[English] 日本語
Yorodumi Papers
- Database of articles cited by EMDB/PDB/SASBDB data -

+
Search query

Keywords
Structure methods
Author
Journal
IF

-
Structure paper

TitlePartial closure of the γ-tubulin ring complex by CDK5RAP2 activates microtubule nucleation.
Journal, issue, pagesDev Cell, Year 2024
Publish dateSep 23, 2024
AuthorsYixin Xu / Hugo Muñoz-Hernández / Rościsław Krutyhołowa / Florina Marxer / Ferdane Cetin / Michal Wieczorek /
PubMed AbstractMicrotubule nucleation is templated by the γ-tubulin ring complex (γ-TuRC), but its structure deviates from the geometry of α-/β-tubulin in the microtubule, explaining the complex's poor ...Microtubule nucleation is templated by the γ-tubulin ring complex (γ-TuRC), but its structure deviates from the geometry of α-/β-tubulin in the microtubule, explaining the complex's poor nucleating activity. Several proteins may activate the γ-TuRC, but the mechanisms underlying activation are not known. Here, we determined the structure of the porcine γ-TuRC purified using CDK5RAP2's centrosomin motif 1 (CM1). We identified an unexpected conformation of the γ-TuRC bound to multiple protein modules containing MZT2, GCP2, and CDK5RAP2, resulting in a long-range constriction of the γ-tubulin ring that brings it in closer agreement with the 13-protofilament microtubule. Additional CDK5RAP2 promoted γ-TuRC decoration and stimulated the microtubule-nucleating activities of the porcine γ-TuRC and a reconstituted, CM1-free human complex in single-molecule assays. Our results provide a structural mechanism for the control of microtubule nucleation by CM1 proteins and identify conformational transitions in the γ-TuRC that prime it for microtubule nucleation.
External linksDev Cell / PubMed:39321808
MethodsEM (single particle)
Resolution4.0 - 7.5 Å
Structure data

EMDB-51007: Structure of the Position 1 to 3 Open gamma-Tubulin Ring Complex from Pig Brain
Method: EM (single particle) / Resolution: 5.8 Å

EMDB-51008: Structure of the Position 4 to 11 Open gamma-Tubulin Ring Complex from Pig Brain
Method: EM (single particle) / Resolution: 4.37 Å

EMDB-51010: Structure of the Position 10 to 12 Open gamma-Tubulin Ring Complex from Pig Brain
Method: EM (single particle) / Resolution: 4.9 Å

EMDB-51011: Structure of the Position 1 to 3 CMG-decorated gamma-Tubulin Ring Complex from Pig Brain
Method: EM (single particle) / Resolution: 7.5 Å

EMDB-51012: Structure of the Position 4 to 7 CMG-decorated gamma-Tubulin Ring Complex from Pig Brain
Method: EM (single particle) / Resolution: 4.5 Å

EMDB-51013: Structure of the Position 13 to 14 CMG-decorated gamma-Tubulin Ring Complex from Pig Brain
Method: EM (single particle) / Resolution: 7.5 Å

EMDB-51014: Structure of the Position 10 to 12 CMG-decorated gamma-Tubulin Ring Complex from Pig Brain
Method: EM (single particle) / Resolution: 7.0 Å

EMDB-51015: Structure of the Position 8 to 9 CMG-decorated gamma-Tubulin Ring Complex from Pig Brain
Method: EM (single particle) / Resolution: 4.6 Å

EMDB-51016: Consensus cryo-EM reconstruction of the S. scrofa gamma-TuRC
Method: EM (single particle) / Resolution: 4.0 Å

EMDB-51017, PDB-9g3x:
Structure of the Partially-assembled gamma-Tubulin Ring Complex from Pig Brain
Method: EM (single particle) / Resolution: 4.5 Å

EMDB-51018, PDB-9g3y:
Structure of the Native CMG-decorated gamma-Tubulin Ring Complex from Pig Brain
Method: EM (single particle) / Resolution: 6.8 Å

EMDB-51019, PDB-9g3z:
Structure of the Open gamma-Tubulin Ring Complex from Pig Brain
Method: EM (single particle) / Resolution: 4.3 Å

EMDB-51020, PDB-9g40:
Structure of the Position 7 CMG-decorated gamma-Tubulin Ring Complex from Pig Brain
Method: EM (single particle) / Resolution: 4.3 Å

Source
  • sus scrofa (pig)
  • homo sapiens (human)
KeywordsSTRUCTURAL PROTEIN / Tubulin Complex

+
About Yorodumi Papers

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi Papers

Database of articles cited by EMDB/PDB/SASBDB data

  • Database of articles cited by EMDB, PDB, and SASBDB entries
  • Using PubMed data

Related info.:EMDB / PDB / SASBDB / Yorodumi / EMN Papers / Changes in new EM Navigator and Yorodumi

Read more