[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 73 items for (author: inami & m)

EMDB-61731:
Polyrod formed by FlgG (G65V) from the Salmonella TH26292 strain
Method: helical / : Yamaguchi T, Kato T, Minamino T, Namba K

EMDB-61835:
Polyrod-P ring complex from Salmonella TH26292 strain
Method: single particle / : Yamaguchi T, Namba K, Minamino T, Kato T

PDB-9jqo:
Polyrod formed by FlgG (G65V) from the Salmonella TH26292 strain
Method: helical / : Yamaguchi T, Kato T, Minamino T, Namba K

EMDB-61993:
Structure of the Salmonella flagellar FliPQR complex reconstituted in the peptidisc
Method: single particle / : Kinoshita M, Miyata T, Makino F, Imada K, Namba K, Minamino T

PDB-9k29:
Structure of the Salmonella flagellar FliPQR complex reconstituted in the peptidisc
Method: single particle / : Kinoshita M, Miyata T, Makino F, Imada K, Namba K, Minamino T

EMDB-60989:
Class 2 state of the GfsA KSQ-ancestralAT chimeric didomain in complex with the GfsA ACP domain
Method: single particle / : Chisuga T, Liao Z, Adachi N, Kawasaki M, Moriya T, Senda T, Kudo F, Eguchi T, Miyanaga A

EMDB-61520:
Class 3 state of the GfsA KSQ-ancestralAT chimeric didomain in complex with the GfsA ACP domain
Method: single particle / : Chisuga T, Liao Z, Adachi N, Kawasaki M, Moriya T, Senda T, Kudo F, Eguchi T, Miyanaga A

EMDB-61522:
Class 1 state of the GfsA KSQ-ancestralAT chimeric didomain in complex with the GfsA ACP domain
Method: single particle / : Chisuga T, Liao Z, Adachi N, Kawasaki M, Moriya T, Senda T, Kudo F, Eguchi T, Miyanaga A

PDB-9jj9:
Class 3 state of the GfsA KSQ-ancestralAT chimeric didomain in complex with the GfsA ACP domain
Method: single particle / : Chisuga T, Liao Z, Adachi N, Kawasaki M, Moriya T, Senda T, Kudo F, Eguchi T, Miyanaga A

PDB-9jjb:
Class 1 state of the GfsA KSQ-ancestralAT chimeric didomain in complex with the GfsA ACP domain
Method: single particle / : Chisuga T, Liao Z, Adachi N, Kawasaki M, Moriya T, Senda T, Kudo F, Eguchi T, Miyanaga A

EMDB-60747:
Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
Method: single particle / : Tanzawa T, Minami A, Yoshida H, Kato T, Ogawa T

PDB-9iot:
Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
Method: single particle / : Tanzawa T, Minami A, Yoshida H, Kato T, Ogawa T

EMDB-63714:
Structure of photosynthetic LH1-RC complex the Halophilic Nonsulfur Purple Bacterium, Rhodothalassium salexigens
Method: single particle / : Tani K, Kanno R, Inami M, Ooya T, Matsushita R, Minamino A, Takenaka S, Takaichi S, Purba ER, Hall M, Mochizuki T, Yu LJ, Mizoguchi A, Humbel BM, Madigan MT, Kimura Y, Wang-Otomo ZY

EMDB-64946:
Map including micelle density from the photosynthetic LH1-RC complex of the halophilic nonsulfur purple bacterium Rhodothalassium salexigens
Method: single particle / : Tani K, Kanno R, Inami M, Ooya T, Matsushita R, Inada K, Takenaka S, Takaichi S, Purba ER, Hall M, Mochizuki T, Yu LJ, Mizoguchi A, Humbel BM, Madigan MT, Kimura Y, Wang-Otomo ZY

PDB-9m8m:
Structure of photosynthetic LH1-RC complex the Halophilic Nonsulfur Purple Bacterium, Rhodothalassium salexigens
Method: single particle / : Tani K, Kanno R, Inami M, Ooya T, Matsushita R, Minamino A, Takenaka S, Takaichi S, Purba ER, Hall M, Mochizuki T, Yu LJ, Mizoguchi A, Humbel BM, Madigan MT, Kimura Y, Wang-Otomo ZY

EMDB-63392:
The chimeric flagellar motor complex between MotA1B1 from Paenibacillus sp. TCA20 and MotAB from E.coli, state 1
Method: single particle / : Onoe S, Nishikino T, Kinoshita M, Kishikawa J, Kato T

EMDB-63393:
The chimeric flagellar motor complex between MotA1B1 from Paenibacillus sp. TCA20 and MotAB from E.coli, state 2
Method: single particle / : Onoe S, Nishikino T, Kinoshita M, Kishikawa J, Kato T

EMDB-63394:
The chimeric flagellar motor complex between MotA1B1 from Paenibacillus sp. TCA20 and MotAB from E.coli, state 3
Method: single particle / : Onoe S, Nishikino T, Kinoshita M, Kishikawa J, Kato T

PDB-9lu9:
The chimeric flagellar motor complex between MotA1B1 from Paenibacillus sp. TCA20 and MotAB from E.coli, state 1
Method: single particle / : Onoe S, Nishikino T, Kinoshita M, Kishikawa J, Kato T

PDB-9lub:
The chimeric flagellar motor complex between MotA1B1 from Paenibacillus sp. TCA20 and MotAB from E.coli, state 2
Method: single particle / : Onoe S, Nishikino T, Kinoshita M, Kishikawa J, Kato T

PDB-9luc:
The chimeric flagellar motor complex between MotA1B1 from Paenibacillus sp. TCA20 and MotAB from E.coli, state 3
Method: single particle / : Onoe S, Nishikino T, Kinoshita M, Kishikawa J, Kato T

EMDB-39679:
A tetrameric STAT1-DNA complex
Method: single particle / : Sugiyama A, Minami M, Sugita Y, Ose T

EMDB-39680:
A dimeric STAT1-DNA complex
Method: single particle / : Sugiyama A, Minami M, Sugita Y, Ose T

PDB-8yyu:
A tetrameric STAT1-DNA complex
Method: single particle / : Sugiyama A, Minami M, Sugita Y, Ose T

PDB-8yyv:
A dimeric STAT1-DNA complex
Method: single particle / : Sugiyama A, Minami M, Sugita Y, Ose T

EMDB-60158:
Cryo-EM structure of photosynthetic LH1' complex of Roseospirillum parvum
Method: single particle / : Wang GL, Wang XP, Yu LJ

EMDB-60165:
Cryo-EM structure of photosynthetic LH1-RC core complex of Roseospirillum parvum
Method: single particle / : Wang GL, Wang XP, Yu LJ

PDB-8zjw:
Cryo-EM structure of photosynthetic LH1' complex of Roseospirillum parvum
Method: single particle / : Wang GL, Wang XP, Yu LJ

PDB-8zk2:
Cryo-EM structure of photosynthetic LH1-RC core complex of Roseospirillum parvum
Method: single particle / : Wang GL, Wang XP, Yu LJ

EMDB-60007:
Structure of the Salmonella flagellar MS-ring with C11 symmetry applied
Method: single particle / : Kinoshita M, Makino F, Miyata T, Imada K, Minamino T, Namba K

EMDB-60008:
Structure of the RBM3 ring of Salmonella flagellar MS-ring protein FliF with C33 symmetry applied
Method: single particle / : Kinoshita M, Makino F, Miyata T, Imada K, Minamino T, Namba K

EMDB-60009:
Structure of the RBM3 ring of Salmonella flagellar MS-ring protein FliF with C34 symmetry applied
Method: single particle / : Kinoshita M, Makino F, Miyata T, Imada K, Minamino T, Namba K

EMDB-62210:
Structure of the 34-mer RBM3 ring of Salmonella flagellar MS-ring protein FliF with C1 symmetry applied
Method: single particle / : Kinoshita M, Makino F, Miyata T, Imada K, Minamino T, Namba K

EMDB-62211:
Structure of the 33-mer RBM3 ring of Salmonella flagellar MS-ring protein FliF with C1 symmetry applied
Method: single particle / : Kinoshita M, Makino F, Miyata T, Imada K, Minamino T, Namba K

PDB-8zds:
Structure of the Salmonella flagellar MS-ring with C11 symmetry applied
Method: single particle / : Kinoshita M, Makino F, Miyata T, Imada K, Minamino T, Namba K

PDB-8zdt:
Structure of the RBM3 ring of Salmonella flagellar MS-ring protein FliF with C33 symmetry applied
Method: single particle / : Kinoshita M, Makino F, Miyata T, Imada K, Minamino T, Namba K

PDB-8zdu:
Structure of the RBM3 ring of Salmonella flagellar MS-ring protein FliF with C34 symmetry applied
Method: single particle / : Kinoshita M, Makino F, Miyata T, Imada K, Minamino T, Namba K

EMDB-60274:
SARS-CoV-2 XBB.1.5 spike glycoprotein trimer in complex with antigen-binding fragments (Fabs)
Method: single particle / : Sugita Y, Kimura K, Noda T, Hashiguchi T

EMDB-39761:
Structure of the S-ring region of the Vibrio flagellar MS-ring protein FliF with 34-fold symmetry applied
Method: single particle / : Takekawa N, Nishikino T, Kishikawa J, Hirose M, Kato T, Imada K, Homma M

EMDB-39763:
Structure of the S-ring region of the Vibrio flagellar MS-ring protein FliF with 35-fold symmetry applied
Method: single particle / : Takekawa N, Nishikino T, Kishikawa J, Hirose M, Kato T, Imada K, Homma M

EMDB-39764:
Homomeric 34mer of the Vibrio flagellar MS-ring protein FliF without symmetry imposition
Method: single particle / : Takekawa N, Nishikino T, Kishikawa J, Hirose M, Kato T, Imada K, Homma M

EMDB-39765:
Homomeric 35mer of the Vibrio flagellar MS-ring protein FliF without symmetry imposition
Method: single particle / : Takekawa N, Nishikino T, Kishikawa J, Hirose M, Kato T, Imada K, Homma M

PDB-8z4d:
Structure of the S-ring region of the Vibrio flagellar MS-ring protein FliF with 34-fold symmetry applied
Method: single particle / : Takekawa N, Nishikino T, Kishikawa J, Hirose M, Kato T, Imada K, Homma M

PDB-8z4g:
Structure of the S-ring region of the Vibrio flagellar MS-ring protein FliF with 35-fold symmetry applied
Method: single particle / : Takekawa N, Nishikino T, Kishikawa J, Hirose M, Kato T, Imada K, Homma M

EMDB-60959:
Salmonella enterica serovar Typhimurium FliC(G426A)delta(204-292) forming the L-type straight filament
Method: helical / : Waraich K, Makino F, Miyata T, Kinoshita M, Minamino T, Namba K

PDB-9iwq:
Salmonella enterica serovar Typhimurium FliC(G426A)delta(204-292) forming the L-type straight filament
Method: helical / : Waraich K, Makino F, Miyata T, Kinoshita M, Minamino T, Namba K

EMDB-37465:
Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by sucrose density
Method: single particle / : Tani K, Kanno R, Harada A, Kobayashi A, Minamino A, Nakamura N, Ji XC, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Iwasaki K, Humbel BM, Kimura Y, Wang-Otomo ZY

EMDB-37466:
Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by Ca2+-DEAE
Method: single particle / : Tani K, Kanno R, Harada A, Kobayashi A, Minamino A, Nakamura N, Ji XC, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Iwasaki K, Humbel BM, Kimura Y, Wang-Otomo ZY

PDB-8wdu:
Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by sucrose density
Method: single particle / : Tani K, Kanno R, Harada A, Kobayashi A, Minamino A, Nakamura N, Ji XC, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Iwasaki K, Humbel BM, Kimura Y, Wang-Otomo ZY

PDB-8wdv:
Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by Ca2+-DEAE
Method: single particle / : Tani K, Kanno R, Harada A, Kobayashi A, Minamino A, Nakamura N, Ji XC, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Iwasaki K, Humbel BM, Kimura Y, Wang-Otomo ZY

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more