[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 253 items for (author: eaton & a)

EMDB-71130:
A2AR-BRIL + ZM241385 + PGD2
Method: single particle / : Rao P, Rathinaswamy M, Chan M, Paredes AG, Patel C, Wranik BJ, Powell J, Eaton D, Hicks KJ, Mafi A, Hao Q

EMDB-71131:
A2AR-BRIL in complex with ZM241385
Method: single particle / : Rao P, Rathinaswamy M, Chan M, Paredes AG, Patel C, Wranik BJ, Powell J, Eaton D, Hicks KJ, Mafi A, Hao Q

PDB-9p1s:
A2AR-BRIL in complex with ZM241385 and PGD2
Method: single particle / : Rao P, Rathinaswamy M, Chan M, Paredes AG, Patel C, Wranik BJ, Powell J, Eaton D, Hicks KJ, Mafi A, Hao Q

PDB-9p1t:
A2AR-BRIL in complex with ZM241385
Method: single particle / : Rao P, Rathinaswamy M, Chan M, Paredes AG, Patel C, Wranik BJ, Powell J, Eaton D, Hicks KJ, Mafi A, Hao Q

EMDB-70340:
FH_302_07 Fab in complex with BG505 MD39.3 SOSIP (negative stain)
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70341:
FH_302_14 Fab in complex with BG505 MD39.3 SOSIP (negative stain)
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70342:
FH_302_23 Fab in complex with BG505 MD39.3 SOSIP (negative stain)
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70343:
BG505 MD39.3-CC5 SOSIP in complex with V1V3 epitope polyclonal Fabs isolated from HVTN302 human trial after dose 3 of mRNA-gp151-CD4KO immunization
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70344:
BG505 MD39.3-CC5 SOSIP in complex with gp41-base epitope polyclonal Fabs isolated from HVTN302 human trial after dose 3 of mRNA-gp151-CD4KO immunization
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70345:
BG505 MD39.3-CC5 SOSIP in complex with C3V5 epitope polyclonal Fabs isolated from HVTN302 human trial after dose 3 of mRNA-gp151-CD4KO immunization
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70549:
Cryo-landed and laser rehydrated beta-galactosidase
Method: single particle / : Mertz KL, Jordahl D, Hemme CA, Probasco MD, Forbes DS, Ducos PL, Salome AZ, Quarmby ST, Grant T, Coon JJ

EMDB-70551:
Outside of laser spot cryo-landed beta galactosidase
Method: single particle / : Mertz KL, Jordahl D, Hemme CA, Probasco MD, Forbes DS, Ducos PL, Salome AZ, Quarmby ST, Grant T, Coon JJ

EMDB-70552:
Plunge frozen control Beta Galactosidase
Method: single particle / : Mertz KL, Jordahl D, Hemme CA, Probasco MD, Forbes DS, Ducos PL, Salome AZ, Quarmby ST, Grant T, Coon JJ

EMDB-19559:
Human mitochondrial ribosome from elatol treated HEK cells (no tRNA/mRNA bound)
Method: single particle / : Singh V, Barrientos A, Amunts A

EMDB-19560:
Human mitoribosome purified from elatol treated HEK cells (tRNAs/mRNA at partial occupancy)
Method: single particle / : Singh V, Barrientos A, Amunts A

EMDB-44872:
EBOV GP/Nanosota-EB1
Method: single particle / : Bu F, Ye G, Liu B, Li F

EMDB-44873:
EBOV GP/Nanosota-EB2 complex
Method: single particle / : Bu F, Ye G, Liu B, Li F

PDB-9bsu:
EBOV GP/Nanosota-EB1
Method: single particle / : Bu F, Ye G, Liu B, Li F

PDB-9bsv:
EBOV GP/Nanosota-EB2 complex
Method: single particle / : Bu F, Ye G, Liu B, Li F

EMDB-43526:
Cryo-EM structure of MPL bound to TPO
Method: single particle / : Bratkowski M, Hao Q, Paddock M

PDB-8vu5:
Cryo-EM structure of MPL bound to TPO
Method: single particle / : Bratkowski M, Hao Q, Paddock M

EMDB-42247:
Degrader-induced complex between PTPN2 and CRBN-DDB1
Method: single particle / : Catalano C, Bratkowski M, Scapin G, Hao Q

PDB-8uh6:
Degrader-induced complex between PTPN2 and CRBN-DDB1
Method: single particle / : Catalano C, Bratkowski M, Scapin G, Hao Q

EMDB-50263:
SARS-CoV-2 BA-2.87.1 Spike ectodomain
Method: single particle / : Ren J, Stuart DI, Duyvesteyn HME

PDB-9f9y:
SARS-CoV-2 BA-2.87.1 Spike ectodomain
Method: single particle / : Ren J, Stuart DI, Duyvesteyn HME

EMDB-44246:
Cryo-EM structure of HIV-1 JRFL v6 Env in complex with vaccine-elicited, Membrane Proximal External Region (MPER) directed antibody DH1317.4.
Method: single particle / : Acharya P, Parsons R, Janowska K, Williams WB, Alam M, Haynes BF

EMDB-18639:
Locally refined SARS-CoV-2 BA-2.86 Spike receptor binding domain (RBD) complexed with angiotensin converting enzyme 2 (ACE2)
Method: single particle / : Ren J, Stuart DI, Duyvesteyn HME

EMDB-18649:
Local refinement of SARS-CoV-2 BA.2.86 Spike and XBB-7 Fab
Method: single particle / : Ren J, Duyvesteyn HME, Stuart DI

EMDB-19002:
XBB-4 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

PDB-8qsq:
Locally refined SARS-CoV-2 BA-2.86 Spike receptor binding domain (RBD) complexed with angiotensin converting enzyme 2 (ACE2)
Method: single particle / : Ren J, Stuart DI, Duyvesteyn HME

PDB-8qtd:
Local refinement of SARS-CoV-2 BA.2.86 Spike and XBB-7 Fab
Method: single particle / : Ren J, Duyvesteyn HME, Stuart DI

PDB-8r8k:
XBB-4 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-18807:
SD1-2 fab in complex with SARS-COV-2 BA.12.1 Spike Glycoprotein.
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-18808:
SD1-3 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

PDB-8r1c:
SD1-2 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

PDB-8r1d:
SD1-3 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-29941:
HPV16 E6-E6AP-p53 complex
Method: single particle / : Bratkowski MA, Wang JCK, Hao Q, Nile AH

PDB-8gcr:
HPV16 E6-E6AP-p53 complex
Method: single particle / : Bratkowski MA, Wang JCK, Hao Q, Nile AH

EMDB-16680:
BA.4/5-5 FAB IN COMPLEX WITH SARS-COV-2 BA.4 SPIKE GLYCOPROTEIN
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI, Fry EE

PDB-8cin:
BA.4/5-5 FAB IN COMPLEX WITH SARS-COV-2 BA.4 SPIKE GLYCOPROTEIN
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI, Fry EE

EMDB-16676:
Delta-RBD complex with BA.2-07 fab, SARS1-34 fab and C1 nanobody
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI, Fry EE

EMDB-41810:
Cryo-EM structure of vaccine-elicited CD4 binding site antibody DH1285 bound to HIV-1 CH505TFchim.6R.SOSIP.664v4.1 Env Local Refinement
Method: single particle / : Thakur B, Stalls VD, Acharya P

EMDB-41820:
Cryo-EM structure of vaccine-elicited CD4 binding site antibody DH1285 bound to HIV-1 CH505TFchim.6R.SOSIP.664v4.1 Env
Method: single particle / : Thakur B, Stalls VD, Acharya P

EMDB-41823:
Cryo-EM structure of vaccine-elicited CD4 binding site antibody DH1285 bound to HIV-1 CH505TFchim.6R.SOSIP.664v4.1 Env
Method: single particle / : Thakur B, Stalls VD, Acharya P

EMDB-41838:
Cryo-EM structure of vaccine-elicited CD4 binding site antibody DH1285 bound to partially open HIV-1 CH505TFchim.6R.SOSIP.664v4.1 Env
Method: single particle / : Thakur B, Stalls VD, Acharya P

PDB-8u1d:
Cryo-EM structure of vaccine-elicited CD4 binding site antibody DH1285 bound to HIV-1 CH505TFchim.6R.SOSIP.664v4.1 Env Local Refinement
Method: single particle / : Thakur B, Stalls VD, Acharya P

EMDB-40571:
Cryo-EM structure of PAPP-A2
Method: single particle / : Judge RA, Stoll VS, Eaton D, Hao Q, Bratkowski MA

PDB-8sl1:
Cryo-EM structure of PAPP-A2
Method: single particle / : Judge RA, Stoll VS, Eaton D, Hao Q, Bratkowski MA

EMDB-27703:
Structure of RBD directed antibody DH1047 in complex with SARS-CoV-2 spike: Local refinement of RBD-Fab interace
Method: single particle / : May AJ, Manne K, Acharya P

PDB-8dtk:
Structure of RBD directed antibody DH1047 in complex with SARS-CoV-2 spike: Local refinement of RBD-Fab interace
Method: single particle / : May AJ, Manne K, Acharya P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more