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PDB: 88 results

6OMT
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BU of 6omt by Molmil
HIV-1 capsid hexamer R18D mutant
Descriptor: Capsid protein
Authors:Huang, P, Summers, B.J, Xiong, Y.
Deposit date:2019-04-19
Release date:2019-08-21
Last modified:2019-11-27
Method:X-RAY DIFFRACTION (2.052 Å)
Cite:FEZ1 Is Recruited to a Conserved Cofactor Site on Capsid to Promote HIV-1 Trafficking.
Cell Rep, 28, 2019
8C9H
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BU of 8c9h by Molmil
AQP7_inhibitor
Descriptor: Aquaporin-7, ethyl 4-[(4-pyrazol-1-ylphenyl)methylcarbamoylamino]benzoate
Authors:Huang, P, Venskutonyte, R, Gourdon, P, Lindkvist-Petersson, K.
Deposit date:2023-01-22
Release date:2024-01-31
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Molecular basis for human aquaporin inhibition.
Proc.Natl.Acad.Sci.USA, 121, 2024
4ZN8
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BU of 4zn8 by Molmil
Using molecular dynamics simulations to predict domain swapping of computationally designed protein variants
Descriptor: POTASSIUM ION, computationally modified engrailed homeodomain
Authors:Huang, P.-S, Thomas, L.M, Mayo, S.L.
Deposit date:2015-05-04
Release date:2015-05-27
Last modified:2019-11-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:Using Molecular Dynamics Simulations as an Aid in the Prediction of Domain Swapping of Computationally Designed Protein Variants.
J.Mol.Biol., 427, 2015
5KZY
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BU of 5kzy by Molmil
Crystal structure of the xenopus Smoothened cysteine-rich domain (CRD) in complex with cyclopamine
Descriptor: Cyclopamine, Smoothened
Authors:Huang, P, Kim, Y, Salic, A.
Deposit date:2016-07-25
Release date:2016-08-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.484 Å)
Cite:Cellular Cholesterol Directly Activates Smoothened in Hedgehog Signaling.
Cell, 166, 2016
5KZV
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BU of 5kzv by Molmil
Crystal structure of the xenopus Smoothened cysteine-rich domain (CRD) in complex with 20(S)-hydroxycholesterol
Descriptor: (3alpha,8alpha)-cholest-5-ene-3,20-diol, Smoothened
Authors:Huang, P, Kim, Y, Salic, A.
Deposit date:2016-07-25
Release date:2016-08-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.616 Å)
Cite:Cellular Cholesterol Directly Activates Smoothened in Hedgehog Signaling.
Cell, 166, 2016
5KZZ
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Crystal structure of the xenopus Smoothened cysteine-rich domain (CRD) in its apo-form
Descriptor: ACETATE ION, GLYCEROL, Smoothened, ...
Authors:Huang, P, Kim, Y, Salic, A.
Deposit date:2016-07-25
Release date:2016-08-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.332 Å)
Cite:Cellular Cholesterol Directly Activates Smoothened in Hedgehog Signaling.
Cell, 166, 2016
7RHR
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BU of 7rhr by Molmil
Cryo-EM structure of Xenopus Patched-1 in nanodisc
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, ...
Authors:Huang, P, Lian, T, Jiang, J, Salic, A.
Deposit date:2021-07-18
Release date:2022-03-02
Last modified:2022-03-23
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural basis for catalyzed assembly of the Sonic hedgehog-Patched1 signaling complex.
Dev.Cell, 57, 2022
7RHQ
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BU of 7rhq by Molmil
Cryo-EM structure of Xenopus Patched-1 in complex with GAS1 and Sonic Hedgehog
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Huang, P, Lian, T, Wierbowski, B, Garcia-Linares, S, Jiang, J, Salic, A.
Deposit date:2021-07-18
Release date:2022-03-02
Last modified:2022-03-23
Method:ELECTRON MICROSCOPY (3.53 Å)
Cite:Structural basis for catalyzed assembly of the Sonic hedgehog-Patched1 signaling complex.
Dev.Cell, 57, 2022
1T7K
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BU of 1t7k by Molmil
Crystal Structure of HIV Protease complexed with Arylsulfonamide azacyclic urea
Descriptor: 3-({5-BENZYL-6-HYDROXY-2,4-BIS-(4-HYDROXY-BENZYL)-3-OXO-[1,2,4]-TRIAZEPANE-1-SULFONYL)-BENZONITRILE, Pol polyprotein [Contains: Protease (Retropepsin)]
Authors:Huang, P.P, Randolph, J.T, Klein, L.L, Vasavanonda, S, Dekhtyar, T, Stoll, V.S, Kempf, D.J.
Deposit date:2004-05-10
Release date:2004-10-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Synthesis and Antiviral Activity of P1' Arylsulfonamide Azacyclic Urea HIV Protease Inhibitors
Bioorg.Med.Chem.Lett., 14, 2004
6D35
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BU of 6d35 by Molmil
Crystal structure of Xenopus Smoothened in complex with cholesterol
Descriptor: CHOLESTEROL, Smoothened,Soluble cytochrome b562,Smoothened
Authors:Huang, P, Zheng, S, Kim, Y, Kruse, A.C, Salic, A.
Deposit date:2018-04-14
Release date:2018-05-23
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Structural Basis of Smoothened Activation in Hedgehog Signaling.
Cell, 174, 2018
6D32
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BU of 6d32 by Molmil
Crystal structure of Xenopus Smoothened in complex with cyclopamine
Descriptor: Cyclopamine, Smoothened,Soluble cytochrome b562,Smoothened
Authors:Huang, P, Zheng, S, Kim, Y, Kruse, A.C, Salic, A.
Deposit date:2018-04-14
Release date:2018-05-23
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.751 Å)
Cite:Structural Basis of Smoothened Activation in Hedgehog Signaling.
Cell, 174, 2018
4S14
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BU of 4s14 by Molmil
Crystal structure of the orphan nuclear receptor RORgamma ligand-binding domain in complex with 4alpha-caboxyl, 4beta-methyl-zymosterol (4ACD8)
Descriptor: (3beta,4alpha,5beta,14beta)-3-hydroxy-4-methylcholesta-8,24-diene-4-carboxylic acid, Nuclear receptor ROR-gamma, Nuclear receptor-interacting protein 1
Authors:Huang, P, Santori, F.R, Littman, D.R, Rastinejad, F.
Deposit date:2015-01-07
Release date:2015-02-11
Last modified:2015-02-25
Method:X-RAY DIFFRACTION (3.542 Å)
Cite:Identification of Natural ROR gamma Ligands that Regulate the Development of Lymphoid Cells.
Cell Metab, 21, 2015
4S15
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BU of 4s15 by Molmil
Crystal structure of the orphan nuclear receptor RORalpha ligand-binding domain in complex with 4alpha-caboxyl, 4beta-methyl-zymosterol (4ACD8)
Descriptor: (3beta,4alpha,5beta,14beta)-3-hydroxy-4-methylcholesta-8,24-diene-4-carboxylic acid, GLYCEROL, Nuclear receptor ROR-alpha, ...
Authors:Huang, P, Santori, F.R, Littman, D.R, Rastinejad, F.
Deposit date:2015-01-08
Release date:2015-02-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.897 Å)
Cite:Identification of Natural ROR gamma Ligands that Regulate the Development of Lymphoid Cells.
Cell Metab, 21, 2015
7W85
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BU of 7w85 by Molmil
Structural of the filamentous Escherichia coli glutamine synthetase
Descriptor: Glutamine synthetase, NICKEL (II) ION
Authors:Huang, P.-C, Chen, S.-K, Wu, K.-P.
Deposit date:2021-12-07
Release date:2022-04-06
Last modified:2022-06-15
Method:ELECTRON MICROSCOPY (2.94 Å)
Cite:Structural basis for the helical filament formation of Escherichia coli glutamine synthetase.
Protein Sci., 31, 2022
5K3N
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BU of 5k3n by Molmil
Crystal structure of Retinoic acid receptor-related orphan receptor (ROR) gamma ligand binding domain complex with ML209
Descriptor: (3S)-3-(2H-1,3-benzodioxol-5-yl)-1-[(3R,5S)-3,5-dimethylpiperidin-1-yl]-3-(2-hydroxy-4,6-dimethoxyphenyl)propan-1-one, Nuclear receptor ROR-gamma
Authors:Huang, P, Rastinejad, F, Lu, J.
Deposit date:2016-05-19
Release date:2017-05-31
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.666 Å)
Cite:Crystal structure of Retinoic acid receptor-related orphan receptor (ROR) gamma ligand binding domain complex with ML209
To be published
7VGB
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BU of 7vgb by Molmil
Crystal structure of apo prolyl oligopeptidase from Microbulbifer arenaceous
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Huang, P, Jiang, Z.Q.
Deposit date:2021-09-15
Release date:2022-05-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.227 Å)
Cite:The structure and molecular dynamics of prolyl oligopeptidase from Microbulbifer arenaceous provide insights into catalytic and regulatory mechanisms.
Acta Crystallogr D Struct Biol, 78, 2022
8AMW
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BU of 8amw by Molmil
AQP7 dimer of tetramers_C1
Descriptor: Aquaporin-7, GLYCEROL
Authors:Huang, P, Venskutonyte, R, Fan, X, Li, P, Yan, N, Gourdon, P, Lindkvist-Petersson, K.
Deposit date:2022-08-04
Release date:2023-02-15
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Cryo-EM structure supports a role of AQP7 as a junction protein.
Nat Commun, 14, 2023
8AMX
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BU of 8amx by Molmil
AQP7 dimer of tetramers_D4
Descriptor: Aquaporin-7
Authors:Huang, P, Venskutonyte, R, Fan, X, Li, P, Yan, N, Gourdon, P, Lindkvist-Petersson, K.
Deposit date:2022-08-04
Release date:2023-02-15
Method:ELECTRON MICROSCOPY (2.55 Å)
Cite:Cryo-EM structure supports a role of AQP7 as a junction protein.
Nat Commun, 14, 2023
7VGC
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BU of 7vgc by Molmil
Crystal structure of prolyl oligopeptidase from Microbulbifer arenaceous complex with a transition state analog inhibitor ZPR
Descriptor: CHLORIDE ION, N-BENZYLOXYCARBONYL-L-PROLYL-L-PROLINAL, prolyl oligopeptidase
Authors:Huang, P, Yang, S.Q, Jiang, Z.Q.
Deposit date:2021-09-15
Release date:2022-05-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.722 Å)
Cite:The structure and molecular dynamics of prolyl oligopeptidase from Microbulbifer arenaceous provide insights into catalytic and regulatory mechanisms.
Acta Crystallogr D Struct Biol, 78, 2022
5K3M
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BU of 5k3m by Molmil
Crystal structure of Retinoic acid receptor-related orphan receptor (ROR) gamma ligand binding domain complex with UUA
Descriptor: Nuclear receptor ROR-gamma, Ursolic acid
Authors:Huang, P, Rastinejad, F.
Deposit date:2016-05-19
Release date:2017-05-31
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.894 Å)
Cite:Crystal structure of Retinoic acid receptor-related orphan receptor (ROR) gamma ligand binding domain complex with UUA
To be published
7Y1S
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BU of 7y1s by Molmil
Crystal structure of apo leucyl aminopeptidase from Bacillus amyloliquefaciens
Descriptor: CARBONATE ION, NICKEL (II) ION, ZINC ION, ...
Authors:Huang, P, Jiang, Z.Q.
Deposit date:2022-06-08
Release date:2023-07-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.748 Å)
Cite:Crystal structure of apo leucyl aminopeptidase from Bacillus amyloliquefaciens
To Be Published
7Y1X
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BU of 7y1x by Molmil
Crystal structure of prolyl oligopeptidase from Microbulbifer arenaceous complex with PEG400 and MES
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, PENTAETHYLENE GLYCOL, ...
Authors:Huang, P, Jiang, Z.Q.
Deposit date:2022-06-09
Release date:2023-07-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Crystal structure of prolyl oligopeptidase from Microbulbifer arenaceous complex with PEG400 and MES
To Be Published
5K3L
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BU of 5k3l by Molmil
Crystal structure of Retinoic acid receptor-related orphan receptor (ROR) gamma ligand binding domain complex with 444
Descriptor: N-(2,2,2-TRIFLUOROETHYL)-N-{4-[2,2,2-TRIFLUORO-1-HYDROXY-1-(TRIFLUOROMETHYL)ETHYL]PHENYL}BENZENESULFONAMIDE, Nuclear receptor ROR-gamma
Authors:Huang, P, Rastinejad, F.
Deposit date:2016-05-19
Release date:2017-05-31
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal structure of Retinoic acid receptor-related orphan receptor (ROR) gamma ligand binding domain complex with 444
To be published
7MCD
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BU of 7mcd by Molmil
Crystal structure of an AI-designed TIM-barrel F15C
Descriptor: AI-designed TIM-barrel F15C
Authors:Mathews, I.I, Anand-Achim, N, Perez, C.P, Huang, P.
Deposit date:2021-04-02
Release date:2022-01-19
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Protein sequence design with a learned potential.
Nat Commun, 13, 2022
6ZV9
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BU of 6zv9 by Molmil
Terbium(III)-bound de novo TIM barrel-ferredoxin fold fusion dimer with 4-glutamate binding site and tryptophan antenna (TFD-EE N6W)
Descriptor: 1,2-ETHANEDIOL, TERBIUM(III) ION, TFD-EE
Authors:Caldwell, S, Haydon, I, Piperidou, N, Huang, P, Hilvert, D, Baker, D, Zeymer, C.
Deposit date:2020-07-24
Release date:2020-11-25
Last modified:2020-12-16
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Tight and specific lanthanide binding in a de novo TIM barrel with a large internal cavity designed by symmetric domain fusion.
Proc.Natl.Acad.Sci.USA, 117, 2020

 

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