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6O6V
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BU of 6o6v by Molmil
Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6
Descriptor: Csm6, Cyclic RNA cA4
Authors:Jia, N, Patel, D.J.
Deposit date:2019-03-07
Release date:2019-07-31
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:CRISPR-Cas III-A Csm6 CARF Domain Is a Ring Nuclease Triggering Stepwise cA4Cleavage with ApA>p Formation Terminating RNase Activity.
Mol.Cell, 75, 2019
6O6Y
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BU of 6o6y by Molmil
Crystal structure of Csm6 in complex with cyclic-tetraadenylates (cA4) by cocrystallization of Csm6 and cA4
Descriptor: 2',3'- cyclic AMP, 3'-O-[(R)-{[(2S,3aS,4S,6S,6aS)-6-(6-amino-9H-purin-9-yl)-2-hydroxy-2-oxotetrahydro-2H-2lambda~5~-furo[3,4-d][1,3,2]dioxaphosphol-4-yl]methoxy}(hydroxy)phosphoryl]adenosine, Csm6
Authors:Jia, N, Patel, D.J.
Deposit date:2019-03-07
Release date:2019-07-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:CRISPR-Cas III-A Csm6 CARF Domain Is a Ring Nuclease Triggering Stepwise cA4Cleavage with ApA>p Formation Terminating RNase Activity.
Mol.Cell, 75, 2019
3DYR
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BU of 3dyr by Molmil
Crystal structure of E. coli thioredoxin mutant I76T in its oxidized form
Descriptor: Thioredoxin-1
Authors:Ren, G, Bardwell, J.C.A, Xu, Z.
Deposit date:2008-07-28
Release date:2009-01-27
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Properties of the thioredoxin fold superfamily are modulated by a single amino acid residue.
J.Biol.Chem., 284, 2009
6O70
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BU of 6o70 by Molmil
Crystal structure of Csm6 H132A mutant in complex with cA4 by cocrystallization of cA4 and Csm6 H132A mutant
Descriptor: 2',3'- cyclic AMP, 3'-O-[(R)-{[(2S,3aS,4S,6S,6aS)-6-(6-amino-9H-purin-9-yl)-2-hydroxy-2-oxotetrahydro-2H-2lambda~5~-furo[3,4-d][1,3,2]dioxaphosphol-4-yl]methoxy}(hydroxy)phosphoryl]adenosine, Csm6
Authors:Jia, N, Patel, D.J.
Deposit date:2019-03-07
Release date:2019-07-31
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:CRISPR-Cas III-A Csm6 CARF Domain Is a Ring Nuclease Triggering Stepwise cA4Cleavage with ApA>p Formation Terminating RNase Activity.
Mol.Cell, 75, 2019
6O6Z
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BU of 6o6z by Molmil
Crystal structure of Csm6 H381A in complex with cA4 by cocrystallization of cA4 and Csm6
Descriptor: 3'-O-[(R)-{[(2S,3aS,4S,6S,6aS)-6-(6-amino-9H-purin-9-yl)-2-hydroxy-2-oxotetrahydro-2H-2lambda~5~-furo[3,4-d][1,3,2]dioxaphosphol-4-yl]methoxy}(hydroxy)phosphoryl]adenosine, Csm6
Authors:Jia, N, Patel, D.J.
Deposit date:2019-03-07
Release date:2019-07-31
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:CRISPR-Cas III-A Csm6 CARF Domain Is a Ring Nuclease Triggering Stepwise cA4Cleavage with ApA>p Formation Terminating RNase Activity.
Mol.Cell, 75, 2019
8UKE
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BU of 8uke by Molmil
Crystal Structure of Norbelladine O-methyltransferase variant in complex with SAH
Descriptor: CALCIUM ION, Norbelladine 4'-O-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Kim, W, Zhang, Y.J.
Deposit date:2023-10-12
Release date:2024-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Biosensor and machine learning-aided engineering of an amaryllidaceae enzyme.
Nat Commun, 15, 2024
7B0K
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BU of 7b0k by Molmil
membrane protein structure
Descriptor: CHOLINE ION, Drug/metabolite transporter (DMT) superfamily permease
Authors:Baerland, N, Perez, C.
Deposit date:2020-11-20
Release date:2022-03-16
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Mechanistic basis of choline import involved in teichoic acids and lipopolysaccharide modification.
Sci Adv, 8, 2022
6R8N
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BU of 6r8n by Molmil
STRUCTURE DETERMINATION OF THE TETRAHEDRAL AMINOPEPTIDASE TET2 FROM P. HORIKOSHII BY USE OF COMBINED SOLID-STATE NMR, SOLUTION-STATE NMR AND EM DATA 4.1 A, FOLLOWED BY REAL_SPACE_REFINEMENT AT 4.1 A
Descriptor: Tetrahedral aminopeptidase, ZINC ION
Authors:Colletier, J.-P, Gauto, D, Estrozi, L, Favier, A, Effantin, G, Schoehn, G, Boisbouvier, J, Schanda, P.
Deposit date:2019-04-02
Release date:2019-08-14
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (4.1 Å), SOLUTION NMR
Cite:Integrated NMR and cryo-EM atomic-resolution structure determination of a half-megadalton enzyme complex.
Nat Commun, 10, 2019
9AX6
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BU of 9ax6 by Molmil
Tricomplex of RMC-6236, KRAS G12D, and CypA
Descriptor: (1R,2S)-N-[(1P,7S,9S,13R,20M)-21-ethyl-20-{2-[(1R)-1-methoxyethyl]-5-(4-methylpiperazin-1-yl)pyridin-3-yl}-17,17-dimethyl-8,14-dioxo-15-oxa-4-thia-9,21,27,28-tetraazapentacyclo[17.5.2.1~2,5~.1~9,13~.0~22,26~]octacosa-1(24),2,5(28),19,22,25-hexaen-7-yl]-2-methylcyclopropane-1-carboxamide, GTPase KRas, MAGNESIUM ION, ...
Authors:Tomlinson, A.C.A, Saldajeno-Concar, M, Knox, J.E, Yano, J.K.
Deposit date:2024-03-05
Release date:2024-04-17
Last modified:2024-06-12
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Translational and Therapeutic Evaluation of RAS-GTP Inhibition by RMC-6236 in RAS-Driven Cancers.
Cancer Discov, 14, 2024
3DUE
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BU of 3due by Molmil
CRYSTAL STRUCTURE OF A PUTATIVE PERIPLASMIC PROTEIN FROM DUF2874 FAMILY (BVU_2987) FROM BACTEROIDES VULGATUS ATCC 8482 AT 1.85 A RESOLUTION
Descriptor: CACODYLATE ION, Putative periplasmic protein
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2008-07-17
Release date:2008-08-05
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The structure of BVU2987 from Bacteroides vulgatus reveals a superfamily of bacterial periplasmic proteins with possible inhibitory function.
Acta Crystallogr.,Sect.F, 66, 2010
7BNQ
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BU of 7bnq by Molmil
Lateral-closed conformation of the lid-locked BAM complex (BamA E435C S665C, BamBDCE) by cryoEM
Descriptor: Outer membrane protein assembly factor BamA, Outer membrane protein assembly factor BamB, Outer membrane protein assembly factor BamC, ...
Authors:Haysom, S.F.
Deposit date:2021-01-22
Release date:2021-06-02
Last modified:2021-07-21
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:The role of membrane destabilisation and protein dynamics in BAM catalysed OMP folding.
Nat Commun, 12, 2021
3DYC
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BU of 3dyc by Molmil
Structure of E322Y Alkaline Phosphatase in Complex with Inorganic Phosphate
Descriptor: Alkaline phosphatase, PHOSPHATE ION, ZINC ION
Authors:Zalatan, J.G, Fenn, T.D, Herschlag, D.
Deposit date:2008-07-25
Release date:2008-10-21
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.303 Å)
Cite:Comparative Enzymology in the Alkaline Phosphatase Superfamily to Determine the Catalytic Role of an Active-Site Metal Ion.
J.Mol.Biol., 384, 2008
6OB2
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BU of 6ob2 by Molmil
Crystal structure of wild-type KRAS (GMPPNP-bound) in complex with GAP-related domain (GRD) of neurofibromin (NF1)
Descriptor: CHLORIDE ION, GLYCEROL, GTPase KRas, ...
Authors:Tran, T.H, Dharmaiah, S, Simanshu, D.K.
Deposit date:2019-03-19
Release date:2019-10-16
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.845 Å)
Cite:KRAS G13D sensitivity to neurofibromin-mediated GTP hydrolysis.
Proc.Natl.Acad.Sci.USA, 116, 2019
6O6X
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BU of 6o6x by Molmil
Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization
Descriptor: Csm6, Cyclic RNA cA4
Authors:Jia, N, Patel, D.J.
Deposit date:2019-03-07
Release date:2019-07-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:CRISPR-Cas III-A Csm6 CARF Domain Is a Ring Nuclease Triggering Stepwise cA4Cleavage with ApA>p Formation Terminating RNase Activity.
Mol.Cell, 75, 2019
6T8O
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BU of 6t8o by Molmil
Stalled FtsK motor domain bound to dsDNA end
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA translocase FtsK, dsDNA substrate
Authors:Jean, N.L, Lowe, J.
Deposit date:2019-10-24
Release date:2019-11-20
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.99 Å)
Cite:FtsK in motion reveals its mechanism for double-stranded DNA translocation.
Proc.Natl.Acad.Sci.USA, 117, 2020
6O6S
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BU of 6o6s by Molmil
Crystal structure of Apo Csm6
Descriptor: Csm6
Authors:Jia, N, Patel, D.J.
Deposit date:2019-03-07
Release date:2019-07-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:CRISPR-Cas III-A Csm6 CARF Domain Is a Ring Nuclease Triggering Stepwise cA4Cleavage with ApA>p Formation Terminating RNase Activity.
Mol.Cell, 75, 2019
8UM2
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BU of 8um2 by Molmil
Carboxy terminus of Oleate Hydratase in phosphate buffer
Descriptor: Myosin-cross-reactive antigen
Authors:Grace, C.R, Radka, C.
Deposit date:2023-10-17
Release date:2024-01-31
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The carboxy terminus causes interfacial assembly of oleate hydratase on a membrane bilayer.
J.Biol.Chem., 300, 2024
8UM1
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BU of 8um1 by Molmil
Structure of the Carboxy terminus of Oleate Hydratase
Descriptor: Myosin-cross-reactive antigen
Authors:Grace, C.R, Radka, C.
Deposit date:2023-10-17
Release date:2024-01-31
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The carboxy terminus causes interfacial assembly of oleate hydratase on a membrane bilayer.
J.Biol.Chem., 300, 2024
8FHW
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BU of 8fhw by Molmil
Cryo-EM structure of Cryptococcus neoformans trehalose-6-phosphate synthase homotetramer in complex with uridine diphosphate and glucose-6-phosphate
Descriptor: 6-O-phosphono-alpha-D-glucopyranose, Alpha,alpha-trehalose-phosphate synthase (UDP-forming), URIDINE-5'-DIPHOSPHATE
Authors:Washington, E.J, Brennan, R.G.
Deposit date:2022-12-15
Release date:2023-12-20
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structures of trehalose-6-phosphate synthase, Tps1, from the fungal pathogen Cryptococcus neoformans : a target for novel antifungals.
Biorxiv, 2024
6OV0
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BU of 6ov0 by Molmil
Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6
Descriptor: RNA (5'-R(*AP*AP*AP*(A23))-3'), Uncharacterized protein
Authors:Jia, N, Patel, D.J.
Deposit date:2019-05-06
Release date:2019-07-31
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:CRISPR-Cas III-A Csm6 CARF Domain Is a Ring Nuclease Triggering Stepwise cA4Cleavage with ApA>p Formation Terminating RNase Activity.
Mol.Cell, 75, 2019
8GKF
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BU of 8gkf by Molmil
Phosphopantetheinyl transferase PptT from Mycobacterium tuberculosis in complex with Raltitrexed.
Descriptor: 4'-phosphopantetheinyl transferase PptT, TOMUDEX
Authors:Krieger, I.V, Singh, A, Sacchettini, J.C, TB Structural Genomics Consortium (TBSGC)
Deposit date:2023-03-18
Release date:2024-03-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Redirecting raltitrexed from cancer cell thymidylate synthase to Mycobacterium tuberculosis phosphopantetheinyl transferase.
Sci Adv, 10, 2024
6RK0
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BU of 6rk0 by Molmil
Structure of the Flavocytochrome Anf3 from Azotobacter vinelandii
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION, ...
Authors:Murray, J.W, Varghese, F, Kabasakal, B.
Deposit date:2019-04-29
Release date:2019-05-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (0.99 Å)
Cite:A low-potential terminal oxidase associated with the iron-only nitrogenase from the nitrogen-fixing bacteriumAzotobacter vinelandii.
J.Biol.Chem., 294, 2019
7S4U
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BU of 7s4u by Molmil
Cryo-EM structure of Cas9 in complex with 12-14MM DNA substrate, 5 minute time-point
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, Non-target strand, Target strand, ...
Authors:Bravo, J.P.K, Taylor, D.W, Liu, M.S, Johnson, K.A.
Deposit date:2021-09-09
Release date:2022-03-02
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.56 Å)
Cite:Structural basis for mismatch surveillance by CRISPR-Cas9.
Nature, 603, 2022
7S4V
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BU of 7s4v by Molmil
Cas9 bound to 12-14MM DNA, 60 min time-point, kinked conformation
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, NTS, TS, ...
Authors:Bravo, J.P.K, Taylor, D.W, Liu, M.S, Johnson, K.A.
Deposit date:2021-09-09
Release date:2022-03-02
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.28 Å)
Cite:Structural basis for mismatch surveillance by CRISPR-Cas9.
Nature, 603, 2022
7S4X
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BU of 7s4x by Molmil
Cas9:gRNA in complex with 18-20MM DNA, 1 minute time-point, kinked active conformation
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, MAGNESIUM ION, NTS, ...
Authors:Bravo, J.P.K, Taylor, D.W, Liu, M.S, Johnson, K.A.
Deposit date:2021-09-09
Release date:2022-03-02
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.76 Å)
Cite:Structural basis for mismatch surveillance by CRISPR-Cas9.
Nature, 603, 2022

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PDB entries from 2024-08-07

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