[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 20,583 items for (author: da & z)

EMDB-55083:
CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE
Method: single particle / : Rajan KS, Yonath A

EMDB-55091:
CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE
Method: single particle / : Rajan KS, Yonath A

PDB-9spf:
CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE
Method: single particle / : Rajan KS, Yonath A

PDB-9spi:
CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE
Method: single particle / : Rajan KS, Yonath A

EMDB-54428:
Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 3A
Method: single particle / : Raad NG, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS

EMDB-54446:
Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 2.8A
Method: single particle / : Raad NG, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS

EMDB-54907:
Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 3.3A
Method: single particle / : Raad NG, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS

EMDB-54908:
Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 4.2A
Method: single particle / : Raad NG, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS

PDB-9s0z:
Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 3A
Method: single particle / : Raad NG, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS

PDB-9s1e:
Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 2.8A
Method: single particle / : Raad NG, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS

PDB-9shp:
Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 3.3A
Method: single particle / : Raad NG, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS

PDB-9shq:
Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 4.2A
Method: single particle / : Raad NG, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS

EMDB-70159:
Cryo-EM structure of SHOC2-KRAS-PP1CA (SKP) complex
Method: single particle / : Finci LI, Bonsor DA, Simanshu DK

PDB-9o65:
Cryo-EM structure of SHOC2-KRAS-PP1CA (SKP) complex
Method: single particle / : Finci LI, Bonsor DA, Simanshu DK

EMDB-72189:
Structure of the Borna Disease Virus 1 L and co-factor P Protein in an apo state
Method: single particle / : Ogino T, Chakrapani S, Gibbs E, Ogino M

PDB-9q3a:
Structure of the Borna Disease Virus 1 L and co-factor P Protein in an apo state
Method: single particle / : Ogino T, Chakrapani S, Gibbs E, Ogino M

EMDB-63124:
The cryo-EM structure of amyloid fibrils from abdominal fat of an AL amyloidosis patient (case 1) - polymorph 1.
Method: helical / : Yao YX, Zhao QY, Liu C, Li D

EMDB-63125:
The cryo-EM structure of amyloid fibrils from heart of an AL amyloidosis patient (case 1) - polymorph 1.
Method: helical / : Yao YX, Zhao QY, Liu C, Li D

EMDB-63126:
The cryo-EM structure of amyloid fibrils from abdominal fat of an AL amyloidosis patient (case 2) - polymorph 1.
Method: helical / : Yao YX, Zhao QY, Liu C, Li D

EMDB-63127:
The cryo-EM structure of amyloid fibrils from abdominal fat of an AL amyloidosis patient (case 2) - polymorph 2.
Method: helical / : Yao YX, Zhao QY, Liu C, Li D

EMDB-63129:
The cryo-EM structure of amyloid fibrils from abdominal fat of an AL amyloidosis patient (case 3).
Method: helical / : Yao YX, Zhao QY, Liu C, Li D

EMDB-66676:
The cryo-EM structure of amyloid fibrils from abdominal fat of an AL amyloidosis patient (case 2) - polymorph 3
Method: helical / : Yao YX, Zhao QY, Liu C, Li D

PDB-9liv:
The cryo-EM structure of amyloid fibrils from abdominal fat of an AL amyloidosis patient (case 1) - polymorph 1.
Method: helical / : Yao YX, Zhao QY, Liu C, Li D

PDB-9liw:
The cryo-EM structure of amyloid fibrils from heart of an AL amyloidosis patient (case 1) - polymorph 1.
Method: helical / : Yao YX, Zhao QY, Liu C, Li D

PDB-9lix:
The cryo-EM structure of amyloid fibrils from abdominal fat of an AL amyloidosis patient (case 2) - polymorph 1.
Method: helical / : Yao YX, Zhao QY, Liu C, Li D

PDB-9liy:
The cryo-EM structure of amyloid fibrils from abdominal fat of an AL amyloidosis patient (case 2) - polymorph 2.
Method: helical / : Yao YX, Zhao QY, Liu C, Li D

PDB-9lj0:
The cryo-EM structure of amyloid fibrils from abdominal fat of an AL amyloidosis patient (case 3).
Method: helical / : Yao YX, Zhao QY, Liu C, Li D

EMDB-70338:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody SMZAb2 Fab
Method: single particle / : Galkin A, Pozharski E

EMDB-71715:
Cryo-EM structure of modified JEV virus E protein dimer
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-71727:
West Nile virus E protein
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-71728:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody OZ-D4 Fab
Method: single particle / : Galkin A, Pozharski E, Li Y

PDB-9od2:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody SMZAb2 Fab
Method: single particle / : Galkin A, Pozharski E

PDB-9pl9:
Cryo-EM structure of modified JEV virus E protein dimer
Method: single particle / : Galkin A, Pozharski E, Li Y

PDB-9pm6:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody OZ-D4 Fab
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-53065:
Respiratory supercomplex from Mycobacterium smegmatis with decylubiquinone
Method: single particle / : Kovalova T, Krol S, Brzezinski P, Hogbom M

PDB-9qef:
Respiratory supercomplex from Mycobacterium smegmatis with decylubiquinone
Method: single particle / : Kovalova T, Krol S, Brzezinski P, Hogbom M

EMDB-65163:
herpes simplex virus type 1 helicase-primase structure in complex with ssDNA, ADP and magnesium ion
Method: single particle / : Wu YQ, Jiang ZY, Chen XL, Zheng ZY, Dong CJ

EMDB-66328:
herpes simplex virus type 1 helicase-primase structure in complex with ssDNA, ADP and magnesium ion
Method: single particle / : Wu YQ, Jiang ZY, Chen XL, Zheng ZY, Dong CJ

EMDB-66330:
focused map for HSV-1 helicase-primase in complex with ssDNA, ADP and magnesium
Method: single particle / : Wu YQ, Jiang ZY, Chen XL, Zheng ZY, Dong CJ

PDB-9vlq:
herpes simplex virus type 1 helicase-primase structure in complex with ssDNA, ADP and magnesium ion
Method: single particle / : Wu YQ, Jiang ZY, Chen XL, Zheng ZY, Dong CJ

EMDB-63614:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Z, Hauser AS, Carlsson J

PDB-9m42:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Zj, Hauser AS, Carlsson J

EMDB-47765:
Week 26 C3V5, gp41-GH and gp41-base epitope polyclonal antibodies from participant 202 in complex with ConM SOSIP
Method: single particle / : Lin RN, Torres JL, Tran AS, Ozorowski G, Ward AB

EMDB-51023:
Structure of the minimal type I-F2 CRISPR-Cas DNA-interference complex.
Method: single particle / : Mais CN, Perry TN, Sanchez-Londono M, Steinchen W, Innis CA, Randau L, Paush P, Bange G

PDB-9g44:
Structure of the minimal type I-F2 CRISPR-Cas DNA-interference complex.
Method: single particle / : Mais CN, Perry TN, Sanchez-Londono M, Steinchen W, Innis CA, Randau L, Paush P, Bange G

EMDB-53632:
ssRNA-containing helical virus-like particle composed of PVA coat protein with 5 mutations (H89Q, E90S, S144E, K180E, and T210R)
Method: helical / : Koritnik N, Kezar A, Podobnik M

EMDB-53633:
RNA-free helical (h8.7) virus-like particle composed of PVA coat protein with 5 mutations (H89Q, E90S, S144E, K180E, and T210R)
Method: helical / : Koritnik N, Kezar A, Podobnik M

EMDB-53634:
RNA-free helical (h9.7) virus-like particle composed of PVA coat protein with 5 mutations (H89Q, E90S, S144E, K180E, and T210R)
Method: helical / : Koritnik N, Kezar A, Podobnik M

EMDB-53635:
RNA-free stacked-ring (r10) virus-like particle composed of PVA coat protein with 5 mutations (H89Q, E90S, S144E, K180E, and T210R)
Method: helical / : Koritnik N, Kezar A, Podobnik M

EMDB-53636:
RNA-free helical (h8.5) virus-like particle composed of PVA coat protein with R163A mutation
Method: helical / : Koritnik N, Kezar A, Podobnik M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more