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Showing all 50 items for (author: arai & r)

EMDB-38931:
Cryo-EM structure of artificial protein nanocage mTIP120-Ba

EMDB-36948:
Human gamma-secretase in complex with a substrate mimetic

PDB-8k8e:
Human gamma-secretase in complex with a substrate mimetic

EMDB-28752:
Cryo-electron tomography of wild type a-synuclein preformed fibrils

EMDB-28753:
Cryo-electron tomography of S42Y a-synuclein preformed fibrils

EMDB-40219:
A subtomogram averaged structure of Helicobacter pylori flagellar motor from a flgV deletion mutant.

EMDB-33289:
Cryo-EM structure of mTIP60-Ba (metal-ion induced TIP60 (K67E) complex with barium ions

PDB-7xm1:
Cryo-EM structure of mTIP60-Ba (metal-ion induced TIP60 (K67E) complex with barium ions

EMDB-14313:
The SARS-CoV-2 spike in complex with the 2.15 neutralizing nanobody

EMDB-14314:
The SARS-CoV-2 spike in complex with the 1.29 neutralizing nanobody

EMDB-14315:
The SARS-CoV-2 spike in complex with the 1.10 neutralizing nanobody

PDB-7r4i:
The SARS-CoV-2 spike in complex with the 2.15 neutralizing nanobody

PDB-7r4q:
The SARS-CoV-2 spike in complex with the 1.29 neutralizing nanobody

PDB-7r4r:
The SARS-CoV-2 spike in complex with the 1.10 neutralizing nanobody

EMDB-13708:
Structure of pathological TDP-43 filaments from ALS with FTLD

EMDB-13710:
Structure of pathological TDP-43 filaments from ALS with FTLD (Individual 1, motor cortex)

EMDB-13712:
Structure of pathological TDP-43 filaments from ALS with FTLD (Individual 2, frontal cortex).

PDB-7py2:
Structure of pathological TDP-43 filaments from ALS with FTLD

EMDB-24408:
The Capsid Structure of the ChAdOx1 viral vector/chimpanzee adenovirus Y25

PDB-7rd1:
The Capsid Structure of the ChAdOx1 viral vector/chimpanzee adenovirus Y25

EMDB-31256:
Cryo-EM structure of designed protein nanoparticle TIP60 (Truncated Icosahedral Protein composed of 60-mer fusion proteins)

PDB-7eq9:
Cryo-EM structure of designed protein nanoparticle TIP60 (Truncated Icosahedral Protein composed of 60-mer fusion proteins)

EMDB-23280:
Cryo-EM structure of the human adenosine A1 receptor-Gi2-protein complex bound to its endogenous agonist and an allosteric ligand

EMDB-23281:
Cryo-EM structure of the human adenosine A1 receptor-Gi2-protein complex bound to its endogenous agonist

PDB-7ld3:
Cryo-EM structure of the human adenosine A1 receptor-Gi2-protein complex bound to its endogenous agonist and an allosteric ligand

PDB-7ld4:
Cryo-EM structure of the human adenosine A1 receptor-Gi2-protein complex bound to its endogenous agonist

EMDB-23122:
Subtomogram average of the hexameric fungal plasma membrane proton pump Pma1 from protoplast membrane of Candida glabrata CBS138 strain

EMDB-23123:
Subtomogram average of the hexameric fungal plasma membrane proton pump Pma1 from protoplast membrane of Candida glabrata KH238 strain

EMDB-10494:
cryo-ET of cryo-FIB milled HCT116 cell in the nuclear region, following 0.1M sucrose stimulation. Shown in Fig.1b of publication

EMDB-20322:
Yeast Vo motor in complex with 1 VopQ molecule

EMDB-20323:
Yeast Vo motor in complex with 2 VopQ molecules

PDB-6pe4:
Yeast Vo motor in complex with 1 VopQ molecule

PDB-6pe5:
Yeast Vo motor in complex with 2 VopQ molecules

EMDB-21021:
MicroED structure of an oxindole product from modified trpB at 0.9A resolution

EMDB-21022:
MicroED structure of a ketone product from modified trpB at 0.9A resolution

EMDB-9851:
membrane structure

PDB-6jnf:
Cryo-EM structure of the translocator of the outer mitochondrial membrane

PDB-6ny1:
CasX-gRNA-DNA(30bp) State II

PDB-6ny2:
CasX-gRNA-DNA(45bp) state I

PDB-6ny3:
CasX ternary complex with 30bp target DNA

EMDB-8987:
ApoCasX

EMDB-8988:
CasX binary complex

EMDB-8989:
CasX-gRNA-DNA (45T-20NT) State I

EMDB-8990:
CasX-gRNA-DNA (45T-20NT) State II

EMDB-8991:
CasX-gRNA-DNA (45T-45NT) State II

EMDB-8994:
CasX-gRNA-DNA (30bp) State II

EMDB-8980:
CasX ternary complex with 30bp target DNA

EMDB-8996:
CasX-gRNA-DNA(45bp) state I

EMDB-5584:
Life in the extremes: atomic structure of Sulfolobus Turreted Icosahedral Virus

PDB-3j31:
Life in the extremes: atomic structure of Sulfolobus Turreted Icosahedral Virus

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

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Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

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Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

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Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

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