[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 236 items for (author: zuo & m)

EMDB-62028:
Cryo-EM structure of TMPRSS2 in complex with Fab fragments of 752 mAb and 2228 mAb
Method: single particle / : Katsura K, Hisano T, Matsumoto T, Shirouzu M

PDB-9k3t:
Cryo-EM structure of TMPRSS2 in complex with Fab fragments of 752 mAb and 2228 mAb
Method: single particle / : Katsura K, Hisano T, Matsumoto T, Shirouzu M

EMDB-62441:
CryoEM structure of osPHT1-11 at pH 8.0
Method: single particle / : Du ZM, Guan ZY, Liu Z

EMDB-62480:
CryoEM structure of osPHT1-11 at pH 5.0
Method: single particle / : Du ZM, Guan ZY, Liu Z

PDB-9kmq:
CryoEM structure of osPHT1-11 at pH 8.0
Method: single particle / : Du ZM, Guan ZY, Liu Z

PDB-9kou:
CryoEM structure of osPHT1-11 at pH 5.0
Method: single particle / : Du ZM, Guan ZY, Liu Z

EMDB-60854:
Cryo-EM structure of urease from Ureaplasma parvum
Method: single particle / : Fujita J, Namba K, Wu HN, Yanagihara I

PDB-9it2:
Cryo-EM structure of urease from Ureaplasma parvum
Method: single particle / : Fujita J, Namba K, Wu HN, Yanagihara I

EMDB-50114:
The molecular basis and modulation of lamin-specific chromatin interaction
Method: single particle / : Wang B, Luo Q

EMDB-50291:
The molecular basis and modulation of lamin-specific chromatin interactions
Method: single particle / : Wang B, Luo Q

EMDB-52630:
MEF in-situ nucleosome consensus structure
Method: subtomogram averaging / : Eibauer M, Medalia O

EMDB-52633:
MEF in-situ nucleosome canonical structure
Method: subtomogram averaging / : Eibauer M, Medalia O

PDB-9f0o:
The molecular basis and modulation of lamin-specific chromatin interaction
Method: single particle / : Wang B, Luo Q

EMDB-64581:
SARS-CoV2 Spike protein with Fab fragment antibody KXD355,state1
Method: single particle / : Wang H

EMDB-64582:
SARS-CoV2 Spike protein with Fab fragment antibody KXD355,state2
Method: single particle / : Wang H

PDB-9uxd:
SARS-CoV2 Spike protein with Fab fragment antibody KXD355,state1
Method: single particle / : Wang H

PDB-9uxe:
SARS-CoV2 Spike protein with Fab fragment antibody KXD355,state2
Method: single particle / : Wang H

EMDB-60257:
conformation 1 cryo-EM map of N8_Cullin1/Rbx1/Skp1/Skp2/Cks2/p27 in complex with Extension Probe-Ub2 at a resolution of 8.07 angstrom
Method: single particle / : Ai HS, Liang LJ, Li CT, Zhao FY, Zhang LY, Li JH

EMDB-60258:
conformation 2 cryo-EM map of N8_Cullin1/Rbx1/Skp1/Skp2/Cks2/p27 in complex with Extension Probe-Ub2 at a resolution of 7.64 angstrom
Method: single particle / : Ai HS, Liang LJ, Li CT, Zhao FY, Zhang LY, Li JH

EMDB-60259:
conformation 3 cryo-EM map of N8_Cullin1/Rbx1/Skp1/Skp2/Cks2/p27 in complex with Extension Probe-Ub2 at a resolution of 8.33 angstrom
Method: single particle / : Ai HS, Liang LJ, Li CT, Zhao FY, Zhang LY, Li JH

EMDB-60260:
cryo-EM map of N8_Cullin1/Rbx1/Skp1/Skp2/Cks2/p27 in complex with Extension Probe-Ub4 at a resolution of 7.05 angstrom
Method: single particle / : Ai HS, Liang LJ, Li CT, Zhao FY, Zhang LY, Li JH

EMDB-60261:
Skeleton cryo-EM map of N8_Cullin1/Rbx1/Skp1/Skp2/Cks2/p27 in complex with Extension Probe-Ub4 at a resolution of 4.51 angstrom
Method: single particle / : Ai HS, Liang LJ, Li CT, Zhao FY, Zhang LY, Li JH

EMDB-19827:
Tomogram of nuclear envlope of WT mouse embryonic fibroblast
Method: electron tomography / : Kronenberg-Tenga R, Medalia O

EMDB-19828:
Tomogram of nuclear envlope of LmnaKO mouse embryonic fibroblast
Method: electron tomography / : Kronenberg-Tenga R, Medalia O

EMDB-19829:
Tomogram of nuclear envlope of LBDKO mouse embryonic fibroblast
Method: electron tomography / : Kronenberg-Tenga R, Medalia O

EMDB-61139:
CryoEM structure of human XPR1 in complex with phosphate in state A
Method: single particle / : Zhang WH, Chen YK, Guan ZY, Liu Z

EMDB-61140:
CryoEM structure of human XPR1 in complex with phosphate in state B
Method: single particle / : Zhang WH, Chen YK, Guan ZY, Liu Z

EMDB-61141:
CryoEM structure of human XPR1 in complex with phosphate in state C
Method: single particle / : Zhang WH, Chen YK, Guan ZY, Liu Z

PDB-9j51:
CryoEM structure of human XPR1 in complex with phosphate in state A
Method: single particle / : Zhang WH, Chen YK, Guan ZY, Liu Z

PDB-9j52:
CryoEM structure of human XPR1 in complex with phosphate in state B
Method: single particle / : Zhang WH, Chen YK, Guan ZY, Liu Z

PDB-9j53:
CryoEM structure of human XPR1 in complex with phosphate in state C
Method: single particle / : Zhang WH, Chen YK, Guan ZY, Liu Z

EMDB-61138:
CryoEM structure of human XPR1 in apo state
Method: single particle / : Zhang WH, Chen YK, Guan ZY, Liu Z

PDB-9j4x:
CryoEM structure of human XPR1 in apo state
Method: single particle / : Zhang WH, Chen YK, Guan ZY, Liu Z

EMDB-46724:
Cryo-EM structure of human ABCB6 transporter in an inward-facing conformation
Method: single particle / : Shaik MM, Myasnikov A, Oldham ML, Baril SA, Kalathur RC, Schuetz JD

PDB-9dbq:
Cryo-EM structure of human ABCB6 transporter in an inward-facing conformation
Method: single particle / : Shaik MM, Myasnikov A, Oldham ML, Baril SA, Kalathur RC, Schuetz JD

EMDB-36461:
Structure of a synthetic circadian clock protein KaiC mutant of cyanobacteria Synechococcus elongatus PCC 7942
Method: single particle / : Jia X, Zhang Q, Li S, Guo J

PDB-8jon:
Structure of a synthetic circadian clock protein KaiC mutant of cyanobacteria Synechococcus elongatus PCC 7942
Method: single particle / : Jia X, Zhang Q, Li S, Guo J

EMDB-36987:
Structure of CUL3-RBX1-KLHL22 complex without CUL3 NA motif
Method: single particle / : Wang W, Ling L, Dai Z, Zuo P, Yin Y

PDB-8k9i:
Structure of CUL3-RBX1-KLHL22 complex without CUL3 NA motif
Method: single particle / : Wang W, Ling L, Dai Z, Zuo P, Yin Y

EMDB-36961:
Structure of CUL3-RBX1-KLHL22 complex
Method: single particle / : Wang W, Ling L, Dai Z, Zuo P, Yin Y

EMDB-39719:
Focused map of CUL3-RBX1-KLHL22 dimerization region
Method: single particle / : Wang W, Ling L, Dai Z, Zuo P, Yin Y

EMDB-39720:
Consensus map of CUL3-RBX1-KLHL22 complex
Method: single particle / : Wang W, Ling L, Dai Z, Zuo P, Yin Y

EMDB-39725:
Cryo-EM structure of CUL3-RBX1-KLHL22 complex --C1 Symmetry
Method: single particle / : Wang W, Ling L, Dai Z, Zuo P, Yin Y

PDB-8k8t:
Structure of CUL3-RBX1-KLHL22 complex
Method: single particle / : Wang W, Ling L, Dai Z, Zuo P, Yin Y

EMDB-38453:
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein in complex with ACE2 (1-up state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

EMDB-38454:
Structure of the SARS-CoV-2 EG.5.1 spike RBD in complex with ACE2
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

PDB-8xlm:
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein in complex with ACE2 (1-up state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

PDB-8xln:
Structure of the SARS-CoV-2 EG.5.1 spike RBD in complex with ACE2
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

EMDB-37648:
SARS-CoV-2 EG.5.1 spike glycoprotein (1-up state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

EMDB-37650:
SARS-CoV-2 EG.5.1 spike glycoprotein (closed-2 state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more