...
Authors:Gulick, A.M, Hubbard, B.K, Gerlt, J.A, Rayment, I.
Deposit date:2000-01-25
Release date:2000-05-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Evolution of enzymatic activities in the enolase superfamily: crystallographic and mutagenesis studies of the reaction catalyzed by D-glucarate dehydratase from Escherichia coli.
Biochemistry, 39, 2000
1EMH
DownloadVisualize
BU of 1emh by Molmil
CRYSTAL STRUCTURE OF HUMAN URACIL-DNA GLYCOSYLASE BOUND TO UNCLEAVED SUBSTRATE-CONTAINING DNA
Descriptor: DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*(P2U)P*AP*TP*CP*TP*T)-3'), URACIL-DNA GLYCOSYLASE
Authors:Parikh, S.S, Slupphaug, G, Krokan, H.E, Blackburn, G.M, Tainer, J.A.
Deposit date:2000-03-16
Release date:2000-05-16
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Uracil-DNA glycosylase-DNA substrate and product structures: conformational strain promotes catalytic efficiency by coupled stereoelectronic effects.
Proc.Natl.Acad.Sci.USA, 97, 2000
7UMO
DownloadVisualize
BU of 7umo by Molmil
Structure of Unc119-inhibitor complex.
Descriptor: (3s,5s,7s)-N-(4,5-dichloropyridin-2-yl)adamantane-1-carboxamide, GLYCEROL, Protein unc-119 homolog A
Authors:Srivastava, D, Sebag, J.A, Artemyev, N.O.
Deposit date:2022-04-07
Release date:2023-07-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Insulin sensitization by small molecules enhancing GLUT4 translocation.
Cell Chem Biol, 30, 2023
1EC8
DownloadVisualize
BU of 1ec8 by Molmil
E. COLI GLUCARATE DEHYDRATASE BOUND TO PRODUCT 2,3-DIHYDROXY-5-OXO-HEXANEDIOATE
Descriptor: 2,3-DIHYDROXY-5-OXO-HEXANEDIOATE, GLUCARATE DEHYDRATASE, ISOPROPYL ALCOHOL, ...
Authors:Gulick, A.M, Hubbard, B.K, Gerlt, J.A, Rayment, I.
Deposit date:2000-01-25
Release date:2000-05-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Evolution of enzymatic activities in the enolase superfamily: crystallographic and mutagenesis studies of the reaction catalyzed by D-glucarate dehydratase from Escherichia coli.
Biochemistry, 39, 2000
1EM1
DownloadVisualize
BU of 1em1 by Molmil
X-RAY CRYSTAL STRUCTURE FOR HUMAN MANGANESE SUPEROXIDE DISMUTASE, Q143A
Descriptor: MANGANESE (II) ION, MANGANESE SUPEROXIDE DISMUTASE, SULFATE ION
Authors:Leveque, V, Stroupe, M.E, Lepock, J.R, Cabelli, D.E, Tainer, J.A, Nick, H.S, Silverman, D.N.
Deposit date:2000-03-14
Release date:2000-03-24
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Multiple replacements of glutamine 143 in human manganese superoxide dismutase: effects on structure, stability, and catalysis.
Biochemistry, 39, 2000
6XKL
DownloadVisualize
BU of 6xkl by Molmil
SARS-CoV-2 HexaPro S One RBD up
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Wrapp, D, Hsieh, C.-L, Goldsmith, J.A, McLellan, J.S.
Deposit date:2020-06-26
Release date:2020-07-15
Last modified:2020-09-30
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Structure-based design of prefusion-stabilized SARS-CoV-2 spikes.
Science, 369, 2020
1EMJ
DownloadVisualize
BU of 1emj by Molmil
URACIL-DNA GLYCOSYLASE BOUND TO DNA CONTAINING A 4'-THIO-2'DEOXYURIDINE ANALOG PRODUCT
Descriptor: DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*(ASU)P*AP*TP*CP*TP*T)-3'), URACIL, ...
Authors:Parikh, S.S, Walcher, G, Jones, G.D, Slupphaug, G, Krokan, H.E, Blackburn, G.M, Tainer, J.A.
Deposit date:2000-03-16
Release date:2000-05-16
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Uracil-DNA glycosylase-DNA substrate and product structures: conformational strain promotes catalytic efficiency by coupled stereoelectronic effects.
Proc.Natl.Acad.Sci.USA, 97, 2000
5LZM
DownloadVisualize
BU of 5lzm by Molmil
COMPARISON OF THE CRYSTAL STRUCTURE OF BACTERIOPHAGE T4 LYSOZYME AT LOW, MEDIUM, AND HIGH IONIC STRENGTHS
Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, T4 LYSOZYME
Authors:Bell, J.A, Wilson, K, Zhang, X.-J, Faber, H.R, Nicholson, H, Matthews, B.W.
Deposit date:1991-01-25
Release date:1992-07-15
Last modified:2021-06-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Comparison of the crystal structure of bacteriophage T4 lysozyme at low, medium, and high ionic strengths.
Proteins, 10, 1991
4TZB
DownloadVisualize
BU of 4tzb by Molmil
Structure of NDM-Metallo-beta-lactamase
Descriptor: CADMIUM ION, COBALT (II) ION, Metallo-beta-lactamase, ...
Authors:Ferguson, J.A, Makena, A, Brem, J, McDonough, M.A, Schofield, C.J.
Deposit date:2014-07-09
Release date:2015-07-22
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.029 Å)
Cite:Structure of Metallo-beta-lactamase
To Be Published
4U9M
DownloadVisualize
BU of 4u9m by Molmil
Structure of the DNA duplex d(ATTAAT)2 with Hoogsteen hydrogen bonds
Descriptor: DNA (5'-D(*AP*TP*TP*AP*AP*T)-3')
Authors:Acosta-Reyes, F.J, Alechaga, E, Subirana, J.A, Campos, J.L.
Deposit date:2014-08-06
Release date:2015-04-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.13 Å)
Cite:Structure of the DNA Duplex d(ATTAAT)2 with Hoogsteen Hydrogen Bonds.
Plos One, 10, 2015
4UFC
DownloadVisualize
BU of 4ufc by Molmil
Crystal structure of the GH95 enzyme BACOVA_03438
Descriptor: CACODYLATE ION, CALCIUM ION, GH95, ...
Authors:Rogowski, A, Briggs, J.A, Mortimer, J.C, Tryfona, T, Terrapon, N, Lowe, E.C, Basle, A, Morland, C, Day, A.M, Zheng, H, Rogers, T.E, Thompson, P, Hawkins, A.R, Yadav, M.P, Henrissat, B, Martens, E.C, Dupree, P, Gilbert, H.J, Bolam, D.N.
Deposit date:2015-03-16
Release date:2015-07-08
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Glycan Complexity Dictates Microbial Resource Allocation in the Large Intestine.
Nat.Commun., 6, 2015
4TWS
DownloadVisualize
BU of 4tws by Molmil
Gadolinium Derivative of Tetragonal Hen Egg-White Lysozyme at 1.45 A Resolution
Descriptor: 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID, CHLORIDE ION, GADOLINIUM ATOM, ...
Authors:Holton, J.M, Classen, S, Frankel, K.A, Tainer, J.A.
Deposit date:2014-07-01
Release date:2014-08-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:The R-factor gap in macromolecular crystallography: an untapped potential for insights on accurate structures.
Febs J., 281, 2014
4TY0
DownloadVisualize
BU of 4ty0 by Molmil
Crystal structure of Vibrio cholerae DncV cyclic AMP-GMP synthase in complex with linear intermediate 5' pppA(3',5')pG
Descriptor: ACETATE ION, Cyclic AMP-GMP synthase, MAGNESIUM ION, ...
Authors:Kranzusch, P.J, Lee, A.S.Y, Wilson, S.C, Solovykh, M.S, Vance, R.E, Berger, J.M, Doudna, J.A.
Deposit date:2014-07-07
Release date:2014-08-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure-Guided Reprogramming of Human cGAS Dinucleotide Linkage Specificity.
Cell, 158, 2014
4TXZ
DownloadVisualize
BU of 4txz by Molmil
Crystal structure of Vibrio cholerae DncV cyclic AMP-GMP synthase in complex with nonhydrolyzable GTP
Descriptor: Cyclic AMP-GMP synthase, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
Authors:Kranzusch, P.J, Lee, A.S.Y, Wilson, S.C, Solovykh, M.S, Vance, R.E, Berger, J.M, Doudna, J.A.
Deposit date:2014-07-07
Release date:2014-08-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure-Guided Reprogramming of Human cGAS Dinucleotide Linkage Specificity.
Cell, 158, 2014
4TYF
DownloadVisualize
BU of 4tyf by Molmil
Structure of a Metallo-beta-lactamase
Descriptor: NDM-4, ZINC ION
Authors:Ferguson, J.A, Makena, A, Brem, J, McDonough, M.A, Schofield, C.J.
Deposit date:2014-07-08
Release date:2015-07-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Structure of a Metallo-beta-lactamase
To Be Published
4ULX
DownloadVisualize
BU of 4ulx by Molmil
Crystal structure of ancestral thioredoxin, relative to the last common ancestor of the Cyanobacterial, Deinococcus and Thermus groups, LPBCA-L89K mutant.
Descriptor: CHLORIDE ION, LPBCA-L89K THIOREDOXIN
Authors:Gavira, J.A, Risso, V.A, Ibarra-Molero, B, Sanchez-Ruiz, J.M.
Deposit date:2014-05-14
Release date:2014-11-26
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Mutational Studies on Resurrected Ancestral Proteins Reveal Conservation of Site-Specific Amino Acid Preferences Throughout Evolutionary History.
Mol.Biol.Evol., 32, 2015
4UAB
DownloadVisualize
BU of 4uab by Molmil
Crystal structure of a TRAP periplasmic solute binding protein from Chromohalobacter salexigens DSM 3043 (Csal_0678), Target EFI-501078, with bound ethanolamine
Descriptor: CHLORIDE ION, ETHANOLAMINE, Twin-arginine translocation pathway signal
Authors:Vetting, M.W, Al Obaidi, N.F, Morisco, L.L, Wasserman, S.R, Sojitra, S, Stead, M, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Evans, B, Hillerich, B, Love, J, Seidel, R.D, Imker, H.J, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-08-08
Release date:2014-09-03
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.
Biochemistry, 54, 2015

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon