[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 341 items for (author: zhang & zy)

EMDB-65163:
herpes simplex virus type 1 helicase-primase structure in complex with ssDNA, ADP and magnesium ion
Method: single particle / : Wu YQ, Jiang ZY, Chen XL, Zheng ZY, Dong CJ

EMDB-66328:
herpes simplex virus type 1 helicase-primase structure in complex with ssDNA, ADP and magnesium ion
Method: single particle / : Wu YQ, Jiang ZY, Chen XL, Zheng ZY, Dong CJ

EMDB-66330:
focused map for HSV-1 helicase-primase in complex with ssDNA, ADP and magnesium
Method: single particle / : Wu YQ, Jiang ZY, Chen XL, Zheng ZY, Dong CJ

EMDB-52570:
Cryo-EM structure of mouse RNF213 (WB3/WB4 + ATP)
Method: single particle / : Grabarczyk DB, Ahel J, Clausen T

EMDB-52571:
Cryo-EM structure of mouse RNF213:UBE2L3 transthiolation intermediate, chemically stabilized, and ATPgS
Method: single particle / : Grabarczyk DB, Ahel J, Clausen T

PDB-9i1i:
Cryo-EM structure of mouse RNF213 (WB3/WB4 + ATP)
Method: single particle / : Grabarczyk DB, Ahel J, Clausen T

PDB-9i1j:
Cryo-EM structure of mouse RNF213:UBE2L3 transthiolation intermediate, chemically stabilized, and ATPgS
Method: single particle / : Grabarczyk DB, Ahel J, Clausen T

EMDB-54837:
Chlamydomonas nuclear envelope-bound ribosome
Method: subtomogram averaging / : Waltz F, Lamm L, Righetto RD, Engel BD

EMDB-51847:
80S Ribosome Average for EMPIAR-11830
Method: subtomogram averaging / : Khavnekar S

EMDB-51848:
RuBisCo Average for EMPIAR-11830
Method: subtomogram averaging / : Khavnekar S

EMDB-62441:
CryoEM structure of osPHT1-11 at pH 8.0
Method: single particle / : Du ZM, Guan ZY, Liu Z

EMDB-62480:
CryoEM structure of osPHT1-11 at pH 5.0
Method: single particle / : Du ZM, Guan ZY, Liu Z

EMDB-61834:
Cryo-EM structure of transporter2a1
Method: single particle / : Jiang DH, Xia ZY

EMDB-61836:
Cryo-EM structure of transporter2a1_PGE2
Method: single particle / : Jiang DH, Xia ZY

EMDB-61289:
Herpes simplex virus type 1 polymerase machinery in complex with duplex DNA, acyclovir triphosphate and calcium ions
Method: single particle / : Wu YQ, Chen XL, Jiang ZY, Li DY, Zhang ZY, Dong CJ

EMDB-60663:
SARS-CoV-2 E-RTC bound to pRNA-nsp9 and GDP-BeF3-
Method: single particle / : Yan LM, Huang YC, Liu YX, Rao ZH, Lou ZY

EMDB-46604:
BG505 DS-SOSIP.664 apo structure from the CH103 KN cryo-EM dataset
Method: single particle / : Parsons RJ, Acharya P

EMDB-46605:
Cryo-EM structure of BG505 DS-SOSIP.664 with 1 CH103 KN Fab bound
Method: single particle / : Parsons RJ, Acharya P

EMDB-46606:
Cryo-EM structure of BG505 DS-SOSIP.664 with 2 CH103 KN Fabs bound
Method: single particle / : Parsons RJ, Acharya P

EMDB-46613:
Cryo-EM structure of BG505 DS-SOSIP.664 with 1 CH103 Fab bound
Method: single particle / : Parsons RJ, Acharya P

EMDB-46614:
Cryo-EM structure of BG505 DS-SOSIP.664 with 2 CH103 Fabs bound
Method: single particle / : Parsons RJ, Acharya P

PDB-9d7g:
BG505 DS-SOSIP.664 apo structure from the CH103 KN cryo-EM dataset
Method: single particle / : Parsons RJ, Acharya P

PDB-9d7h:
Cryo-EM structure of BG505 DS-SOSIP.664 with 1 CH103 KN Fab bound
Method: single particle / : Parsons RJ, Acharya P

PDB-9d7i:
Cryo-EM structure of BG505 DS-SOSIP.664 with 2 CH103 KN Fabs bound
Method: single particle / : Parsons RJ, Acharya P

PDB-9d7o:
Cryo-EM structure of BG505 DS-SOSIP.664 with 1 CH103 Fab bound
Method: single particle / : Parsons RJ, Acharya P

PDB-9d7p:
Cryo-EM structure of BG505 DS-SOSIP.664 with 2 CH103 Fabs bound
Method: single particle / : Parsons RJ, Acharya P

EMDB-60816:
Cryo-EM structure of PhyB(Y276H,1-908)-PIF6beta complex
Method: single particle / : Jia HL, Guan ZY, Ding JY, Wang XY, Ma L, Yin P

EMDB-60860:
Cryo-EM structure of full-length phyB(Y276H)-PIF6beta complex
Method: single particle / : Jia HL, Guan ZY, Ding JY, Wang XY, Ma L, Yin P

EMDB-61582:
Cryo-EM structure of phyB-PIF6beta complex
Method: single particle / : Jia HL, Guan ZY, Ding JY, Wang XY, Ma L, Yin P

EMDB-44915:
Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
Method: single particle / : Haile M, Anton L, Ho CM

EMDB-44916:
Single particle cryoEM structure of the Pf80S ribosome in the POST state (nrt with P- and E-site tRNA)
Method: single particle / : Anton L, Haile M, Ho CM

EMDB-44918:
Single particle CryoEM structure of the Pf80S ribosome in the unloaded state (nrt with E-site tRNA)
Method: single particle / : Haile M, Anton L, Ho CM

EMDB-44919:
Single particle CryoEM structure of the Pf80S ribosome in the rotated-2 PRE state (rt state with P and E-site tRNA)
Method: single particle / : Haile M, Anton L, Ho CM

EMDB-44920:
Single particle CryoEM structure of the Pf80S ribosome in rotated state with E-site tRNA
Method: single particle / : Haile M, Anton L, Ho CM

PDB-9bup:
Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
Method: single particle / : Anton L, Haile M, Ho CM

PDB-9buq:
Single particle cryoEM structure of the Pf80S ribosome in the POST state (nrt with P- and E-site tRNA)
Method: single particle / : Anton L, Haile M, Ho CM

PDB-9bus:
Single particle CryoEM structure of the Pf80S ribosome in the unloaded state (nrt with E-site tRNA)
Method: single particle / : Anton L, Haile M, Ho CM

PDB-9but:
Single particle CryoEM structure of the Pf80S ribosome in the rotated-2 PRE state (rt state with P and E-site tRNA)
Method: single particle / : Anton L, Haile M, Ho CM

PDB-9buu:
Single particle CryoEM structure of the Pf80S ribosome in rotated state with E-site tRNA
Method: single particle / : Anton L, Haile M, Ho CM

EMDB-61158:
Cryo-EM structure of the rice isoamylase ISA1 dimer
Method: single particle / : Guan ZY, Yan JJ

EMDB-61188:
Cryo-EM structure of the rice isoamylase ISA1-ISA2 heterocomplex
Method: single particle / : Guan ZY, Yan JJ

EMDB-63051:
Cryo-EM structure of the rice isoamylase ISA1-ISA2 heterocomplex incubated with Amylopectin
Method: single particle / : Guan ZY, Yan JJ

EMDB-51802:
In situ structure of peripheral stalk of mitochondrial ATP synthase from Chlamydomonas reinhardtii, consensus subtomogram average
Method: subtomogram averaging / : Obr M, Zhang X, Kelley R, Khavnekar S, Waltz F, Righetto RD, Engel B, Kotecha A

EMDB-46464:
Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 4
Method: single particle / : Kwiatkowski N, Liang T, Sha Z, Collier PN, Yang A, Sathappa M, Paul A, Su L, Zheng X, Aversa R, Li K, Mehovic R, Breitkopf SB, Chen D, Howarth CL, Yuan K, Jo H, Growney JD, Weiss M, Williams J

EMDB-46465:
Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 4 (local mask)
Method: single particle / : Kwiatkowski N, Liang T, Sha Z, Collier PN, Yang A, Sathappa M, Paul A, Su L, Zheng X, Aversa R, Li K, Mehovic R, Breitkopf SB, Chen D, Howarth CL, Yuan K, Jo H, Growney JD, Weiss M, Williams J

PDB-9d0w:
Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 4
Method: single particle / : Kwiatkowski N, Liang T, Sha Z, Collier PN, Yang A, Sathappa M, Paul A, Su L, Zheng X, Aversa R, Li K, Mehovic R, Breitkopf SB, Chen D, Howarth CL, Yuan K, Jo H, Growney JD, Weiss M, Williams J

PDB-9d0x:
Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 4 (local mask)
Method: single particle / : Kwiatkowski N, Liang T, Sha Z, Collier PN, Yang A, Sathappa M, Paul A, Su L, Zheng X, Aversa R, Li K, Mehovic R, Breitkopf SB, Chen D, Howarth CL, Yuan K, Jo H, Growney JD, Weiss M, Williams J

EMDB-39711:
Cryo-EM structure of dimer HtmB2-CT
Method: single particle / : Sun YH, Zhang ZY, Mei Q

EMDB-39713:
Cryo-EM structure of tetramer HtmB2-CT
Method: single particle / : Sun YH, Zhang ZY, Mei Q

EMDB-39714:
Cryo-EM structure of trimer HtmB2-CT
Method: single particle / : Sun YH, Zhang ZY, Mei Q

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more