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PDB: 201 results

4WYS
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Crystal structure of thiolase from Escherichia coli
Descriptor: Acetyl-CoA acetyltransferase
Authors:Kim, S, Ha, S.C, Ahn, J.W, Kim, E.J, Lim, J.H, Kim, K.J.
Deposit date:2014-11-18
Release date:2015-10-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Redox-switch regulatory mechanism of thiolase from Clostridium acetobutylicum
Nat Commun, 6, 2015
4WYR
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Crystal structure of thiolase mutation (V77Q,N153Y,A286K) from Clostridium acetobutylicum
Descriptor: Acetyl-CoA acetyltransferase, DI(HYDROXYETHYL)ETHER, GLYCEROL
Authors:Kim, S, Ha, S.C, Ahn, J.W, Kim, E.J, Lim, J.H, Kim, K.J.
Deposit date:2014-11-18
Release date:2015-10-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Redox-switch regulatory mechanism of thiolase from Clostridium acetobutylicum
Nat Commun, 6, 2015
4XL4
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Crystal structure of thiolase from Clostridium acetobutylicum in complex with CoA
Descriptor: Acetyl-CoA acetyltransferase, COENZYME A, GLYCEROL
Authors:Kim, S, Ha, S.C, Ahn, J.W, Kim, E.J, Lim, J.H, Kim, K.J.
Deposit date:2015-01-13
Release date:2015-10-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Redox-switch regulatory mechanism of thiolase from Clostridium acetobutylicum
Nat Commun, 6, 2015
4XL2
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Crystal structure of oxidized form of thiolase from Clostridium acetobutylicum
Descriptor: ACETATE ION, Acetyl-CoA acetyltransferase, DI(HYDROXYETHYL)ETHER, ...
Authors:Kim, S, Ha, S.C, Ahn, J.W, Kim, E.J, Lim, J.H, Kim, K.J.
Deposit date:2015-01-13
Release date:2015-10-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Redox-switch regulatory mechanism of thiolase from Clostridium acetobutylicum
Nat Commun, 6, 2015
4XL3
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Crystal structure of reduced form of thiolase from Clostridium acetobutylicum
Descriptor: Acetyl-CoA acetyltransferase, GLYCEROL
Authors:Kim, S, Ha, S.C, Ahn, J.W, Kim, E.J, Lim, J.H, Kim, K.J.
Deposit date:2015-01-13
Release date:2015-10-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Redox-switch regulatory mechanism of thiolase from Clostridium acetobutylicum
Nat Commun, 6, 2015
7Y1H
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BU of 7y1h by Molmil
Controlling fibrosis using compound with novel binding mode to prolyl-tRNA synthetase 1
Descriptor: 1-(5-chloranyl-4-methyl-benzimidazol-1-yl)-3-[(2R,3S)-3-oxidanylpiperidin-2-yl]propan-2-one, ADENOSINE-5'-TRIPHOSPHATE, Bifunctional glutamate/proline--tRNA ligase, ...
Authors:Kim, S, Yoon, I, Son, J, Park, S, Hwang, K.Y.
Deposit date:2022-06-08
Release date:2023-07-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Control of fibrosis with enhanced safety via asymmetric inhibition of prolyl-tRNA synthetase 1.
Embo Mol Med, 15, 2023
7Y1W
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Controlling fibrosis using compound with novel binding mode to prolyl-tRNA synthetase 1
Descriptor: (2R,3S)-2-[3-[4,5-bis(chloranyl)benzimidazol-1-yl]propyl]piperidin-3-ol, ADENOSINE-5'-TRIPHOSPHATE, Bifunctional glutamate/proline--tRNA ligase, ...
Authors:Kim, S, Yoon, I, Son, J, Park, S, Hwang, K.Y.
Deposit date:2022-06-09
Release date:2023-07-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Control of fibrosis with enhanced safety via asymmetric inhibition of prolyl-tRNA synthetase 1.
Embo Mol Med, 15, 2023
7Y28
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Controlling fibrosis using compound with novel binding mode to prolyl-tRNA synthetase 1
Descriptor: 1-[6-(3-fluorophenyl)benzimidazol-1-yl]-3-[(2R,3S)-3-oxidanylpiperidin-2-yl]propan-2-one, ADENOSINE-5'-TRIPHOSPHATE, Bifunctional glutamate/proline--tRNA ligase, ...
Authors:Kim, S, Yoon, I, Son, J, Park, S, Hwang, K.Y.
Deposit date:2022-06-09
Release date:2023-07-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Control of fibrosis with enhanced safety via asymmetric inhibition of prolyl-tRNA synthetase 1.
Embo Mol Med, 15, 2023
7Y3S
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Controlling fibrosis using compound with novel binding mode to prolyl-tRNA synthetase 1
Descriptor: 1-(6-bromanyl-7-methyl-imidazo[4,5-b]pyridin-3-yl)-3-[(2R,3S)-3-oxidanylpiperidin-2-yl]propan-2-one, ADENOSINE-5'-TRIPHOSPHATE, Bifunctional glutamate/proline--tRNA ligase, ...
Authors:Kim, S, Yoon, I, Son, J, Park, S, Hwang, K.Y.
Deposit date:2022-06-12
Release date:2023-07-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Control of fibrosis with enhanced safety via asymmetric inhibition of prolyl-tRNA synthetase 1.
Embo Mol Med, 15, 2023
7DNZ
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Cryo-EM structure of the human ABCB6 (Hemin and GSH-bound)
Descriptor: ATP-binding cassette sub-family B member 6, mitochondrial, CHOLESTEROL HEMISUCCINATE, ...
Authors:Kim, S, Lee, S.S, Park, J.G, Kim, J.W, Kim, S, Kim, N.J, Hong, S, Kang, J.Y, Jin, M.S.
Deposit date:2020-12-11
Release date:2022-06-22
Last modified:2022-08-31
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural Insights into Porphyrin Recognition by the Human ATP-Binding Cassette Transporter ABCB6.
Mol.Cells, 45, 2022
7DNY
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Cryo-EM structure of the human ABCB6 (coproporphyrin III-bound)
Descriptor: ATP-binding cassette sub-family B member 6, mitochondrial, CHOLESTEROL HEMISUCCINATE, ...
Authors:Kim, S, Lee, S.S, Park, J.G, Kim, J.W, Kim, S, Kim, N.J, Hong, S, Kang, J.Y, Jin, M.S.
Deposit date:2020-12-11
Release date:2022-06-22
Last modified:2022-08-31
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural Insights into Porphyrin Recognition by the Human ATP-Binding Cassette Transporter ABCB6.
Mol.Cells, 45, 2022
7VG4
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BU of 7vg4 by Molmil
10,5-methenyltetrahydrofolate cyclohydrolase from Methylobacterium extorquens AM1 strain
Descriptor: Methenyltetrahydrofolate cyclohydrolase
Authors:Kim, S, Lee, S, Kim, I.-K, Seo, H, Kim, K.-J.
Deposit date:2021-09-14
Release date:2022-07-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Structural insight into a molecular mechanism of methenyltetrahydrofolate cyclohydrolase from Methylobacterium extorquens AM1.
Int.J.Biol.Macromol., 202, 2022
7VG5
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10,5-methenyltetrahydrofolate cyclohydrolase from Methylobacterium extorquens AM1 with tetrahydrofolate
Descriptor: (6S)-5,6,7,8-TETRAHYDROFOLATE, Methenyltetrahydrofolate cyclohydrolase
Authors:Kim, S, Lee, S, Kim, I.-K, Seo, H, Kim, K.-J.
Deposit date:2021-09-14
Release date:2022-07-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural insight into a molecular mechanism of methenyltetrahydrofolate cyclohydrolase from Methylobacterium extorquens AM1.
Int.J.Biol.Macromol., 202, 2022
8I6Z
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BU of 8i6z by Molmil
Crystal structure of apo-form of malonyl-CoA reductase C-domain from Chloroflexus aurantiacus
Descriptor: GLYCEROL, L(+)-TARTARIC ACID, Short-chain dehydrogenase/reductase SDR
Authors:Kim, S, Kim, K.-J.
Deposit date:2023-01-30
Release date:2023-06-14
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Cryo-EM structure of bifunctional malonyl-CoA reductase from Chloroflexus aurantiacus reveals a dynamic domain movement for high enzymatic activity.
Int.J.Biol.Macromol., 242, 2023
8I70
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BU of 8i70 by Molmil
Crystal structure of NADP-binding form of malonyl-CoA reductase C-domain from Chloroflexus aurantiacus
Descriptor: GLYCEROL, L(+)-TARTARIC ACID, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Kim, S, Kim, K.-J.
Deposit date:2023-01-30
Release date:2023-06-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Cryo-EM structure of bifunctional malonyl-CoA reductase from Chloroflexus aurantiacus reveals a dynamic domain movement for high enzymatic activity.
Int.J.Biol.Macromol., 242, 2023
4ZTT
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BU of 4ztt by Molmil
Crystal structures of ferritin mutants reveal diferric-peroxo intermediates
Descriptor: Bacterial non-heme ferritin, FE (II) ION, FE (III) ION, ...
Authors:Kim, S, Park, Y.H, Jung, S.W, Seok, J.H, Chung, Y.B, Lee, D.B, Gowda, G, Lee, J.H, Han, H.R, Cho, A.E, Lee, C, Chung, M.S, Kim, K.H.
Deposit date:2015-05-15
Release date:2016-06-15
Last modified:2020-02-19
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Structural Basis of Novel Iron-Uptake Route and Reaction Intermediates in Ferritins from Gram-Negative Bacteria.
J. Mol. Biol., 428, 2016
4XGS
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BU of 4xgs by Molmil
Crystal structure analysis of novel iron uptake mechanism of Gram-negative bacterial ferritin
Descriptor: Ferritin, GLYCEROL, HYDROXY DIIRON-OXO MOIETY, ...
Authors:Kim, S.
Deposit date:2015-01-02
Release date:2016-07-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural Basis of Novel Iron-Uptake Route and Reaction Intermediates in Ferritins from Gram-Negative Bacteria
J. Mol. Biol., 428, 2016
6VYP
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BU of 6vyp by Molmil
Crystal structure of the LSD1/CoREST histone demethylase bound to its nucleosome substrate
Descriptor: DNA (191-MER), FLAVIN-ADENINE DINUCLEOTIDE, Histone H2A type 1, ...
Authors:Kim, S, Zhu, J, Eek, P, Yennawar, N, Song, T.
Deposit date:2020-02-27
Release date:2020-05-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (4.99 Å)
Cite:Crystal Structure of the LSD1/CoREST Histone Demethylase Bound to Its Nucleosome Substrate.
Mol.Cell, 78, 2020
1FI6
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BU of 1fi6 by Molmil
SOLUTION STRUCTURE OF THE REPS1 EH DOMAIN
Descriptor: CALCIUM ION, EH DOMAIN PROTEIN REPS1
Authors:Kim, S, Baleja, J.D.
Deposit date:2000-08-03
Release date:2001-07-18
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of the Reps1 EH domain and characterization of its binding to NPF target sequences.
Biochemistry, 40, 2001
7VG9
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BU of 7vg9 by Molmil
Crystal structure of phosphotransbutyrylase from Clostridium acetobutylicum
Descriptor: Phosphate butyryltransferase, SULFATE ION
Authors:Kim, S, Kim, K.-J.
Deposit date:2021-09-15
Release date:2021-10-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Crystal structure and molecular mechanism of phosphotransbutyrylase from Clostridium acetobutylicum .
J Microbiol Biotechnol., 31, 2021
8IYI
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BU of 8iyi by Molmil
Spermidine synthase from Kluyveromyces lactis
Descriptor: KLLA0B09372p
Authors:Kim, S, Chang, J.H.
Deposit date:2023-04-05
Release date:2023-06-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Analysis of Spermidine Synthase from Kluyveromyces lactis.
Molecules, 28, 2023
7E43
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BU of 7e43 by Molmil
Structural insights into a bifunctional peptide methionine sulfoxide reductase MsrA/B fusion protein from Helicobacter pylori
Descriptor: ACETATE ION, Peptide methionine sulfoxide reductase MsrA/MsrB
Authors:Kim, S, Lee, K, Hwang, K.Y.
Deposit date:2021-02-10
Release date:2021-04-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Insights into a Bifunctional Peptide Methionine Sulfoxide Reductase MsrA/B Fusion Protein from Helicobacter pylori .
Antioxidants (Basel), 10, 2021
7YA3
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BU of 7ya3 by Molmil
Formate dehydrogenase from Novosphingobium sp. AP12 with NADP and Azide
Descriptor: AZIDE ION, Formate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Kim, S, Kim, K.-J.
Deposit date:2022-06-27
Release date:2023-07-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Dual cofactor specific formate dehydrogenase from Novosphingobium sp. AP12 with high activity.
To Be Published
7YA4
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Formate dehydrogenase from Novosphingobium sp. AP12 with NAD and Azide
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, AZIDE ION, ...
Authors:Kim, S, Kim, K.-J.
Deposit date:2022-06-27
Release date:2023-07-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Dual cofactor specific formate dehydrogenase from Novosphingobium sp. AP12 with high activity.
To Be Published
4JDY
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BU of 4jdy by Molmil
Crystal structure of Rv2606c
Descriptor: GLYCEROL, Pyridoxal biosynthesis lyase PdxS
Authors:Kim, S, Kim, K.-J.
Deposit date:2013-02-25
Release date:2013-05-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Mycobacterium tuberculosis Rv2606c: a pyridoxal biosynthesis lyase.
Biochem.Biophys.Res.Commun., 435, 2013

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