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PDB: 45 results

1D6J
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BU of 1d6j by Molmil
CRYSTAL STRUCTURE OF ADENOSINE 5'-PHOSPHOSULFATE (APS) KINASE FROM PENICILLIUM CHRYSOGENUM
Descriptor: ADENOSINE-5'PHOSPHOSULFATE KINASE, L(+)-TARTARIC ACID
Authors:MacRae, I.J, Segel, I.H, Fisher, A.J.
Deposit date:1999-10-13
Release date:2000-02-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of adenosine 5'-phosphosulfate kinase from Penicillium chrysogenum.
Biochemistry, 39, 2000
1I2D
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CRYSTAL STRUCTURE OF ATP SULFURYLASE FROM PENICILLIUM CHRYSOGENUM
Descriptor: ADENOSINE-5'-PHOSPHOSULFATE, ATP SULFURYLASE
Authors:MacRae, I.J, Segel, I.H, Fisher, A.J.
Deposit date:2001-02-07
Release date:2001-07-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Crystal structure of ATP sulfurylase from Penicillium chrysogenum: insights into the allosteric regulation of sulfate assimilation.
Biochemistry, 40, 2001
1M8P
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BU of 1m8p by Molmil
Crystal Structure of P. chrysogenum ATP Sulfurylase in the T-state
Descriptor: 3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE, sulfate adenylyltransferase
Authors:MacRae, I.J, Segel, I.H, Fisher, A.J.
Deposit date:2002-07-25
Release date:2002-11-27
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Allosteric Inhibition via R-State Destabilization in ATP Sulfurylase from Penicillium chrysogenum
Nat.Struct.Biol., 9, 2002
5WEA
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BU of 5wea by Molmil
Human Argonaute2 Helix-7 Mutant
Descriptor: PHENOL, Protein argonaute-2, RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*U)-3')
Authors:Schirle, N.T, Klum, S.M, MacRae, I.J.
Deposit date:2017-07-08
Release date:2017-11-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.12 Å)
Cite:Helix-7 in Argonaute2 shapes the microRNA seed region for rapid target recognition.
EMBO J., 37, 2018
6MDZ
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Human Argonaute2-miR-122 bound to a target RNA with two central mismatches (bu2)
Descriptor: PHENOL, Protein argonaute-2, RNA (5'-R(P*AP*AP*AP*CP*AP*CP*CP*AP*UP*UP*UP*CP*CP*AP*CP*AP*CP*UP*CP*CP*AP*AP*A)-3'), ...
Authors:Sheu-Gruttadauria, J, MacRae, I.J.
Deposit date:2018-09-05
Release date:2019-08-07
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structural Basis for Target-Directed MicroRNA Degradation.
Mol.Cell, 75, 2019
3KS4
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BU of 3ks4 by Molmil
Crystal structure of Reston ebolavirus VP35 RNA binding domain
Descriptor: Polymerase cofactor VP35
Authors:Kimberlin, C.R, Bornholdt, Z.A, Li, S, Woods, V.L, Macrae, I.J, Saphire, E.O.
Deposit date:2009-11-20
Release date:2010-01-12
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Ebolavirus VP35 uses a bimodal strategy to bind dsRNA for innate immune suppression.
Proc.Natl.Acad.Sci.USA, 107, 2009
3KS8
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Crystal structure of Reston ebolavirus VP35 RNA binding domain in complex with 18bp dsRNA
Descriptor: 5'-R(*AP*GP*AP*AP*GP*GP*AP*GP*GP*GP*AP*GP*GP*GP*AP*GP*GP*A)-3', 5'-R(*UP*CP*CP*UP*CP*CP*CP*UP*CP*CP*CP*UP*CP*CP*UP*UP*CP*U)-3', Polymerase cofactor VP35
Authors:Kimberlin, C.R, Bornholdt, Z.A, Li, S, Woods, V.L, Macrae, I.J, Saphire, E.O.
Deposit date:2009-11-20
Release date:2010-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.401 Å)
Cite:Ebolavirus VP35 uses a bimodal strategy to bind dsRNA for innate immune suppression.
Proc.Natl.Acad.Sci.USA, 107, 2009
4W5R
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BU of 4w5r by Molmil
The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-8 (Long Target)
Descriptor: ISOPROPYL ALCOHOL, MAGNESIUM ION, PHENOL, ...
Authors:Schirle, N.T, MacRae, I.J.
Deposit date:2014-08-18
Release date:2014-11-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Gene regulation. Structural basis for microRNA targeting.
Science, 346, 2014
4W5Q
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The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-8
Descriptor: MAGNESIUM ION, PHENOL, Protein argonaute-2, ...
Authors:Schirle, N.T, MacRae, I.J.
Deposit date:2014-08-18
Release date:2014-11-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.101 Å)
Cite:Gene regulation. Structural basis for microRNA targeting.
Science, 346, 2014
2FFL
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BU of 2ffl by Molmil
Crystal Structure of Dicer from Giardia intestinalis
Descriptor: Dicer, MANGANESE (II) ION
Authors:Doudna, J.A, MacRae, I.J, Adams, P.D.
Deposit date:2005-12-19
Release date:2006-01-24
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.33 Å)
Cite:Structural Basis of Double-Stranded RNA Processing by Dicer
Science, 311, 2006
7SWF
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BU of 7swf by Molmil
Cryo-EM structure of Arabidopsis Ago10-guide-target RNA complex in a central duplex conformation
Descriptor: MAGNESIUM ION, Protein argonaute 10, RNA (5'-R(P*CP*CP*AP*UP*UP*GP*UP*CP*AP*CP*AP*CP*UP*CP*CP*AP*A)-3'), ...
Authors:Xiao, Y, MacRae, I.J.
Deposit date:2021-11-19
Release date:2022-08-03
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.79 Å)
Cite:The molecular mechanism of microRNA duplex selectivity of Arabidopsis ARGONAUTE10.
Nucleic Acids Res., 50, 2022
7SWQ
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Cryo-EM structure of Arabidopsis Ago10-guide-target RNA complex in a bent duplex conformation
Descriptor: MAGNESIUM ION, Protein argonaute 10, RNA (5'-R(P*CP*CP*AP*UP*UP*GP*UP*CP*AP*CP*AP*CP*UP*CP*CP*AP*AP*A)-3'), ...
Authors:Xiao, Y, MacRae, I.J.
Deposit date:2021-11-21
Release date:2022-11-23
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.79 Å)
Cite:Structural basis for RNA slicing by a plant Argonaute.
Nat.Struct.Mol.Biol., 30, 2023
7SVA
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BU of 7sva by Molmil
Cryo-EM structure of Arabidopsis Ago10-guide RNA complex
Descriptor: MAGNESIUM ION, Protein argonaute 10, RNA (5'-R(P*UP*GP*GP*AP*GP*UP*GP*UP*GP*AP*CP*AP*AP*UP*GP*GP*UP*GP*UP*UP*U)-3')
Authors:Xiao, Y, MacRae, I.J.
Deposit date:2021-11-18
Release date:2022-11-23
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:Structural basis for RNA slicing by a plant Argonaute.
Nat.Struct.Mol.Biol., 30, 2023
4GHA
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BU of 4gha by Molmil
Crystal structure of Marburg virus VP35 RNA binding domain bound to 12-bp dsRNA
Descriptor: Polymerase cofactor VP35, RNA (5'-R(*CP*UP*AP*GP*AP*CP*GP*UP*CP*UP*AP*G)-3')
Authors:Bale, S, Jean-Philippe, J, Bornholdt, Z.A, Kimberlin, C.K, Halfmann, P, Zandonatti, M.A, Kunert, J, Kroon, G.J.A, Kawaoka, Y, MacRae, I.J, Wilson, I.A, Saphire, E.O.
Deposit date:2012-08-07
Release date:2012-08-22
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Marburg Virus VP35 Can Both Fully Coat the Backbone and Cap the Ends of dsRNA for Interferon Antagonism.
Plos Pathog., 8, 2012
4GH9
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BU of 4gh9 by Molmil
Crystal structure of Marburg virus VP35 RNA binding domain
Descriptor: ACETATE ION, Polymerase cofactor VP35
Authors:Bale, S, Jean-Philippe, J, Bornholdt, Z.A, Kimberlin, C.K, Halfmann, P, Zandonatti, M.A, Kunert, J, Kroon, G.J.A, Kawaoka, Y, MacRae, I.J, Wilson, I.A, Saphire, E.O.
Deposit date:2012-08-07
Release date:2012-08-15
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Marburg Virus VP35 Can Both Fully Coat the Backbone and Cap the Ends of dsRNA for Interferon Antagonism.
Plos Pathog., 8, 2012
2QVW
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BU of 2qvw by Molmil
Structure of Giardia Dicer refined against twinned data
Descriptor: GLP_546_48378_50642, MANGANESE (II) ION
Authors:Doudna, J.A, MacRae, I.J.
Deposit date:2007-08-09
Release date:2007-09-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:An unusual case of pseudo-merohedral twinning in orthorhombic crystals of Dicer
Acta Crystallogr.,Sect.D, 63, 2007
4OLB
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BU of 4olb by Molmil
Crystal Structure of Human Argonaute2 Bound to Tryptophan
Descriptor: 5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*U)-3', Protein argonaute-2, TRYPTOPHAN
Authors:Schirle, N.T, MacRae, I.J.
Deposit date:2014-01-23
Release date:2014-02-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.899 Å)
Cite:The crystal structure of human Argonaute2.
Science, 336, 2012
7KX7
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BU of 7kx7 by Molmil
Cryo-EM structure of Ephydatia fluviatilis PiwiA-piRNA complex
Descriptor: MAGNESIUM ION, Piwi-A, RNA (5'-R(P*UP*CP*UP*CP*AP*GP*(OMC))-3')
Authors:Anzelon, T.A, Chowdhury, S, Lander, G.C, MacRae, I.J.
Deposit date:2020-12-03
Release date:2021-07-14
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural basis for piRNA targeting.
Nature, 597, 2021
7KX9
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Cryo-EM structure of Ephydatia fluviatilis PiwiA-piRNA-target complex
Descriptor: MAGNESIUM ION, Piwi-A, RNA (5'-R(P*UP*CP*UP*CP*UP*UP*GP*AP*GP*UP*UP*GP*GP*AP*CP*AP*AP*AP*UP*GP*GP*CP*AP*(OMG))-3'), ...
Authors:Anzelon, T.A, Chowdhury, S, Lander, G.C, MacRae, I.J.
Deposit date:2020-12-03
Release date:2021-07-14
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural basis for piRNA targeting.
Nature, 597, 2021
7KI3
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BU of 7ki3 by Molmil
Human Argonaute2:miR-122 bound to the HCV genotype 1a site-1 RNA
Descriptor: BARIUM ION, HCV genotype 1a miR-122 site-1, Protein argonaute-2, ...
Authors:Gebert, L.F.R, MacRae, I.J.
Deposit date:2020-10-22
Release date:2021-10-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:A structured RNA motif locks Argonaute2:miR-122 onto the 5' end of the HCV genome.
Nat Commun, 12, 2021
3Q7C
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BU of 3q7c by Molmil
Exonuclease domain of Lassa virus nucleoprotein bound to manganese
Descriptor: MANGANESE (II) ION, Nucleoprotein, PHOSPHATE ION, ...
Authors:Hastie, K.M, Kimberlin, C.R, Zandonatti, M.A, MacRae, I.J, Saphire, E.O.
Deposit date:2011-01-04
Release date:2011-02-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of the Lassa virus nucleoprotein reveals a dsRNA-specific 3' to 5' exonuclease activity essential for immune suppression.
Proc.Natl.Acad.Sci.USA, 108, 2011
4OLA
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BU of 4ola by Molmil
Crystal Structure of Human Argonaute2
Descriptor: 5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*U)-3', ISOPROPYL ALCOHOL, PHENOL, ...
Authors:Schirle, N.T, MacRae, I.J.
Deposit date:2014-01-23
Release date:2014-02-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of human Argonaute2.
Science, 336, 2012
3Q7B
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BU of 3q7b by Molmil
Exonuclease domain of Lassa virus nucleoprotein
Descriptor: Nucleoprotein, PHOSPHATE ION, ZINC ION
Authors:Hastie, K.M, Kimberlin, C.R, Zandonatti, M.A, MacRae, I.J, Saphire, E.O.
Deposit date:2011-01-04
Release date:2011-02-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the Lassa virus nucleoprotein reveals a dsRNA-specific 3' to 5' exonuclease activity essential for immune suppression.
Proc.Natl.Acad.Sci.USA, 108, 2011
5JS2
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Human Argonaute-2 Bound to a Modified siRNA
Descriptor: MAGNESIUM ION, PHENOL, PHOSPHATE ION, ...
Authors:Schirle, N.T, MacRae, I.J.
Deposit date:2016-05-07
Release date:2016-07-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.954 Å)
Cite:Structural Analysis of Human Argonaute-2 Bound to a Modified siRNA Guide.
J.Am.Chem.Soc., 138, 2016
5KI6
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Human Argonaute-2 bound to a guide RNA with a nucleobase modification at position 1
Descriptor: PHENOL, Protein argonaute-2, miR-122
Authors:Schirle, N.T, MacRae, I.J.
Deposit date:2016-06-16
Release date:2016-07-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.153 Å)
Cite:Structure-Guided Control of siRNA Off-Target Effects.
J.Am.Chem.Soc., 138, 2016

 

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