SARS-CoV-2 HexaPro S One RBD up

Summary for 6XKL

EMDB information22221 22222
DescriptorSpike glycoprotein, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose (3 entities in total)
Functional Keywordssars-cov-2, glycoprotein, fusion protein, viral protein
Biological sourceSevere acute respiratory syndrome coronavirus 2 (2019-nCoV)
Total number of polymer chains3
Total molecular weight438144.55
Wrapp, D.,Hsieh, C.-L.,Goldsmith, J.A.,McLellan, J.S. (deposition date: 2020-06-26, release date: 2020-07-15, Last modification date: 2020-07-29)
Primary citation
Hsieh, C.L.,Goldsmith, J.A.,Schaub, J.M.,DiVenere, A.M.,Kuo, H.C.,Javanmardi, K.,Le, K.C.,Wrapp, D.,Lee, A.G.,Liu, Y.,Chou, C.W.,Byrne, P.O.,Hjorth, C.K.,Johnson, N.V.,Ludes-Meyers, J.,Nguyen, A.W.,Park, J.,Wang, N.,Amengor, D.,Maynard, J.A.,Finkelstein, I.J.,McLellan, J.S.
Structure-based Design of Prefusion-stabilized SARS-CoV-2 Spikes.
Biorxiv, 2020
PubMed: 32577660 (PDB entries with the same primary citation)
DOI: 10.1101/2020.05.30.125484
MImport into Mendeley
Experimental method

Structure validation

ClashscoreRamachandran outliersSidechain outliers6 0.1% 3.2%MetricValuePercentile RanksWorseBetterPercentile relative to all structuresPercentile relative to all EM structures
Download full validation reportDownload
PDB entries from 2020-08-12