Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6NNT
DownloadVisualize
BU of 6nnt by Molmil
Xanthomonas citri Dephospho-PGM in complex with glucose-1,6-bisphosphate
分子名称: 1,6-di-O-phosphono-alpha-D-glucopyranose, MAGNESIUM ION, Phosphoglucomutase
著者Stiers, K.M, Beamer, L.J.
登録日2019-01-15
公開日2019-04-10
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Structural and dynamical description of the enzymatic reaction of a phosphohexomutase.
Struct Dyn., 6, 2019
6D0Q
DownloadVisualize
BU of 6d0q by Molmil
Structure of a DNA retention-prone PCNA variant
分子名称: Proliferating cell nuclear antigen
著者Kelch, B.A, Gaubitz, C.
登録日2018-04-10
公開日2019-05-15
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.80051017 Å)
主引用文献Effective mismatch repair depends on timely control of PCNA retention on DNA by the Elg1 complex.
Nucleic Acids Res., 47, 2019
6WXE
DownloadVisualize
BU of 6wxe by Molmil
Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Upright conformation
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Intermediate capsid protein VP6, ...
著者Herrmann, T, Harrison, S.C, Jenni, S.
登録日2020-05-10
公開日2021-01-20
最終更新日2021-03-10
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Functional refolding of the penetration protein on a non-enveloped virus.
Nature, 590, 2021
8EM7
DownloadVisualize
BU of 8em7 by Molmil
Cryo-EM structure of LRP2 at pH 5.2
分子名称: 2-acetamido-2-deoxy-beta-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Beenken, A, Cerutti, G, Fitzpatrick, A.W, Barasch, J, Shapiro, L.
登録日2022-09-27
公開日2023-02-08
最終更新日2023-03-08
実験手法ELECTRON MICROSCOPY (2.97 Å)
主引用文献Structures of LRP2 reveal a molecular machine for endocytosis.
Cell, 186, 2023
8EM4
DownloadVisualize
BU of 8em4 by Molmil
Cryo-EM structure of LRP2 at pH 7.5
分子名称: 2-acetamido-2-deoxy-beta-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Beenken, A, Cerutti, G, Brasch, J, Fitzpatrick, A.W, Barasch, J, Shapiro, L.
登録日2022-09-26
公開日2023-02-08
最終更新日2023-03-08
実験手法ELECTRON MICROSCOPY (2.83 Å)
主引用文献Structures of LRP2 reveal a molecular machine for endocytosis.
Cell, 186, 2023
6XUX
DownloadVisualize
BU of 6xux by Molmil
Crystal structure of Megabody Mb-Nb207-cYgjK_NO
分子名称: CALCIUM ION, Nanobody,Glucosidase YgjK,Glucosidase YgjK,Nanobody
著者Steyaert, J, Uchanski, T, Fischer, B.
登録日2020-01-21
公開日2021-01-13
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.90000641 Å)
主引用文献Megabodies expand the nanobody toolkit for protein structure determination by single-particle cryo-EM.
Nat.Methods, 18, 2021
5J74
DownloadVisualize
BU of 5j74 by Molmil
Fluorogen activating protein AM2.2 in complex with TO1-2p
分子名称: 1-(17-amino-5,8-dioxo-12,15-dioxa-4,9-diazaheptadecan-1-yl)-4-{[3-(3-sulfopropyl)-1,3-benzothiazol-3-ium-2-yl]methyl}quinolin-1-ium, PHOSPHATE ION, scFv AM2.2
著者Stanfield, R.L, Wilson, I.A, Wu, Y.
登録日2016-04-05
公開日2016-05-25
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Discovery of Small-Molecule Nonfluorescent Inhibitors of Fluorogen-Fluorogen Activating Protein Binding Pair.
J Biomol Screen, 21, 2016
6XV8
DownloadVisualize
BU of 6xv8 by Molmil
Crystal structure of Megabody Mb-Nb207-c7HopQ_G10
分子名称: Outer membrane protein
著者Steyaert, J, Uchanski, T, Fischer, B.
登録日2020-01-21
公開日2021-01-13
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Megabodies expand the nanobody toolkit for protein structure determination by single-particle cryo-EM.
Nat.Methods, 18, 2021
6MZN
DownloadVisualize
BU of 6mzn by Molmil
Zebrafish betaglycan orphan domain structure from tetragonal crystal form
分子名称: Transforming growth factor beta receptor III
著者Hinck, A.P, Kim, S.
登録日2018-11-05
公開日2019-08-21
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Structural Adaptation in Its Orphan Domain Engenders Betaglycan with an Alternate Mode of Growth Factor Binding Relative to Endoglin.
Structure, 27, 2019
6XTU
DownloadVisualize
BU of 6xtu by Molmil
FULL-LENGTH LTTR LYSG FROM CORYNEBACTERIUM GLUTAMICUM
分子名称: Lysine export transcriptional regulatory protein LysG
著者Hofmann, E, Syberg, F, Schlicker, C, Eggeling, L, Schendzielorz, G.
登録日2020-01-16
公開日2020-10-07
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.52 Å)
主引用文献Engineering and application of a biosensor with focused ligand specificity.
Nat Commun, 11, 2020
6XUT
DownloadVisualize
BU of 6xut by Molmil
Crystallographic structure of oligosaccharide dehydrogenase from Pycnoporus cinnabarinus, ligand-free form
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Cerutti, G, Savino, C, Montemiglio, L.C, Sciara, G, Vallone, B.
登録日2020-01-21
公開日2021-02-03
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure and functional characterization of an oligosaccharide dehydrogenase from Pycnoporus cinnabarinus provides insights into fungal breakdown of lignocellulose.
Biotechnol Biofuels, 14, 2021
8EQS
DownloadVisualize
BU of 8eqs by Molmil
Structure of SARS-CoV-1 Orf3a in late endosome/lysosome-like environment, MSP1D1 nanodisc
分子名称: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Apolipoprotein A-I, ORF3a protein
著者Miller, A.N, Houlihan, P.R, Matamala, E, Cabezas-Bratesco, D, Lee, G.Y, Cristofori-Armstrong, B, Dilan, T.L, Sanchez-Martinez, S, Matthies, D, Yan, R, Yu, Z, Ren, D, Brauchi, S.E, Clapham, D.E.
登録日2022-10-09
公開日2023-02-08
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献The SARS-CoV-2 accessory protein Orf3a is not an ion channel, but does interact with trafficking proteins.
Elife, 12, 2023
4RWP
DownloadVisualize
BU of 4rwp by Molmil
Crystal structure of porcine OAS1 in complex with dsRNA
分子名称: 2'-5'-oligoadenylate synthase 1, RNA (5'-R(*GP*GP*CP*UP*UP*UP*UP*GP*AP*CP*CP*UP*UP*UP*AP*UP*GP*AP*A)-3'), RNA (5'-R(*UP*UP*CP*AP*UP*AP*AP*AP*GP*GP*UP*CP*AP*AP*AP*AP*GP*CP*C)-3')
著者Lohoefener, J, Steinke, N, Kay-Fedorov, P, Baruch, P, Nikulin, A, Tishchenko, S, Manstein, D.J, Fedorov, R.
登録日2014-12-05
公開日2015-05-20
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献The Activation Mechanism of 2'-5'-Oligoadenylate Synthetase Gives New Insights Into OAS/cGAS Triggers of Innate Immunity.
Structure, 23, 2015
6WZQ
DownloadVisualize
BU of 6wzq by Molmil
Structure of SARS-CoV-2 Nucleocapsid dimerization domain, P21 form
分子名称: Nucleoprotein, SULFATE ION
著者Ye, Q, Corbett, K.D.
登録日2020-05-14
公開日2020-05-27
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Architecture and self-assembly of the SARS-CoV-2 nucleocapsid protein.
Protein Sci., 29, 2020
6N87
DownloadVisualize
BU of 6n87 by Molmil
Plasmodium falciparum FVO apical membrane antigen 1 (AMA1) bound to MTSL spin-labelled cyclised RON2 peptide
分子名称: Apical membrane antigen-1, S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate, backbone-cyclised peptide bcRON2hp
著者McGowan, S, Drinkwater, N.
登録日2018-11-28
公開日2019-01-30
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.588 Å)
主引用文献Identification of the Binding Site of Apical Membrane Antigen 1 (AMA1) Inhibitors Using a Paramagnetic Probe.
ChemMedChem, 14, 2019
6BYF
DownloadVisualize
BU of 6byf by Molmil
Crystal structure of the core catalytic domain of PP-IP phosphatase SIW14 from S. cerevisiae in complex with citrate
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, CITRIC ACID, ...
著者Wang, H, Shears, S.B.
登録日2017-12-20
公開日2018-03-21
最終更新日2022-03-16
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structural and biochemical characterization of Siw14: A protein-tyrosine phosphatase fold that metabolizes inositol pyrophosphates.
J. Biol. Chem., 293, 2018
5KQA
DownloadVisualize
BU of 5kqa by Molmil
Crystal structure of buckwheat glutaredoxin-glutathione complex
分子名称: GLUTATHIONE, Glutaredoxin-glutathione complex
著者Zhang, X, Wang, W, Zhao, Y, Wang, Z, Wang, H.
登録日2016-07-06
公開日2017-07-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structural insights into the binding of buckwheat glutaredoxin with GSH and regulation of its catalytic activity
J. Inorg. Biochem., 173, 2017
6N60
DownloadVisualize
BU of 6n60 by Molmil
Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA and Microcin J25 (MccJ25)
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Braffman, N, Hauver, J, Campbell, E.A, Darst, S.A.
登録日2018-11-23
公開日2019-01-09
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.68 Å)
主引用文献Structural mechanism of transcription inhibition by lasso peptides microcin J25 and capistruin.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
3B9V
DownloadVisualize
BU of 3b9v by Molmil
Crystal Structure of an Autonomous VH Domain
分子名称: heavy chain variable domain
著者Appleton, B.A, Barthelemy, P.A, Wiesmann, C.
登録日2007-11-06
公開日2007-11-20
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Comprehensive Analysis of the Factors Contributing to the Stability and Solubility of Autonomous Human VH Domains.
J.Biol.Chem., 283, 2008
5KVC
DownloadVisualize
BU of 5kvc by Molmil
Thermostable mutant of halohydrin dehalogenase (HheC)
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Halohydrin dehalogenase, ...
著者Dal Lago, M, Terwisscha van Scheltinga, A.C.
登録日2016-07-14
公開日2017-01-11
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.501 Å)
主引用文献A robust cosolvent-compatible halohydrin dehalogenase by computational library design.
Protein Eng. Des. Sel., 30, 2017
6N9P
DownloadVisualize
BU of 6n9p by Molmil
Discovery of affinity-based probes for Btk occupancy assay
分子名称: N-(3-{[2-amino-3-(4-phenoxyphenyl)pyridin-4-yl]oxy}phenyl)propanamide, Tyrosine-protein kinase BTK
著者Mochalkin, I.
登録日2018-12-03
公開日2019-02-06
実験手法X-RAY DIFFRACTION (2.23 Å)
主引用文献Discovery of Affinity-Based Probes for Btk Occupancy Assays.
ChemMedChem, 14, 2019
6MWM
DownloadVisualize
BU of 6mwm by Molmil
Bat coronavirus HKU4 SUD-C
分子名称: Non-structural protein 3
著者Staup, A.J, De Silva, I.U, Catt, J.T, Tan, X, Hammond, R.G, Johnson, M.A.
登録日2018-10-29
公開日2019-09-11
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure of the SARS-Unique Domain C From the Bat Coronavirus HKU4.
Nat Prod Commun, 14, 2019
6WWZ
DownloadVisualize
BU of 6wwz by Molmil
Cryo-EM structure of the human chemokine receptor CCR6 in complex with CCL20 and a Go protein
分子名称: C-C chemokine receptor type 6,C-C chemokine receptor type 6, C-C motif chemokine 20, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
著者Wasilko, D.J, Johnson, Z.L, Ammirati, M, Han, S, Wu, H.
登録日2020-05-09
公開日2020-06-24
最終更新日2020-07-01
実験手法ELECTRON MICROSCOPY (3.34 Å)
主引用文献Structural basis for chemokine receptor CCR6 activation by the endogenous protein ligand CCL20.
Nat Commun, 11, 2020
5XTD
DownloadVisualize
BU of 5xtd by Molmil
Cryo-EM structure of human respiratory complex I
分子名称: (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine, Acyl carrier protein, ...
著者Gu, J, Wu, M, Yang, M.
登録日2017-06-19
公開日2017-08-30
最終更新日2019-11-20
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Architecture of Human Mitochondrial Respiratory Megacomplex I2III2IV2.
Cell, 170, 2017
7QPJ
DownloadVisualize
BU of 7qpj by Molmil
Crystal structure of engineered TCR (756) complexed to HLA-A*02:01 presenting MAGE-A10 9-mer peptide
分子名称: Beta-2-microglobulin, GLYCEROL, MHC class I antigen, ...
著者Simister, P.C, Border, E.C, Vieira, J.F, Pumphrey, N.J.
登録日2022-01-04
公開日2022-08-03
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Structural insights into engineering a T-cell receptor targeting MAGE-A10 with higher affinity and specificity for cancer immunotherapy.
J Immunother Cancer, 10, 2022

222624

件を2024-07-17に公開中

PDB statisticsPDBj update infoContact PDBjnumon