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PDB: 28 results

6PJV
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BU of 6pjv by Molmil
Structure of Human Sonic Hedgehog in complex with Zinc and Magnesium
Descriptor: CHLORIDE ION, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Bonn-Breach, R.B, Jenkins, J.L, Wedekind, J.E.
Deposit date:2019-06-28
Release date:2019-11-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Structure of Sonic Hedgehog protein in complex with zinc(II) and magnesium(II) reveals ion-coordination plasticity relevant to peptide drug design.
Acta Crystallogr D Struct Biol, 75, 2019
1VHH
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BU of 1vhh by Molmil
A POTENTIAL CATALYTIC SITE WITHIN THE AMINO-TERMINAL SIGNALLING DOMAIN OF SONIC HEDGEHOG
Descriptor: SONIC HEDGEHOG, SULFATE ION, ZINC ION
Authors:Hall, T.M.T, Porter, J.A, Beachy, P.A, Leahy, D.J.
Deposit date:1995-10-03
Release date:1996-01-29
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A potential catalytic site revealed by the 1.7-A crystal structure of the amino-terminal signalling domain of Sonic hedgehog.
Nature, 378, 1995
4C4M
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BU of 4c4m by Molmil
Crystal structure of the Sonic Hedgehog-chondroitin-4-sulphate complex
Descriptor: ACETATE ION, CALCIUM ION, SONIC HEDGEHOG PROTEIN, ...
Authors:Whalen, D.M, Malinauskas, T, Gilbert, R.J.C, Siebold, C.
Deposit date:2013-09-05
Release date:2013-10-02
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structural Insights Into Proteoglycan-Shaped Hedgehog Signaling.
Proc.Natl.Acad.Sci.USA, 110, 2013
3MXW
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BU of 3mxw by Molmil
Crystal structure Sonic hedgehog bound to the 5E1 fab fragment
Descriptor: 5E1 heavy chain, 5E1 light chain, CALCIUM ION, ...
Authors:Hymowitz, S.G, Maun, H.R.
Deposit date:2010-05-07
Release date:2010-05-26
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Hedgehog pathway antagonist 5E1 binds hedgehog at the pseudo-active site.
J.Biol.Chem., 285, 2010
3M1N
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BU of 3m1n by Molmil
Crystal structure of Human Sonic Hedgehog N-terminal domain
Descriptor: SULFATE ION, Sonic hedgehog protein, ZINC ION
Authors:Boriack-Sjodin, P.A, Pepinsky, R.B, Garber, E.A, Silvian, L.F.
Deposit date:2010-03-05
Release date:2010-03-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Mapping sonic hedgehog-receptor interactions by steric interference.
J.Biol.Chem., 275, 2000
4C4N
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BU of 4c4n by Molmil
Crystal structure of the Sonic Hedgehog-heparin complex
Descriptor: 2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose, 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid, CALCIUM ION, ...
Authors:Whalen, D.M, Malinauskas, T, Gilbert, R.J.C, Siebold, C.
Deposit date:2013-09-05
Release date:2013-10-02
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Structural Insights Into Proteoglycan-Shaped Hedgehog Signaling.
Proc.Natl.Acad.Sci.USA, 110, 2013
3N1R
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BU of 3n1r by Molmil
Crystal Structure of ShhN
Descriptor: CALCIUM ION, Sonic hedgehog protein, ZINC ION
Authors:Kavran, J.M, Leahy, D.J.
Deposit date:2010-05-16
Release date:2010-06-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Crystal Structure of ShhN
TO BE PUBLISHED
8YYZ
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BU of 8yyz by Molmil
Crystal structure of Sonic hedgehog in complex with antibody 5E1 mutant H-R102A in the absence of metals
Descriptor: CHLORIDE ION, GLYCEROL, Heavy chain antibody 5E1 mutated, ...
Authors:Caaveiro, J.M.M, Senoo, A, Kaneda, I, Tsumoto, K.
Deposit date:2024-04-04
Release date:2025-04-09
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Biophysical insights to improve affinity of antibodies to fluctuated epitope of antigen: A case of anti-Shh antibody 5E1 against Shh antigen.
To Be Published
8Z39
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BU of 8z39 by Molmil
Crystal structure of Sonic hedgehog in complex with antibody 5E1 mutant L-T56A with metals
Descriptor: CALCIUM ION, CHLORIDE ION, Heavy chain of antibody 5E1, ...
Authors:Caaveiro, J.M.M, Kaneda, I, Tsumoto, K.
Deposit date:2024-04-14
Release date:2025-04-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Biophysical insights to improve affinity of antibodies to fluctuated epitope of antigen: A case of anti-Shh antibody 5E1 against Shh antigen.
To Be Published
8Z2V
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BU of 8z2v by Molmil
Crystal structure of Sonic hedgehog in complex with antibody 5E1 mutant H-R102A with metals
Descriptor: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
Authors:Caaveiro, J.M.M, Kaneda, I, Tsumoto, K.
Deposit date:2024-04-13
Release date:2025-04-16
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Biophysical insights to improve affinity of antibodies to fluctuated epitope of antigen: A case of anti-Shh antibody 5E1 against Shh antigen.
To Be Published
8Z3A
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BU of 8z3a by Molmil
Crystal structure of Sonic hedgehog in complex with antibody 5E1 without metals
Descriptor: GLYCEROL, Heavy chain of antibody 5E1, Light chain of antibody 5E1, ...
Authors:Caaveiro, J.M.M, Kaneda, I, Tsumoto, K.
Deposit date:2024-04-15
Release date:2025-04-16
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Biophysical insights to improve affinity of antibodies to fluctuated epitope of antigen: A case of anti-Shh antibody 5E1 against Shh antigen.
To Be Published
7MHZ
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BU of 7mhz by Molmil
Human Hedgehog acyltransferase (HHAT) in complex with a palmitoylated Hedgehog peptide product and a Fab antibody fragment
Descriptor: 3H02 Fab heavy chain, 3H02 Fab light chain, Digitonin, ...
Authors:Long, S.B, Jiang, Y.
Deposit date:2021-04-16
Release date:2021-06-16
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Substrate and product complexes reveal mechanisms of Hedgehog acylation by HHAT.
Science, 372, 2021
7RHQ
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BU of 7rhq by Molmil
Cryo-EM structure of Xenopus Patched-1 in complex with GAS1 and Sonic Hedgehog
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Huang, P, Lian, T, Wierbowski, B, Garcia-Linares, S, Jiang, J, Salic, A.
Deposit date:2021-07-18
Release date:2022-03-02
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.53 Å)
Cite:Structural basis for catalyzed assembly of the Sonic hedgehog-Patched1 signaling complex.
Dev.Cell, 57, 2022
7URF
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BU of 7urf by Molmil
Human HHAT H379C in complex with SHH N-terminal peptide
Descriptor: 3H02 heavy chain, 3H02 light chain, Digitonin, ...
Authors:Liu, Y, Qi, X, Li, X.
Deposit date:2022-04-21
Release date:2022-07-20
Last modified:2025-05-28
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Mechanisms and inhibition of Porcupine-mediated Wnt acylation.
Nature, 607, 2022
3HO5
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BU of 3ho5 by Molmil
Crystal structure of Hedgehog-interacting protein (HHIP) and Sonic hedgehog (SHH) complex
Descriptor: CALCIUM ION, Hedgehog-interacting protein, Sonic hedgehog protein, ...
Authors:Hymowitz, S.G, Bosanac, I.
Deposit date:2009-06-01
Release date:2009-06-23
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:The structure of SHH in complex with HHIP reveals a recognition role for the Shh pseudo active site in signaling.
Nat.Struct.Mol.Biol., 16, 2009
7E2I
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BU of 7e2i by Molmil
Cryo-EM structure of hDisp1NNN-ShhN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL HEMISUCCINATE, Protein dispatched homolog 1, ...
Authors:Li, W, Wang, L, Gong, X.
Deposit date:2021-02-05
Release date:2021-12-08
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (4.07 Å)
Cite:Structural insights into proteolytic activation of the human Dispatched1 transporter for Hedgehog morphogen release.
Nat Commun, 12, 2021
7RPK
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BU of 7rpk by Molmil
Cryo-EM structure of murine Dispatched in complex with Sonic hedgehog
Descriptor: (2S)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(hexanoyloxy)propyl hexanoate, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Asarnow, D, Wang, Q, Ding, K, Cheng, Y, Beachy, P.A.
Deposit date:2021-08-03
Release date:2021-10-27
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Dispatched uses Na + flux to power release of lipid-modified Hedgehog.
Nature, 599, 2021
3D1M
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BU of 3d1m by Molmil
Crystal Structure of Sonic Hedgehog Bound to the third FNIII domain of CDO
Descriptor: CALCIUM ION, Cell adhesion molecule, Sonic hedgehog protein, ...
Authors:McLellan, J.S, Leahy, D.J.
Deposit date:2008-05-06
Release date:2008-09-23
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The mode of Hedgehog binding to Ihog homologues is not conserved across different phyla.
Nature, 455, 2008
6DMY
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BU of 6dmy by Molmil
Cryo-EM structure of human Ptch1 and ShhN complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Yan, N, Gong, X, Qian, H.W.
Deposit date:2018-06-05
Release date:2018-07-11
Last modified:2025-05-14
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural basis for the recognition of Sonic Hedgehog by human Patched1.
Science, 361, 2018
6E1H
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BU of 6e1h by Molmil
Structure of 2:1 human Ptch1-Shh-N complex
Descriptor: CALCIUM ION, PALMITIC ACID, Protein patched homolog 1, ...
Authors:Qi, X, Li, X.
Deposit date:2018-07-09
Release date:2018-08-29
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Two Patched molecules engage distinct sites on Hedgehog yielding a signaling-competent complex.
Science, 362, 2018
2WG4
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BU of 2wg4 by Molmil
Crystal structure of the complex between human hedgehog-interacting protein HIP and sonic hedgehog without calcium
Descriptor: HEDGEHOG-INTERACTING PROTEIN, SODIUM ION, SONIC HEDGEHOG PROTEIN N-PRODUCT, ...
Authors:Bishop, B, Aricescu, A.R, Harlos, K, O'Callaghan, C.A, Jones, E.Y, Siebold, C.
Deposit date:2009-04-15
Release date:2009-06-30
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Structural Insights Into Hedgehog Ligand Sequestration by the Human Hedgehog-Interacting Protein Hip
Nat.Struct.Mol.Biol., 16, 2009
2WFX
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BU of 2wfx by Molmil
Crystal structure of the complex between human hedgehog-interacting protein HIP and Sonic Hedgehog in the presence of calcium
Descriptor: CALCIUM ION, HEDGEHOG-INTERACTING PROTEIN, SODIUM ION, ...
Authors:Bishop, B, Aricescu, A.R, Harlos, K, O'Callaghan, C.A, Jones, E.Y, Siebold, C.
Deposit date:2009-04-15
Release date:2009-06-30
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural Insights Into Hedgehog Ligand Sequestration by the Human Hedgehog-Interacting Protein Hip
Nat.Struct.Mol.Biol., 16, 2009
6RMG
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BU of 6rmg by Molmil
Structure of PTCH1 bound to a modified Hedgehog ligand ShhN-C24II
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL HEMISUCCINATE, ...
Authors:Korkhov, V.M, Qi, C.
Deposit date:2019-05-06
Release date:2019-10-09
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis of sterol recognition by human hedgehog receptor PTCH1.
Sci Adv, 5, 2019
6RVD
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BU of 6rvd by Molmil
Revised cryo-EM structure of the human 2:1 Ptch1-Shh complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:El Omari, K, Rudolf, A.F, Kowatsch, C, Malinauskas, T, Kinnebrew, M, Ansell, T.B, Bishop, B, Pardon, E, Schwab, R.A, Qian, M, Duman, R, Covey, D.F, Steyaert, J, Wagner, A, Sansom, M.S.P, Rohatgi, R, Siebold, C.
Deposit date:2019-05-31
Release date:2019-10-02
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:The morphogen Sonic hedgehog inhibits its receptor Patched by a pincer grasp mechanism.
Nat.Chem.Biol., 15, 2019
6N7H
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BU of 6n7h by Molmil
Cryo-EM structure of the 2:1 hPtch1-Shhp complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Yan, N, Gong, X, Qian, H.W.
Deposit date:2018-11-27
Release date:2019-05-29
Last modified:2025-05-14
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Inhibition of tetrameric Patched1 by Sonic Hedgehog through an asymmetric paradigm.
Nat Commun, 10, 2019

 

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