[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 704 items for (author: lun & z)

EMDB-45954:
Bufavirus 1 complexed with 6SLN
Method: single particle / : Gulkis MC, McKenna R, Bennett AD

PDB-9cuz:
Bufavirus 1 complexed with 6SLN
Method: single particle / : Gulkis MC, McKenna R, Bennett AD

EMDB-45955:
Bufavirus 1 at pH 7.4
Method: single particle / : Gulkis MC, McKenna R, Bennett AD

EMDB-45958:
Bufavirus 1 at pH 4.0
Method: single particle / : Gulkis MC, McKenna R, Bennett AD

PDB-9cv0:
Bufavirus 1 at pH 7.4
Method: single particle / : Gulkis MC, McKenna R, Bennett AD

PDB-9cv9:
Bufavirus 1 at pH 4.0
Method: single particle / : Gulkis MC, McKenna R, Bennett AD

EMDB-45973:
Bufavirus 1 at pH 2.6
Method: single particle / : Gulkis MC, McKenna R, Bennett AD

PDB-9cws:
Bufavirus 1 at pH 2.6
Method: single particle / : Gulkis MC, McKenna R, Bennett AD

EMDB-42118:
Toxoplasma gondii apical end with ICMAP1 conditionally knocked down
Method: electron tomography / : Martinez M, Dos Santos Pacheco N, Chang YW, Soldati-Favre D

EMDB-42119:
Toxoplasma gondii apical end with ICMAP2 conditionally knocked down
Method: electron tomography / : Martinez M, Dos Santos Pacheco N, Chang YW, Soldati-Favre D

EMDB-42120:
Toxoplasma gondii apical end with ICMAP3i conditionally knocked down
Method: electron tomography / : Martinez M, Dos Santos Pacheco N, Chang YW, Soldati-Favre D

EMDB-42121:
Toxoplasma gondii apical end with ICMAP3ii conditionally knocked down
Method: electron tomography / : Martinez M, Dos Santos Pacheco N, Chang YW, Soldati-Favre D

EMDB-43762:
Aca2 from Pectobacterium phage ZF40 bound to RNA
Method: single particle / : Wilkinson ME, Birkholz N, Kimanius D, Fineran PC

PDB-8w35:
Aca2 from Pectobacterium phage ZF40 bound to RNA
Method: single particle / : Wilkinson ME, Birkholz N, Kimanius D, Fineran PC

EMDB-18615:
Cryo-electron tomogram of small unilamellar vesicles decorated with poliovirus protein 2C
Method: electron tomography / : Shankar K, Dahmane S, Carlson LA

EMDB-44123:
Cryo-EM density of GluK2 amino-terminal domain (GluK2-ATD) from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to ConA
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44126:
Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two concanavalin A dimers
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44127:
Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one concanavalin A dimer
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44124:
Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one ConA dimer. Type II interface between GluK2 ligand-binding domain and ConA
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44125:
Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two ConA dimers. Type I interface between GluK2 ligand-binding domain and ConA
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44128:
Ligand-binding and transmembrane domains of kainate receptor GluK2 in the open state, a complex with agonist glutamate and positive allosteric modulator BPAM344
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44129:
Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two concanavalin A dimers. Composite map.
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44130:
Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one concanavalin A dimer. Composite map.
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44131:
Kainate receptor GluK2 in complex with agonist glutamate with pseudo 4-fold symmetrical ligand-binding domain layer
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44132:
Kainate receptor GluK2 in complex with agonist glutamate with asymmetric ligand-binding domain layer
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

PDB-9b33:
Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one ConA dimer. Type II interface between GluK2 ligand-binding domain and ConA
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

PDB-9b34:
Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two ConA dimers. Type I interface between GluK2 ligand-binding domain and ConA
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

PDB-9b35:
Ligand-binding and transmembrane domains of kainate receptor GluK2 in the open state, a complex with agonist glutamate and positive allosteric modulator BPAM344
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

PDB-9b36:
Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two concanavalin A dimers. Composite map.
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

PDB-9b37:
Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one concanavalin A dimer. Composite map.
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

PDB-9b38:
Kainate receptor GluK2 in complex with agonist glutamate with pseudo 4-fold symmetrical ligand-binding domain layer
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

PDB-9b39:
Kainate receptor GluK2 in complex with agonist glutamate with asymmetric ligand-binding domain layer
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-16103:
Human serotonin 5-HT3A receptor (apo, active/distorted conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-16104:
Human serotonin 5-HT3A receptor in complex with vortioxetine (detergent, ECD only, active/distorted conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-16105:
Human serotonin 5-HT3A receptor in complex with vortioxetine (nanodiscs, ECD, active/distorted conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

PDB-8bl8:
Human serotonin 5-HT3A receptor (apo, active/distorted conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

PDB-8bla:
Human serotonin 5-HT3A receptor in complex with vortioxetine (detergent, ECD only, active/distorted conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

PDB-8blb:
Human serotonin 5-HT3A receptor in complex with vortioxetine (nanodiscs, ECD, active/distorted conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-40248:
CRISPR-Cas type III-D effector complex
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40250:
CRISPR-Cas type III-D effector complex bound to a self-target RNA in the pre-cleavage state
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40251:
CRISPR-Cas type III-D effector complex bound to self-target RNA in a post-cleavage state
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40276:
CRISPR-Cas type III-D effector complex consensus map
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40296:
CRISPR-Cas type III-D effector complex local refinement map
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40297:
CRISPR-Cas type III-D effector complex bound to a target RNA local refinement map
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40298:
CRISPR-Cas type III-D effector complex bound to a target RNA consensus map
Method: single particle / : Schwartz EA, Taylor DW

PDB-8s9t:
CRISPR-Cas type III-D effector complex
Method: single particle / : Schwartz EA, Taylor DW

PDB-8s9v:
CRISPR-Cas type III-D effector complex bound to a self-target RNA in the pre-cleavage state
Method: single particle / : Schwartz EA, Taylor DW

PDB-8s9x:
CRISPR-Cas type III-D effector complex bound to self-target RNA in a post-cleavage state
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40249:
CRISPR-Cas type III-D effector complex bound to a target RNA
Method: single particle / : Schwartz EA, Taylor DW

EMDB-43751:
TRPM7 structure in complex with anticancer agent CCT128930 in closed state
Method: single particle / : Nadezhdin KD, Sobolevsky AI

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more